Perylenediimide-linked DNA dumbbells: Long-distance electronic interactions and hydrophobic assistance of base-pair melting

Journal of Physical Chemistry C

Volumn 114, Issue 48, 2010, Pages 20466-20471

  Hariharan, Mahesh ^a,b   Siegmund, Karsten ^a   Zheng, Yan ^a,c   Long, Hai ^a,d   Schatz, George C ^a   Lewis, Frederick D ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

^b INDIAN INSTITUTE OF SCIENCE EDUCATION AND RESEARCH   (India)

^c POLYERA CORPORATION   (United States)

^d NATIONAL RENEWABLE ENERGY LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADDED SALT; AQUEOUS BUFFER; BASE PAIRS; BASE-PAIR DOMAIN; CHEMICAL LIGATION; CIRCULAR DICHROISM SPECTRA; ELECTRONIC INTERACTIONS; ELECTRONIC SPECTROSCOPY; GOOD YIELD; INTERMEDIATE SPECIE; LONG WAVELENGTH; LOW MELTING TEMPERATURES; MOLECULAR DYNAMICS SIMULATIONS; MOLECULAR RULER; PARTIAL COMPENSATION; PERYLENEDIIMIDES; ROOM TEMPERATURE; SPECTRAL DATA; SYNTHETIC DNA; TEMPERATURE DEPENDENT; THREE-STATE MODELS; UV-VISIBLE SPECTRA;

CHROMOPHORES; DICHROISM; EXCITONS; MOLECULAR DYNAMICS;

MELTING;

EID: 78149235337     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp1048309     Document Type: Article

References (36)

1. Doktycz, M. J.; Paner, T. M.; Benight, A. S. Biopolymers 1993. 33, 1765-1777.
2. McCullagh, M.; Zhang, L.; Karaba, A. H.; Zhu, H.; Schatz, G. C.; Lewis, F. D. J. Phys. Chem. B 2008, 112, 11415-11421.
3. Herrlein, M. K.; Nelson, J. S.; Letsinger, R. L. J. Am. Chem. Soc. 1995, 117, 10151-10152.
4. Herrlein, M. K.; Letsinger, R. L. Angew. Chem., Int. Ed. 1997, 36, 599-601.
5. Zhang, L.; Long, H.; Schatz, G. C.; Lewis, F. D. Org. Biomol. Chem. 2007, 5, 450-456.
6. Lewis, F. D.; Liu, X. Y.; Wu, Y. S.; Zuo, X. B. J. Am. Chem. Soc. 2003, 125, 12729-12731.
7. Lewis, F. D.; Zhang, L.; Liu, X.; Zuo, X.; Tiede, D. M.; Long, H.; Schatz, G. C. J. Am. Chem. Soc. 2005, 127, 14445-14453.
8. Lewis, F. D.; Zhang, L. G.; Zuo, X. B. J. Am. Chem. Soc. 2005, 127, 10002-10003.
9. Lewis, F. D. Photochem. Photobiol. 2005, 81, 65-72.
10. (a) Förster, T. Ann. Phys. 1948, 2, 55-75.
11. (b) Lakowicz, J. R. Principles of Fluorescence Spectroscopy, 2nd ed.; Kluwer Academic: New York, 1999.
12. (a) Wang, W.; Wan, W.; Zhou, H. H.; Niu, S. Q.; Li, A. D. Q. J. Am. Chem. Soc. 2003, 125, 5248-5249.
13. (b) Che, Y.; Yang, X. M.; Zang, L. Chem. Commun. 2008, 1413-1415.
14. (a) Abdalla, M. A.; Bayer, J.; Radler, J. O.; Müllen, K. Angew. Chem., Int. Ed. 2004, 43, 3967-3970.
15. (b) Bayer, J.; Radler, J. O.; Blossey, R. Nano Lett. 2005, 5, 497-501.
16. Zheng, Y.; Long, H.; Schatz, G. C.; Lewis, F. D. Chem. Commun. 2005, 4795-4797.
17. Ustinov, A. V.; Dubnyakova, V. V.; Korshun, V. A. Tetrahedron 2008, 64, 1467-1473.
18. (a) Bevers, S.; O'Dea, T. P.; McLaughlin, L. W. J. Am. Chem. Soc. 1998, 120, 11004-11005.
19. (b) Bevers, S.; Schutte, S.; McLaughlin, L. W. J. Am. Chem. Soc. 2000, 122, 5905-5915.
20. (c) Zheng, Y.; Long, H.; Schatz, G. C.; Lewis, F. D. Chem. Commun. 2006, 3830-3832.
21. Hariharan, M.; Zheng, Y.; Long, H.; Zeidan, T. A.; Schatz, G. C.; Vura-Weis, J.; Wasielewski, M. R.; Zuo, X. B.; Tiede, D. M.; Lewis, F. D. J. Am. Chem. Soc. 2009, 131, 5920-5929.
22. Rahe, M.; Rinn, C.; Carell, T. Chem. Commun. 2003, 2120-2121.
23. Letsinger, R. L.; Wu, T. J. Am. Chem. Soc. 1995, 117, 7323-7328.
24. Carriero, S.; Damha, M. J. Org. Lett. 2003, 5, 273-276.
25. McDowell, J. A. MeltWin 3.5; 2001.
26. Johnson, W. C. In Circular Dichroism, Principles and Applications; Berova, N., Nakanishi, K., Woody, R. W., Eds.; Wiley-VCH: New York, 2000; p 703-718.
27. Berova, N.; Nakanishi, K. In Circular Dichroism; Berova, N., Nakanishi, K., Woody, R. W., Eds.; Wiley-VCH: New York, 2000.
28. Bloomfield, V. A.; Crothers, D. M.; Tinoco, I., Jr. Nucleic Acids, Structures Properties Functions; University Science Books: Sausalito, CA, 2000.
29. Giaimo, J. A.; Lockard, J. V.; Sinks, L. E.; Scott, A. M.; Wilson, T. M.; Wasielewski, M. R. J. Phys. Chem. A 2008, 112, 2322-2330.
30. Ardhammar, M.; Kurucsev, T.; Nordén,B.In Circular Dichroism, Principles and Applications; Berova, N., Nakanishi, K., Woody, R. W., Eds.; Wiley-VCH: New York, 2000; p 741-768.
31. The presence of an equilibrium between monomer and aggregate is not expected to alter the observed or corrrected CD spectra of D6,asthe hairpin dimer of H8 has a very weak CD spectrum.
32. Sadrai, M.; Hadel, L.; Sauers, R. R.; Husain, S.; Krogh-Jespersen, K.; Westbrook, J. D.; Bird, G. R. J. Phys. Chem. 1992, 96, 7988-7996.
33. (a) Matile, S.; Berova, N.; Nakanishi, K.; Fleischhauer, J.; Woody, R. W. J. Am. Chem. Soc. 1996, 118, 5198-5206.
34. (b) Tsubaki, K.; Takaishi, K.; Tanaka, H.; Miura, M.; Kawabata, T. Org. Lett. 2006, 8, 2587-2590.
35. (a) Searle, M. S.; Williams, D. H. Nucleic Acids Res. 1993, 21, 2051-2056.
36. (b) Petruska, J.; Goodman, M. F. J. Biol. Chem. 1995, 270, 746-750.