Phylogeny of New World Stipeae (Poaceae): An evaluation of the monophyly of Aciachne and Amelichloa

Cladistics

Volumn 26, Issue 6, 2010, Pages 563-578

  Cialdella, Ana M ^a   Salariato, Diego L ^a   Aagesen, Lone ^a   Giussani, Liliana M ^a   Zuloaga, Fernando O ^a   Morrone, Osvaldo ^a  

^a INSTITUTO DE BOTÁNICA DARWINION   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST; DATA SET; GENETIC MARKER; GRASS; INBREEDING; MOLECULAR ANALYSIS; MORPHOLOGY; OPTIMIZATION; PARSIMONY ANALYSIS; PHYLOGENETICS; PHYLOGENY; PHYTOGEOGRAPHY; TAXONOMY;

UNITED STATES;

POACEAE; STIPEAE;

EID: 78349239721     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2010.00310.x     Document Type: Article

References (92)

1. Aagesen, L., Petersen, G., Seberg, O., 2005. Sequence length variation, indel costs, and congruence in sensitivity analysis. Cladistics 21, 15-30.
2. Arango, C.P., Wheeler, W.C., 2007. Phylogeny of the sea spiders (Arthropoda, Pycogonida) based on direct optimization of six loci and morphology. Cladistics 23, 255-293.
3. Arriaga, M.O., Barkworth, M.E., 2006. Amelichloa, a new genus in the Stipeae (Poaceae). Sida 22, 145-149.
4. Barber, J.C., Hames, K.A., Cialdella, A.M., Giussani, L.M., Morrone, O., 2009. Phylogenetic relationships of Piptochaetium Presl (Poaceae: Stipeae) and related genera as reconstructed from nuclear and chloroplast datasets. Taxon 58, 375-380.
5. Barkworth, M.E., 1990. Nassella (Gramineae, Stipeae): revised interpretation and nomenclatural changes. Taxon 39, 597-614.
6. Barkworth, M.E., 1993. North American Stipeae (Gramineae): taxonomic changes and other comments. Phytologia 74, 1-25.
7. Barkworth, M.E., 2007. Oryzopsis Michx. In: Barkworth, M.E., Capels, K.M., Long, S., Piep, M.B. (Eds), Magnoliophyta: Commelinidae (in part): Poaceae, Part 1. Flora of North America North of Mexico. University Press, New York, pp. 167-168.
8. Barkworth, M.E., Everett, J., 1987. Evolution in the Stipeae: identification and relationships of its monophyletic taxa. In: Soderstrom, T.R., Hilu, K.W., Campbell, C.S., Barkworth, M.E. (Eds), Grass Systematics and Evolution. Smithsonian Institution Press, Washington, DC, pp. 251-264.
9. Barkworth, M.E., Torres, M.A., 2001. Distribution and diagnostic characters of Nassella (Poaceae: Stipeae). Taxon 50, 439-468.
10. Barkworth, M.E., Arriaga, M.O., Smith, J.F., Jacobs, S.W., Valdés-Reyna, J., Shaun Bushman, B., 2008. Molecules and morphology in South American Stipeae (Poaceae). Syst. Bot. 33, 719-731.
11. Bentham, G., 1882. Notes on gramineae. Bot. J. Linn. Soc. 19, 14-134.
12. Bentham, G., Hooker, J.D., 1883. Ordo CC. Gramineae. Gen. Pl. 3(2). Reeve and Co., London.
13. Borchsenius, F., 2009. FastGap 1.1. Department of Biological Sciences, University of Aarhus, Denmark. Published online at
14. Bowden, W., 1960. Chromosome numbers and taxonomic notes on northern grasses. III. Twenty-five genera. Can. J. Bot. 38, 541-557.
15. Bowden, W., Senn, H.A., 1962. Chromosome numbers in 28 grass genera from South America. Can. J. Bot. 40, 1115-1124.
16. Bremer, K., 1994. Branch support and tree stability. Cladistics 10, 295-304.
17. Caro, J.A., Sanchez, E., 1973. Las especies de Stipa (Gramineae) del subgénero Jarava. Kurtziana 7, 61-116.
18. Cialdella, A.M., Giussani, L.M., 2002. Phylogenetic relationships of the genus Piptochaetium (Poaceae, Pooideae, Stipeae): evidence from morphological data. Ann. Mo. Bot. Gard. 89, 305-336.
19. Cialdella, A.M., Giussani, L.M., Aagesen, L., Zuloaga, F.O., Morrone, O., 2007. A phylogeny of Piptochaetium (Poaceae: Pooideae: Stipeae) and related genera based on a combined analysis including trnL-F, rpl16, and morphology. Syst. Bot. 32, 545-559.
20. Clayton, W.D., Renvoize, S.A., 1986. Genera graminum. Grasses of the world. Kew Bulletin, Additional Series 13. Kew Publishing, London.
21. Curto, M., 1998. A new Stipa (Poaceae: Stipeae) from Idaho and Nevada. Madroño 45, 57-63.
22. Doyle, J.J., Doyle, J.L., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
23. Edgar, R.C., 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797.
24. Elias, M.K., 1942. Tertiary Prairie Grasses and other Herbs from the High Plains. Special Paper, Geological Society of America 41. Nebraska Geological Survey. The University of Nebraska, Lincoln.
25. Farris, J.S., Källersjö, M., Kluge, A.G., Bult, C., 1995. Testing significance of incongruence. Cladistics 10, 315-319.
26. Farris, J.S., Albert, V.A., Källersjö, M., Lipscomb, D., Kluge, A.G., 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 10, 315-319.
27. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
28. Freitag, H., 1975. The genus Piptatherum (Gramineae) in Southwest Asia. Notes Roy. Bot. Gard., Edinb. 33, 341-408.
29. Giribet, G., 2001. Exploring the behavior of POY, a program for direct optimization of molecular data. Cladistics 17, 60-70.
30. Giribet, G., 2003. Stability in phylogenetics formulations and its relationship to nodal support. Syst. Biol. 52, 554-564.
31. Goloboff, P.A., Farris, J.S., Källersjo, M., Oxelman, B., Ramírez, M.J., Szumik, C.A., 2003. Improvements to resampling measures of group support. Cladistics 19, 324-332.
32. Goloboff, P.A., Farris, J.S., Nixon, K., 2008. TNT, a free program for phylogenetic analysis. Cladistics 24, 774-786.
33. Hall, T.A., 1999. Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98.
34. Hitchcock, A.S., 1925. The North American species of Stipa. Contr. US Natl. Herb. 24, 215-262.
35. Hitchcock, A.S., 1935. Manual of the Grasses of the United States, 1st edn. USDA Miscellaneous Publication No. 200. Government Printing Office, Washington, DC.
36. Hitchcock, A.S.(revised.by.A.Chase)., 1951. Manual of the Grasses of the United States, 2.1nd edn. USDA Miscellaneous Publication No. 200. Government Printing Office, Washington, DC.
37. Hsiao, C., Jacobs, S.W.L., Chatterton, N.J., Asay, K.H., 1999. A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS). Aust. Syst. Bot. 11, 667-688.
38. Jacobs, S.W.L., Everett, J., 1996. Austrostipa, a new genus, and new names for Australian species formerly included in Stipa (Gramineae). Telopea 6, 579-595.
39. Jacobs, S.W.L., Everett, J., 1997. Jarava plumosa (Gramineae), a new combination for the species formerly known as Stipa papposa. Telopea 7, 301-302.
40. Jacobs, S.W.L., Barkworth, M.E., Hsiao, C., 2000. Relationships within the stipoid grasses (Gramineae). In: Jacobs, S.W.L., Everett, J. (Eds), Grasses: Systematics and Evolution. CSIRO Publishing, Collingwood, Australia, pp. 75-82.
41. Jacobs, S.W.L., Bayer, R., Everett, J., Arriaga, M., Barkworth, M., Sabin-Badereau, A., Torres, A., Vázquez, F., Bagnall, N., 2007. Systematics of the tribe Stipeae (Gramineae) using molecular data. Aliso 23, 349-361.
42. Johnson, B.L., 1945. Cytotaxonomic studies in Oryzopsis. Bot. Gaz. 107, 1-32.
43. Jordan, W.C., Courtney, W.M., Neigel, E.J., 1996. Low levels of intraspecific genetic variation at rapidly evolving chloroplast DNA locus in North American duckwoods (Lemnaceae). Am. J. Bot. 83, 430-439.
44. Kelchner, S.A., Clark, L., 1997. Molecular evolution and phylogenetic utility of the chloroplast rpl16 intron in Chusquea and the Bambusoideae (Poaceae). Mol. Phylogenet. Evol. 8, 385-397.
45. Kunth, C., 1815. Considérations générales sur les Graminées. Mém. Mus. Nat. Hist. Nat. 2, 62-75.
46. Kuntze, O., 1898. Rev. Gen. Pl. 3(2). A. Felix, Leipzig.
47. Lægaard, S., 1987. The genus Aciachne (Poaceae). Nord. J. Bot. 7, 667-672.
48. Löve, Á., Löve, D., 1981. Chromosome number reports LXXI. Taxon 30, 509-511.
49. Matthei, O., Marticorena, C., Rodríguez, R., Kalin Arroyo, M., Muñoz, M., Squeo, F.A., Arancio, G., 1998 [1997]. Nuevas citas y nuevas combinaciones en Poaceae para la Flora de Chile. Gayana Bot. 54, 189-192.
50. Mickevich, M.F., Farris, J.S., 1981. The implications of congruence in Menidia. Syst. Zool. 30, 351-370.
51. Murray, M.G., Thompson, W.F., 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8, 4321-4325.
52. Nicora, E.G., Rúgolo de Agrasar, Z.E., 1987. Los géneros de gramíneas de América austral. Hemisferio Sur SA, Buenos Aires.
53. Parodi, L.R., 1944. Revisión de las gramíneas australes americanas del género Piptochaetium. Rev. Mus. La Plata, Bot. 6, 213-310.
54. Parodi, L.R., 1946. The Andean species of the genus Stipa allied to Stipa obtusa. Blumea 3, 63-70.
55. Parodi, L.R., 1947. Las especies de gramíneas del género Nassella de la Argentina y Chile. Darwiniana 7, 369-395.
56. Parodi, L.R., 1950. Las gramíneas tóxicas para el ganado en la República Argentina. Rev. Argent. Agron. 17, 163-229.
57. Parodi, L.R., 1953. Gramíneas argentinas nuevas o críticas. II. Rev. Argent. Agron. 20, 11-30.
58. Peñailillo, B.P., 1996. Anatherostipa, un nuevo género de Poaceae. Gayana Bot. 53, 277-284.
59. Peñailillo, B.P., 2002. El género Jarava Ruiz & Pav. (Stipeae-Poaceae): delimitación y nuevas combinaciones. Gayana Bot. 59, 27-34.
60. Peñailillo, B.P., 2003. Jarava Ruiz & Pav. Catalogue of New World Grasses (Poaceae): IV. Subfamily Pooideae. Contr. US Natl Herb. 48, 402-409.
61. Peñailillo, B.P., 2005. Los géneros nativos de la tribu Stipeae (Poaceae, Pooideae) en Chile. Theoria 14, 125-140.
62. Petersen, G., Seberg, O., 1997. Phylogenetic analysis of the Triticeae (Poaceae) based on rpoA sequence data. Mol. Phyl. Evol. 7, 217-230.
63. Peterson, P.M., Soreng, R.J., Wu, Z.L., 2005. Ptilagrostis luquensis (Poaceae: Pooideae: Stipeae: Stipinae), a new species from China. Sida 21, 1355-1362.
64. Pons, J., Vogler, A.P., 2006. Size, frequency, and phylogenetic signal of multiple-residue indels in sequence alignment of introns. Cladistics 22, 144-156.
65. Probatova, N.S., Sokolovskaya, A.P., 1980. A karyotaxonomic study of the grasses of the Altai Mts. Bot. Zhurn. 65, 509-520.
66. Reeder, J.R., 1984. Chromosome number reports LXXXII. Taxon 33, 126-134.
67. Renvoize, S.A., 1998. Gramíneas de Bolivia. Royal Botanic Gardens, Kew.
68. Roig, F.A. (Ed.) 1978. Ortachne. In: Nicora, E.G., Gramineae. Flora Patagónica 8, 327-330. Instituto Nacional de Tecnología Agropecuaria, Buenos Aires.
69. Rojas, P.F., 1998 (1997). Nuevas especies y nuevas combinaciones para la tribu Stipeae (Poaceae) en Bolivia. Gayana Bot. 54, 163-182.
70. Romaschenko, K., Peterson, P.M., Soreng, R.J., Garcia-Jacas, N., Futorna, O., Susanna, A., 2008. Molecular phylogenetic analysis of the American Stipeae (Poaceae) resolves Jarava sensu lato polyphyletic: evidence for a new genus, Pappostipa. J. Bot. Res. Inst. Tex. 2, 165-192.
71. Ruiz, H., Pavón, J.A. 1794. Florae peruvianae, et chilensis prodromus, sive novorum generum plantarum peruvianorum, et chilensium descriptiones, et icones. Imprenta de Sancha, Madrid.
72. Saghai-Maroof, M.A., Soliman, K.M., Jorgensen, R.A., Allard, R.W., 1984. Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl Acad. Sci. USA 81, 8014-8018.
73. Simmons, M.P., Ochoterena, H., 2000. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49, 369-381.
74. Smith, W.L., Wheeler, W., 2004. Polyphyly of the mail-cheeked fishes (Teleostei: Scorpaeniformes): evidence from mitochondrial and nuclear sequence data. Cladistics 32, 627-646.
75. Soreng, R.J., Peterson, P.M., Davidse, G., Judziewicz, E.J., Zuloaga, F.O., Filgueiras, T.S., Morrone, O., 2003. Catalogue of New World Grasses (Poaceae): IV. Subfamily Pooideae. Contr. US Natl Herb. 48, 1-730.
76. Spegazzini, C., 1901. Stipeae platenses. Anales Mus. Nac. Montevideo 4, 1-173.
77. Spegazzini, C., 1925. Stipeae platenses novae v. criticae. Revista Argent. Bot. 1, 9-51.
78. Strid, A., Andersson, I.A., 1985. Chromosome numbers of Greek mountain plants. An annotated list of 115 species. Bot. Jahrb. Syst. 107, 203-228.
79. Taberlet, P., Gielly, L., Pautou, G., Bouvet, J., 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17, 1105-1109.
80. Torres, M.A. 1997. Nassella (Gramineae) del noroeste de la Argentina, Stipa (Gramineae) del noroeste de la Argentina, Nicoraella (Gramineae) un nuevo género para América del Sur. Ministerio de la producción y el empleo, provincia de Buenos Aires, Comisión de Investigaciones Científicas (CIC), Monografía 13, pp. 3-76.
81. Trinius, C.B., Ruprecht, F.J. 1842. Species Graminum Stipaceorum auctoribus. I-ii, 1-189. [preprint of "Gramina Agrostidea, III. Callus obconicus, (Stipacea)"]. Mem. Acad. Imp. Sci. St Petersb., Sér. 6, Sci. Math., Seconde Pt Sci. Nat 7, 5, 1-189. 1843.
82. Tzvelev, N.N., 1976. Zlaki CCCP (Grasses of the Soviet Union). Nauka, Leningrad.
83. Varón, A., Vinh, L.S., Bomash, I., Wheeler, W.C. 2008. POY, version 4.0.2870. American Museum of Natural History.
84. Watson, L., Dallwitz, M.J. (1992 onwards). Grass Genera of the World: descriptions, Illustrations, Identification, and Information Retrieval; including Synonyms, Morphology, Anatomy, Physiology, Phytochemistry, Cytology, Classification, Pathogens, World and Local Distribution, and References.
85. Wheeler, W., 1995. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 44, 321-331.
86. Wheeler, W., 1996. Optimization alignment: the end of multiple sequence alignment in phylogenetics. Cladistics 12, 1-9.
87. Wheeler, W., 2001. Homology and optimization of DNA sequence data. Cladistics 17, 3-11.
88. Wheeler, W., 2003. Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search. Cladistics 19, 261-268.
89. Wheeler, W., Hayashi, C.Y., 1998. The phylogeny of the extant chelicerate orders. Cladistics 14, 173-192.
90. Wheeler, D.J.B., Jacobs, S.W.L., Whalley, R.D.B., 2002. Grasses of New South Wales. University of New England, Armidale, NSW.
91. Wu, Z.-L., Phillips, S.M., 2006. Tribe Stipeae. In: Zhengyi, W., Raven, P.H. (Eds), Flora of China 22, Poaceae. Science Press, Beijing, pp. 188-212.
92. Zhang, W., 2000. Phylogeny of the grass family (Poaceae) from rpl16 intron sequence data. Mol. Phylogenet. Evol. 15, 385-397.