메뉴 건너뛰기




Volumn 4983 LNBI, Issue , 2008, Pages 208-219

A graph-theoretic method for mining overlapping functional modules in protein interaction networks

Author keywords

Functional module; Graph; Protein interaction network

Indexed keywords

ACTIVE NETWORKS; BIOCOMMUNICATIONS; BIOINFORMATICS; DATABASE SYSTEMS; GRAPH THEORY; INFORMATION SCIENCE; MINING; PLASMA WAVES;

EID: 50049130192     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-79450-9_20     Document Type: Conference Paper
Times cited : (13)

References (28)
  • 1
    • 34547852262 scopus 로고    scopus 로고
    • An ensemble framework for clustering protein-protein interaction networks
    • Asur, S., Ucar, D., Parthasarathy, S.: An ensemble framework for clustering protein-protein interaction networks. ISMB/ECCB 23, 29-40 (2007)
    • (2007) ISMB/ECCB , vol.23 , pp. 29-40
    • Asur, S.1    Ucar, D.2    Parthasarathy, S.3
  • 2
    • 0033518234 scopus 로고    scopus 로고
    • From molecular to modular cell biology
    • Hartwell, L.H., et al.: From molecular to modular cell biology. Nature 402, 47-52 (1999)
    • (1999) Nature , vol.402 , pp. 47-52
    • Hartwell, L.H.1
  • 3
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A.L., Oltvai, Z.N.: Network biology: understanding the cell's functional organization. Nat. Res. 5, 101-114 (2004)
    • (2004) Nat. Res , vol.5 , pp. 101-114
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 4
    • 33748701649 scopus 로고    scopus 로고
    • Detecting functional modules in the yeast protein-protein interaction network
    • Chen, J.C., Yuan, B.: Detecting functional modules in the yeast protein-protein interaction network. Bioinformatics 22, 2283-2290 (2006)
    • (2006) Bioinformatics , vol.22 , pp. 2283-2290
    • Chen, J.C.1    Yuan, B.2
  • 5
    • 0037417817 scopus 로고    scopus 로고
    • Modular organization of cellular networks
    • Rives, A.W., Galitski, T.: Modular organization of cellular networks. Proc. Natl. Acad. Sci. 100, 1128-1133 (2003)
    • (2003) Proc. Natl. Acad. Sci , vol.100 , pp. 1128-1133
    • Rives, A.W.1    Galitski, T.2
  • 6
    • 33846681448 scopus 로고    scopus 로고
    • Modular organization of protein interaction networks
    • Luo, F., et al.: Modular organization of protein interaction networks. Bioinformatics 23, 207-214 (2007)
    • (2007) Bioinformatics , vol.23 , pp. 207-214
    • Luo, F.1
  • 7
    • 10244264813 scopus 로고    scopus 로고
    • Protein complex prediction via cost-based clustering
    • King, A.D., Pržulj, N., Jurisica, I.: Protein complex prediction via cost-based clustering. Bioinformatics 20, 3013-3020 (2004)
    • (2004) Bioinformatics , vol.20 , pp. 3013-3020
    • King, A.D.1    Pržulj, N.2    Jurisica, I.3
  • 9
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • Girvan, M., Newman, M.E.: Community structure in social and biological networks. Proc. Natl. Acad. Sci. 99, 7821-7826 (2002)
    • (2002) Proc. Natl. Acad. Sci , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.2
  • 10
    • 0346156102 scopus 로고    scopus 로고
    • Pereira-Leal, J.B., et al.: Detection of functional modules from protein interaction networks. Proteins: Struct. Func. Bioinformatics 54, 49-57 (2004)
    • Pereira-Leal, J.B., et al.: Detection of functional modules from protein interaction networks. Proteins: Struct. Func. Bioinformatics 54, 49-57 (2004)
  • 11
    • 13844264514 scopus 로고    scopus 로고
    • Iterative cluster analysis of protein interaction data
    • Arnau, V., et al.: Iterative cluster analysis of protein interaction data. Bioinformatics 21, 364-378 (2005)
    • (2005) Bioinformatics , vol.21 , pp. 364-378
    • Arnau, V.1
  • 12
    • 33645830948 scopus 로고    scopus 로고
    • CFinder: Locating cliques and overlapping modules in biological networks
    • Adamcsek, B., Palla, G., Farkas, I., Derenyi, I., Vicsek, T.: CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics 22, 1021-1023 (2006)
    • (2006) Bioinformatics , vol.22 , pp. 1021-1023
    • Adamcsek, B.1    Palla, G.2    Farkas, I.3    Derenyi, I.4    Vicsek, T.5
  • 13
    • 34548511546 scopus 로고    scopus 로고
    • Semantic integration to identify overlapping functional modules in protein interaction networks
    • Cho, Y.R., Hwang, W., Ramanathan, M., Zhang, A.: Semantic integration to identify overlapping functional modules in protein interaction networks. BMC Bioinformatics, 8-265 (2007)
    • (2007) BMC Bioinformatics , vol.8-265
    • Cho, Y.R.1    Hwang, W.2    Ramanathan, M.3    Zhang, A.4
  • 14
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Spirin, V., Mirny, L.A.: Protein complexes and functional modules in molecular networks. Proc. Natl. Acad. Sci., 12123-12128 (2003)
    • (2003) Proc. Natl. Acad. Sci
    • Spirin, V.1    Mirny, L.A.2
  • 15
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader, G.D., Hogue, C.W.: An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4(1) (2003)
    • (2003) BMC Bioinformatics , vol.4 , Issue.1
    • Bader, G.D.1    Hogue, C.W.2
  • 16
    • 33744805096 scopus 로고    scopus 로고
    • Development and implementation of an algorithm for detection of protein complexes in large interaction networks
    • Altaf-Ul-Amin, M., et al.: Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics, 7(207) (2006)
    • (2006) BMC Bioinformatics , vol.7 , Issue.207
    • Altaf-Ul-Amin, M.1
  • 17
    • 33947109414 scopus 로고    scopus 로고
    • A seed-refine algorithm for detecting protein complexes from protein interaction data
    • Pei, P., Zhang, A.: A seed-refine algorithm for detecting protein complexes from protein interaction data. IEEE Transactions on Nanobioscience 6, 43-50 (2007)
    • (2007) IEEE Transactions on Nanobioscience , vol.6 , pp. 43-50
    • Pei, P.1    Zhang, A.2
  • 18
    • 20444504323 scopus 로고    scopus 로고
    • Uncovering the overlapping community structure of complex networks in nature and society
    • Palla, G., et al.: Uncovering the overlapping community structure of complex networks in nature and society. Nature 435, 814-818 (2005)
    • (2005) Nature , vol.435 , pp. 814-818
    • Palla, G.1
  • 20
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H., Mason, S., Barabási, A., Oltvai, Z.: Lethality and centrality in protein networks. Nature 411, 41-42 (2001)
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.2    Barabási, A.3    Oltvai, Z.4
  • 21
    • 1842580761 scopus 로고    scopus 로고
    • Functional and topological characterization of protein interaction networks
    • Yook, S., Oltvai, Z., Barabasi, A.: Functional and topological characterization of protein interaction networks. Proteomics 4, 928-942 (2004)
    • (2004) Proteomics , vol.4 , pp. 928-942
    • Yook, S.1    Oltvai, Z.2    Barabasi, A.3
  • 22
    • 1342330546 scopus 로고    scopus 로고
    • Functional topology in a network of protein interactions
    • Pržulj, N., Wigle, D.A., Jurisica,I.: Functional topology in a network of protein interactions. Bioinformatics 20(3), 340-348 (2004)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 340-348
    • Pržulj, N.1    Wigle, D.A.2    Jurisica, I.3
  • 23
    • 33750325308 scopus 로고    scopus 로고
    • Ucar, D., Asur, S., Catalyurek, U., Parthasarathy, S.: Improving functional modularity in potein-protein interactions graphs using Hub-induced subgraphs. In: Fürnkranz, J., Scheffer, T., Spiliopoulou, M. (eds.) PKDD 2006. LNCS (LNAI), 4213, Springer, Heidelberg (2006)
    • Ucar, D., Asur, S., Catalyurek, U., Parthasarathy, S.: Improving functional modularity in potein-protein interactions graphs using Hub-induced subgraphs. In: Fürnkranz, J., Scheffer, T., Spiliopoulou, M. (eds.) PKDD 2006. LNCS (LNAI), vol. 4213, Springer, Heidelberg (2006)
  • 24
    • 33644875537 scopus 로고    scopus 로고
    • MIPS: Analysis and annotation of proteins from whole genome in 2005
    • Mewes, H.W., et al.: MIPS: analysis and annotation of proteins from whole genome in 2005. Nucleic Acid Research 34, 169-172 (2006)
    • (2006) Nucleic Acid Research , vol.34 , pp. 169-172
    • Mewes, H.W.1
  • 25
    • 9144257282 scopus 로고    scopus 로고
    • The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
    • Ruepp, A., et al.: The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acid Research 32, 5539-5545 (2004)
    • (2004) Nucleic Acid Research , vol.32 , pp. 5539-5545
    • Ruepp, A.1
  • 26
    • 50049106202 scopus 로고    scopus 로고
    • http://dip.doe-mbi.ucla.edu/
  • 27
    • 34248397539 scopus 로고    scopus 로고
    • A novel functional module detection algorithm for protein- protein interaction networks
    • Hwang, W., Cho, Y.R., Zhang, A., Ramanathan, M.: A novel functional module detection algorithm for protein- protein interaction networks. Algorithms for Molecular Biology 12, 1-24 (2006)
    • (2006) Algorithms for Molecular Biology , vol.12 , pp. 1-24
    • Hwang, W.1    Cho, Y.R.2    Zhang, A.3    Ramanathan, M.4
  • 28
    • 50049095931 scopus 로고    scopus 로고
    • Cho, Y.R., Hwang, W., Zhang, A.: Identification of overlapping functional modules in protein interaction networks: information flow-based approach. In: Perner, P. (ed.) ICDM 2006. LNCS (LNAI), 4065, Springer, Heidelberg (2006)
    • Cho, Y.R., Hwang, W., Zhang, A.: Identification of overlapping functional modules in protein interaction networks: information flow-based approach. In: Perner, P. (ed.) ICDM 2006. LNCS (LNAI), vol. 4065, Springer, Heidelberg (2006)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.