Identification of genes contributing to quantitative disease resistance in rice

Science China Life Sciences

Volumn 53, Issue 11, 2010, Pages 1263-1273

  Kou, Yan Jun ^a   Li, Xiang Hua ^a   Xiao, Jing Hua ^a   Wang, Shi Ping ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

defense responsive gene; QTL; quantitative disease resistance; rice

Indexed keywords

ARTICLE; CHROMOSOME MAP; DNA SEQUENCE; GENE EXPRESSION; GENETICS; HOST PATHOGEN INTERACTION; IMMUNOLOGY; INNATE IMMUNITY; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT DISEASE; QUANTITATIVE TRAIT LOCUS; RICE;

BASE SEQUENCE; CHROMOSOME MAPPING; GENE EXPRESSION; HOST-PATHOGEN INTERACTIONS; IMMUNITY, INNATE; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PLANT DISEASES; QUANTITATIVE TRAIT LOCI; SEQUENCE ANALYSIS, DNA;

EID: 78249242122     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-010-4081-6     Document Type: Article

References (53)

1. McDonald B A, Linde C. Pathogen population genetic, evolutionary potential and durable resistance. Annu Rev Phytopathol, 2002, 401: 349-379.
2. Kliebenstein D J, Rowe H C. Anti-rust antitrust. Science, 2009, 323: 1301-1302.
3. Xiong M, Wang S P, Zhang Q F. Coincidence in map positions between pathogen-induced defense-responsive genes and quantitative resistance loci in rice. Sci China Ser C-Life Sci, 2002, 45: 518-526.
4. Wen N, Chu Z, Wang S. Three types of defense-responsive genes are involved in resistance to bacterial blight and fungal blast diseases in rice. Mol Genet Genomics, 2003, 269: 331-339.
5. Lillemo M, Asalf B, Singh R P, et al. The adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar. Theor Appl Genet, 2008, 116: 1155-1166.
6. Kou Y, Wang S. Broad-spectrum and durability: understanding of quantitative disease resistance. Curr Opin Plant Biol, 2010, 13: 181-185.
7. Wang H M, Lin Z X, Zhang X L, et al. Mapping and quantitative trait loci analysis of verticillium wilt resistance genes in cotton. J Integr Plant Biol, 2008, 50: 174-182.
8. Bent A F, Mackey D. Elicitors, effectors, and R genes: the new paradigm and a lifetime supply of questions. Annu Rev Phytopathol, 2007, 45: 399-436.
9. Poland J A, Balint-Kurti P J, Wisser R J, et al. Shades of gray: the world of quantitative disease resistance. Trends Plant Sci, 2008, 14: 21-29.
10. Hu K, Qiu D, Shen X, et al. Isolation and manipulation of quantitative trait loci for disease resistance in rice using a candidate gene approach. Mol Plant, 2008, 1: 786-793.
11. Manosalva P M, Davidson R M, Liu B, et al. A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice. Plant Physiol, 2009, 149: 286-296.
12. Xiang Y, Cao Y, Xu C, et al. Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26. Theor Appl Genet, 2006, 113: 1347-1355.
13. Yang H, Chu Z H, Fu J, et al. The major blast resistance QTL rbr2 is an allele of Pib gene. Mol Plant Breeding, 2008, 6: 213-219.
14. Xing Y, Tan Y F, Hua J P, et al. Characterization of the main effects, epistatic effects and their environmental interactions of QTLs on the genetic basis of yield traits in rice. Theor Appl Genet, 2002, 105: 248-257.
15. Chen H. Population structure of Pyricularia grisea from central and southern China and comparative mapping of QTL for blast- and bacterial blight-resistance in rice and barley. Dissertation for Doctoral Degree. Wuhan: Huazhong Agriculture University, 2001.
16. Chen H, Wang S, Xing Y, et al. Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley. Proc Natl Acad Sci USA, 2003, 100: 2544-2549.
17. Zhou Y, Cao Y L, Huang Y, et al. Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice. Theor Appl Genet, 2009, 120: 127-138.
18. Neff M M, Joseph J D, Chory J, et al. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J, 1998, 14: 387-392.
19. Lincoln S E, Daly M J, Lander E S. Constructing genetics maps with MAPMAKER/EXP Version 3. 0. Whitehead Institute Technical Report. Whitehead Institute, Cambridge, MA, USA. 1993.
20. Wang S, Basten B J, Zeng Z B. Windows QTL Cartographer version 2. 5. Department of Statistics, North Carolina State University, Raleigh, NC, USA. 2007.
21. Sun X, Cao Y, Yang Z, et al. Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encoding a LRR receptor kinase-like protein. Plant J, 2004, 37: 517-527.
22. Kou Y, Qiu D, Wang L, et al. Molecular analyses of the rice tubby-like protein gene family and their response to bacterial infection. Plant Cell Rep, 2009, 28: 113-121.
23. Xie W, Feng Q, Yu H, et al. Parent-independent genotyping for constructing ultra-high density linkage map based on population sequencing. Proc Natl Acad Sci USA, 2010, 107: 10578-10583.
24. Tao Z, Liu H, Qiu D, et al. A pair of allelic WRKY Genes play opposite role in rice-bacteria interactions. Plant Physiol, 2009, 151: 936-948.
25. Chern M, Canlas P E, Fitzgerald H A, et al. Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1. Plant J, 2005, 43: 623-635.
26. Domingo C, Andrés F, Tharreau D, et al. Constitutive expression of OsGH3. 1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice. Mol Plant Microbe Interact, 2009, 22: 201-210.
27. Wang L J, Pei Z Y, Tian Y C, et al. OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation. Mol Plant Microbe Interact, 2005, 18: 375-384.
28. Xiong L Z, Yang Y L. Disease resistance and abiotic stress tolerance in rice are inversely modulated by an abscisic acid-inducible mitogen-activated protein kinase. Plant Cell, 2003, 15: 745-759.
29. Chujo T, Takai R, Akimoto-Tomiyama C, et al. Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice. Biochim Biophys Acta, 2007, 1769: 497-505.
30. Chern M, Fitzgerald H A, Canlas P E, et al. Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol Plant Microbe Interact, 2005, 18: 511-520.
31. Wang Y S, Pi LY, Chen X, et al. Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance. Plant Cell, 2006, 18: 3635-3646.
32. Peng Y, Bartleya L E, Chen X W, et al. OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice. Mol Plant, 2008, 1: 446-458.
33. Fitzgerald H A, Canlas P E, Chern M S, et al. Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae. Plant J, 2005, 43: 335-347.
34. Zeng L R, Qu S, Bordeos A, et al. Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity. Plant Cell, 2004, 16: 2795-2808.
35. Ono E, Wong H L, Kawasaki T, et al. Essential role of the small GTPase Rac in disease resistance of rice. Proc Natl Acad Sci USA, 2001, 98: 759-764.
36. Mei C S, Qi M, Sheng G Y, et al. Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection. Mol Plant Microbe Interact, 2006, 19: 1127-1137.
37. Shen X, Liu H, Yuan B, et al. OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis. Plant Cell Environ, 2010 (in press).
38. Shen X, Yuan B, Liu H, et al. Opposite functions of a rice mitogen-activated protein kinase in the process of resistance against Xanthomonas oryzae. Plant J, 2010 (in press).
39. Chern M, Canlas P E, Ronald P C. Strong Suppression of systemic acquired resistance in Arabidopsis by NRR is dependent on its ability to interact with NPR1 and its putative repression domain. Mol Plant, 2008, 1: 552-559.
40. Durrant W E, Dong X N. Systemic acquired resistance. Annu Rev Phytopathol, 2004, 42: 185-209.
41. Ding X, Cao Y, Huang L, et al. Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice. Plant Cell, 2008, 20: 228-240.
42. Walker L, Estelle M. Molecular mechanisms of auxin action. Curr Opin Plant Biol, 1998, 1: 434-439.
43. Liu B, Zhang S H, Zhu X Y, et al. Candidate defense genes as predictors of quantitative blast resistance in rice. Mol Plant Microbe Interact, 2004, 17: 1146-1152.
44. Pinson S, Capdevielle F, Oard J. Confirming QTLs and finding additional loci conditioning sheath blight resistance in rice using recombinant inbred lines. Crop Sci, 2005, 45: 503-510.
45. Dunwell J M. Cupins: a new superfamily of functionally diverse proteins that include germins and plant storage proteins. Biotechnol Genet Eng Rev, 1998, 15: 1-32.
46. Mur L A, Kenton P, Lloyd A J, et al. The hypersensitive response; the centenary is upon us but how much do we know? J Exp Bot, 2008, 59: 501-520.
47. Zimmermann G, Bäumlein H, Mock H P, et al. The multigene family encoding germin-like proteins of barley. Regulation and function in basal host resistance. Plant Physiol, 2006, 142: 181-192.
48. Dietrich R A, Richberg M H, Schmidt R, et al. A novel zinc finger protein is encoded by the Arabidopsis LSD1 gene and functions as a negative regulator of plant cell death. Cell, 1997, 88: 685-694.
49. Dietrich R A, Delaney T P, Uknes S J, et al. Arabidopsis mutants simulating disease resistance response. Cell, 1994, 77: 565-577.
50. Xie Z, Zhang Z L, Zou X, et al. Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol, 2005, 137: 176-189.
51. Yuan B, Shen X L, Li X H, et al. Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens. Planta, 2007, 226: 953-960.
52. Ballini E, Morel J B, Droc G, et al. A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Mol Plant Microbe Interact, 2008, 21: 859-868.
53. Pagni M, Iseli C, Junier T, et al. trEST, trGEN and Hits: access to databases of predicted protein sequences. Nucl Acids Res, 2001, 29: 148-151.