A semantic query interface for the OGO platform

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 6266 LNCS, Issue , 2010, Pages 128-142

  Miñarro Giménez, José Antonio ^a   Aranguren, Mikel Egaña ^a   García Sánchez, Francisco ^a   Fernández Breis, Jesualdo Tomás ^a  

^a UNIVERSITY OF MURCIA   (Spain)

Author keywords

Biomedical Informatics; Ontology; Semantic Querying; Semantic Web

Indexed keywords

BIOMEDICAL INFORMATICS; BIOMEDICAL SYSTEMS; DOMAIN KNOWLEDGE; HUMAN GENETIC DISEASE; ORTHOLOGS; QUERY BUILDING; QUERY INTERFACES; QUERY MODULES; RESEARCH GROUPS; SEMANTIC LANGUAGE; SEMANTIC QUERY;

BIOINFORMATICS; DESIGN; INFORMATION TECHNOLOGY; ONTOLOGY; QUERY LANGUAGES;

SEMANTIC WEB;

EID: 78049472640     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-15020-3_13     Document Type: Conference Paper

References (14)

1. Berners-Lee, T., Hendler, J., Lassila, O.: The Semantic Web. Scientific American 284(5), 34-43 (2001)
2. Bernstein, A., Kaufmann, E.: GINO - A Guided Input Natural Language Ontology Editor. In: Cruz, I., Decker, S., Allemang, D., Preist, C., Schwabe, D., Mika, P., Uschold, M., Aroyo, L.M. (eds.) ISWC 2006. LNCS, vol. 4273, pp. 144-157. Springer, Heidelberg (2006) (Pubitemid 44892027)
3. Bodenreider, O., Sahoo, S.S.: Semantic Web for Translational Biomedicine: Two Pilot Experiments. In: Proceedings of the AMIA Summit on Translational Bioinformatics, vol. 148 (2008)
4. Camon, E., Magrane, M., Barrell, D., Lee, V., Dimmer, E., Maslen, J., Binns, D., Harte, N., Lopez, R., Apweiler, R.: The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res. 32, D262-D266 (2004)
5. Jiménez-Ruiz, E., Berlanga, R., Nebot, V., Sanz, I.: OntoPath: A Language for Retrieving Ontology Fragments. In: Meersman, R., Tari, Z. (eds.) OTM 2007, Part I. LNCS, vol. 4803, pp. 897-914. Springer, Heidelberg (2007)
6. Miñarro Giménez, J., Madrid, M., Fernández-Breis, J.: OGO: an ontological approach for integrating knowledge about orthology. BMC Bioinformatics 10, S10-S13 (2009)
7. GO, C.: Gene Ontology: tool for the unification of biology. Nature Genetics 23, 25-29 (2000)
8. Namgoong, H., Kim, H.G.: Ontology-based Controlled Natural Language Editor Using CFG with Lexical Dependency. In: Aberer, K., Choi, K.-S., Noy, N., Allemang, D., Lee, K.-I., Nixon, L.J.B., Golbeck, J., Mika, P., Maynard, D., Mizoguchi, R., Schreiber, G., Cudré-Mauroux, P. (eds.) ASWC 2007 and ISWC 2007. LNCS, vol. 4825, pp. 351-364. Springer, Heidelberg (2007)
9. Sayers, E., Barrett, T., Benson, D., Bolton, E., Bryant, S., Canese, K., Chetvernin, V., Church, D., Dicuccio, M., Federhen, S., Feolo, M., Helmberg, W., Geer, L., Kapustin, Y., Landsman, D., Lipman, D., Lu, Z., Madden, T., Madej, T., Maglott, D., Marchler-Bauer, A., Miller, V., Mizrachi, I., Ostell, J., Panchenko, A., Pruitt, K., Schuler, G., Sequeira, E., Sherry, S., Shumway, M., Sirotkin, K., Slotta, D., Souvorov, A., Starchenko, G., Tatusova, T., Wagner, L., Wang, Y., Wilbur, J., Yaschenko, E., Ye, J.: Database resources of the National Center for Biotechnology Information. Nucleic acids research (2009)
10. Schwitter, R.: A controlled natural language layer for the semantic web. In: Zhang, S., Jarvis, R.A. (eds.) AI 2005. LNCS (LNAI), vol. 3809, pp. 425-434. Springer, Heidelberg (2005)
11. Smart, P.: Controlled natural languages and the semantic web. Tech. rep., School of Electronics and Computer Science, University of Southampton, Technical Report ITA/P12/SemWebCNL (2008)
12. Smith, B., Ceusters, W., Klagges, B., Kohler, J., Kumar, A., Lomax, J., Mungall, C., Neuhaus, F., Rector, A., Rosse, C.: Relations in Biomedical Ontologies. Genome Biology 6, R:46 (2005)
13. Valencia-García, R., García-Sánchez, F., Castellanos-Nieves, D., Fernández-Breis, J.: OWLPath: An OWL Ontology-Guided Query Editor. IEEE Transactions on Systems, Man, and Cybernetics - Part A: Systems and Humans (2010), doi:10.1109/TSMCA.2010.2048029
14. Wang, C., Xiong, M., Zhou, Q., Yu, Y.: PANTO: A Portable Natural Language Interface to Ontologies. In: Franconi, E., Kifer, M., May, W. (eds.) ESWC 2007. LNCS, vol. 4519, pp. 473-487. Springer, Heidelberg (2007) (Pubitemid 47290027)