Removal of subsurface fluorescence in cryo-imaging using deconvolution

Optics Express

Volumn 18, Issue 21, 2010, Pages 22324-22338

  Krishnamurthi, Ganapathy ^a   Wang, Charlie Y ^a,b   Steyer, Grant ^a   Wilson, David L ^a,b  

^a School of Biomedical Engineering   (United States)

^b CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMAGE RECONSTRUCTION; RESTORATION; VISUALIZATION;

CONTRAST-TO-NOISE; FLUORESCENT STRUCTURE; IMAGE RESTORATION; IMAGE VOLUME; IMPROVED VISUALIZATION; LABELED CELLS; RICHARDSON-LUCY; ROC ANALYSIS; SHAPE AND SIZE; SINGLE CELLS;

FLUORESCENCE;

GREEN FLUORESCENT PROTEIN; MICROSPHERE;

ALGORITHM; ANIMAL; ARTICLE; BIOTECHNOLOGY; CRYOPRESERVATION; DIAGNOSTIC IMAGING; FLUORESCENCE MICROSCOPY; FREEZING; HUMAN; IMAGE PROCESSING; IMAGE QUALITY; METABOLISM; METHODOLOGY; MOUSE; OPTICS; STATISTICAL MODEL;

ALGORITHMS; ANIMALS; BIOTECHNOLOGY; CRYOPRESERVATION; DIAGNOSTIC IMAGING; FREEZING; GREEN FLUORESCENT PROTEINS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICE; MICROSCOPY, FLUORESCENCE; MICROSPHERES; MODELS, STATISTICAL; OPTICS AND PHOTONICS; PHANTOMS, IMAGING;

EID: 78049521798     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.18.022324     Document Type: Article

References (21)

1. G. J. Steyer, D. Roy, O. Salvado, M. E. Stone, and D. L. Wilson, "Cryo-Imaging of Fluorescently-Labeled Single Cells in a Mouse", Proc. Soc. Photo Opt. Instrum. Eng. 7262, 72620W, W8 (2009).
2. D. Roy, G. J. Steyer, M. Gargesha, M. E. Stone, and D. L. Wilson, "3D cryo-imaging: a very high-resolution view of the whole mouse", Anat. Rec. (Hoboken) 292(3), 342-351 (2009).
3. M. Gargesha, M. Qutaish, D. Roy, G. Steyer, H. Bartsch, and D. L. Wilson, "Enhanced Volume Rendering Techniques for High-Resolution Color Cryo-Imaging Data", Proc. Soc. Photo Opt. Instrum. Eng. 7262, 72655V (2009).
4. G. J. Steyer, D. Roy, O. Salvado, M. E. Stone, and D. L. Wilson, "Removal of out-of-plane fluorescence for single cell visualization and quantification in cryo-imaging", Ann. Biomed. Eng. 37(8), 1613-1628 (2009).
5. D. Roy, M. Gargesha, G. J. Steyer, P. Hakimi, R. W. Hanson, and D. L. Wilson, "Multi-scale Characterization of the PEPCK-Cmus Mouse Through 3D Cryo-Imaging", Int. J. Biomed. Imaging 2010, 1-12 (2010).
6. J. A. Spaan, R. ter Wee, J. W. van Teeffelen, G. Streekstra, M. Siebes, C. Kolyva, H. Vink, D. S. Fokkema, and E. Van Bavel, "Visualisation of intramural coronary vasculature by an imaging cryomicrotome suggests compartmentalisation of myocardial perfusion areas", Med. Biol. Eng. Comput. 43(4), 431-435 (2005).
7. P. S. Tsai, B. Friedman, A. I. Ifarraguerri, B. D. Thompson, V. Lev-Ram, C. B. Schaffer, Q. Xiong, R. Y. Tsien, J. A. Squier, and D. Kleinfeld, "All-optical histology using ultrashort laser pulses", Neuron 39(1), 27-41 (2003).
8. T. Ragan, J. D. Sylvan, K. H. Kim, H. Huang, K. Bahlmann, R. T. Lee, and P. T. So, "High-resolution whole organ imaging using two-photon tissue cytometry", J. Biomed. Opt. 12(1), 014015 (2007).
9. J. Mitic, T. Anhut, M. Meier, M. Ducros, A. Serov, and T. Lasser, "Optical sectioning in wide-field microscopy obtained by dynamic structured light illumination and detection based on a smart pixel detector array", Opt. Lett. 28(9), 698-700 (2003).
10. M. A. Neil, R. Juskaitis, and T. Wilson, "Method of obtaining optical sectioning by using structured light in a conventional microscope", Opt. Lett. 22(24), 1905-1907 (1997).
11. G. D. Li, D. Savvas, E. Arthur, and E. J. Lucy, "A new wide field-of-view confocal imaging system and its applications in drug discovery and pathology", Proc. Soc. Photo Opt. Instrum. Eng. 6009, 1-16 (2005).
12. P. van Horssen, M. Siebes, I. Hoefer, J. A. Spaan, and J. P. van den Wijngaard, "Improved detection of fluorescently labeled microspheres and vessel architecture with an imaging cryomicrotome", Med. Biol. Eng. Comput. 48(8), 735-744 (2010).
13. P. Sarder, and A. Nehorai, "Deconvolution methods for 3-D fluorescence microscopy images", IEEE Signal Process. Mag. 23(3), 32-45 (2006).
14. W. Wallace, L. H. Schaefer, and J. R. Swedlow, "A workingperson's guide to deconvolution in light microscopy", Biotechniques 31(5), 1076-1078, 1080, 1082 passim (2001).
15. L. B. Lucy, "An iterative technique for the rectification of observed distributions", Astron. J. 79, 745-754 (1974).
16. W. H. Richardson, "Bayesian-Based Iterative Method of Image Restoration", J. Opt. Soc. Am. 62(1), 55-59 (1972).
17. N. Wiener, ed., Extrapolation, Interpolation, and Smoothing of Stationary Time Series (Wiley, New York, 1949).
18. L. A. Shepp, and Y. Vardi, "Maximum likelihood reconstruction for emission tomography", IEEE Trans. Med. Imaging 1(2), 113-122 (1982).
19. R. L. White, "Image restoration using the damped Richardson-Lucy method", Proc. Soc. Photo Opt. Instrum. Eng. 2198, 1342-1348 (1994).
20. J. C. Szucsik, A. G. Lewis, D. J. Marmer, and J. L. Lessard, "Urogenital tract expression of enhanced green fluorescent protein in transgenic mice driven by a smooth muscle gamma-actin promoter", J. Urol. 171(2), 944-949 (2004).
21. S. H. Park, J. M. Goo, and C. H. Jo, "Receiver operating characteristic (ROC) curve: practical review for radiologists", Korean J. Radiol. 5(1), 11-18 (2004).