-
1
-
-
63049104211
-
Microenvironmental regulation of metastasis
-
10.1038/nrc2618, 19279573
-
Joyce JA, Pollard JW. Microenvironmental regulation of metastasis. Nat Rev Cancer 2009, 9(4):239-252. 10.1038/nrc2618, 19279573.
-
(2009)
Nat Rev Cancer
, vol.9
, Issue.4
, pp. 239-252
-
-
Joyce, J.A.1
Pollard, J.W.2
-
2
-
-
43249121177
-
Stromal gene expression predicts clinical outcome in breast cancer
-
10.1038/nm1764, 18438415
-
Finak G, Bertos N, Pepin F, Sadekova S, Souleimanova M, Zhao H, Chen H, Omeroglu G, Meterissian S, Omeroglu A, et al. Stromal gene expression predicts clinical outcome in breast cancer. Nat Med 2008, 14(5):518-527. 10.1038/nm1764, 18438415.
-
(2008)
Nat Med
, vol.14
, Issue.5
, pp. 518-527
-
-
Finak, G.1
Bertos, N.2
Pepin, F.3
Sadekova, S.4
Souleimanova, M.5
Zhao, H.6
Chen, H.7
Omeroglu, G.8
Meterissian, S.9
Omeroglu, A.10
-
3
-
-
33751312857
-
Gene expression signatures of morphologically normal breast tissue identify basal-like tumors
-
10.1186/bcr1608, 1779486, 17054791
-
Finak G, Sadekova S, Pepin F, Hallett M, Meterissian S, Halwani F, Khetani K, Souleimanova M, Zabolotny B, Omeroglu A, et al. Gene expression signatures of morphologically normal breast tissue identify basal-like tumors. Breast Cancer Res 2006, 8(5):R58. 10.1186/bcr1608, 1779486, 17054791.
-
(2006)
Breast Cancer Res
, vol.8
, Issue.5
-
-
Finak, G.1
Sadekova, S.2
Pepin, F.3
Hallett, M.4
Meterissian, S.5
Halwani, F.6
Khetani, K.7
Souleimanova, M.8
Zabolotny, B.9
Omeroglu, A.10
-
4
-
-
9144264883
-
In silico dissection of cell-type-associated patterns of gene expression in prostate cancer
-
10.1073/pnas.2536479100, 327196, 14722351
-
Stuart RO, Wachsman W, Berry CC, Wang-Rodriguez J, Wasserman L, Klacansky I, Masys D, Arden K, Goodison S, McClelland M, et al. In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proc Natl Acad Sci U S A 2004, 101(2):615-620. 10.1073/pnas.2536479100, 327196, 14722351.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.2
, pp. 615-620
-
-
Stuart, R.O.1
Wachsman, W.2
Berry, C.C.3
Wang-Rodriguez, J.4
Wasserman, L.5
Klacansky, I.6
Masys, D.7
Arden, K.8
Goodison, S.9
McClelland, M.10
-
5
-
-
33645739790
-
Tumor stroma and regulation of cancer development
-
10.1146/annurev.pathol.1.110304.100224, 18039110
-
Tlsty TD, Coussens LM. Tumor stroma and regulation of cancer development. Annu Rev Pathol 2006, 1:119-150. 10.1146/annurev.pathol.1.110304.100224, 18039110.
-
(2006)
Annu Rev Pathol
, vol.1
, pp. 119-150
-
-
Tlsty, T.D.1
Coussens, L.M.2
-
6
-
-
46449112679
-
Autocrine induction of invasion and metastasis by tumor-associated trypsin inhibitor in human colon cancer cells
-
10.1038/onc.2008.42, 18317448
-
Gouyer V, Fontaine D, Dumont P, de Wever O, Fontayne-Devaud H, Leteurtre E, Truant S, Delacour D, Drobecq H, Kerckaert JP, et al. Autocrine induction of invasion and metastasis by tumor-associated trypsin inhibitor in human colon cancer cells. Oncogene 2008, 27(29):4024-4033. 10.1038/onc.2008.42, 18317448.
-
(2008)
Oncogene
, vol.27
, Issue.29
, pp. 4024-4033
-
-
Gouyer, V.1
Fontaine, D.2
Dumont, P.3
de Wever, O.4
Fontayne-Devaud, H.5
Leteurtre, E.6
Truant, S.7
Delacour, D.8
Drobecq, H.9
Kerckaert, J.P.10
-
7
-
-
65649153358
-
Epithelial-mesenchymal transition: a cancer researcher's conceptual friend and foe
-
10.2353/ajpath.2009.080545, 2671246, 19342369
-
Klymkowsky MW, Savagner P. Epithelial-mesenchymal transition: a cancer researcher's conceptual friend and foe. Am J Pathol 2009, 174(5):1588-1593. 10.2353/ajpath.2009.080545, 2671246, 19342369.
-
(2009)
Am J Pathol
, vol.174
, Issue.5
, pp. 1588-1593
-
-
Klymkowsky, M.W.1
Savagner, P.2
-
8
-
-
58349089151
-
Microenvironment driven invasion: a multiscale multimodel investigation
-
10.1007/s00285-008-0210-2, 18839176
-
Anderson AR, Rejniak KA, Gerlee P, Quaranta V. Microenvironment driven invasion: a multiscale multimodel investigation. J Math Biol 2009, 58(4-5):579-624. 10.1007/s00285-008-0210-2, 18839176.
-
(2009)
J Math Biol
, vol.58
, Issue.4-5
, pp. 579-624
-
-
Anderson, A.R.1
Rejniak, K.A.2
Gerlee, P.3
Quaranta, V.4
-
9
-
-
34548655343
-
Quantitative sequence-function relationships in proteins based on gene ontology
-
10.1186/1471-2105-8-294, 1976327, 17686158
-
Sangar V, Blankenberg DJ, Altman N, Lesk AM. Quantitative sequence-function relationships in proteins based on gene ontology. BMC Bioinformatics 2007, 8:294. 10.1186/1471-2105-8-294, 1976327, 17686158.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 294
-
-
Sangar, V.1
Blankenberg, D.J.2
Altman, N.3
Lesk, A.M.4
-
10
-
-
67349283061
-
A systems biology perspective on cholangiocellular carcinoma development: focus on MAPK-signaling and the extracellular environment
-
10.1016/j.jhep.2009.01.024, 19395114
-
Wang C, Maass T, Krupp M, Thieringer F, Strand S, Worns MA, Barreiros AP, Galle PR, Teufel A. A systems biology perspective on cholangiocellular carcinoma development: focus on MAPK-signaling and the extracellular environment. J Hepatol 2009, 50(6):1122-1131. 10.1016/j.jhep.2009.01.024, 19395114.
-
(2009)
J Hepatol
, vol.50
, Issue.6
, pp. 1122-1131
-
-
Wang, C.1
Maass, T.2
Krupp, M.3
Thieringer, F.4
Strand, S.5
Worns, M.A.6
Barreiros, A.P.7
Galle, P.R.8
Teufel, A.9
-
11
-
-
34547630482
-
Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray
-
10.1128/JCM.00364-07, 1933008, 17494722
-
Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. J Clin Microbiol 2007, 45(7):2340-2343. 10.1128/JCM.00364-07, 1933008, 17494722.
-
(2007)
J Clin Microbiol
, vol.45
, Issue.7
, pp. 2340-2343
-
-
Chiu, C.Y.1
Alizadeh, A.A.2
Rouskin, S.3
Merker, J.D.4
Yeh, E.5
Yagi, S.6
Schnurr, D.7
Patterson, B.K.8
Ganem, D.9
DeRisi, J.L.10
-
12
-
-
33846113818
-
Panmicrobial oligonucleotide array for diagnosis of infectious diseases
-
10.3201/eid1301.060837, 2725825, 17370518
-
Palacios G, Quan PL, Jabado OJ, Conlan S, Hirschberg DL, Liu Y, Zhai J, Renwick N, Hui J, Hegyi H, et al. Panmicrobial oligonucleotide array for diagnosis of infectious diseases. Emerg Infect Dis 2007, 13(1):73-81. 10.3201/eid1301.060837, 2725825, 17370518.
-
(2007)
Emerg Infect Dis
, vol.13
, Issue.1
, pp. 73-81
-
-
Palacios, G.1
Quan, P.L.2
Jabado, O.J.3
Conlan, S.4
Hirschberg, D.L.5
Liu, Y.6
Zhai, J.7
Renwick, N.8
Hui, J.9
Hegyi, H.10
-
13
-
-
38349144586
-
Comprehensive viral oligonucleotide probe design using conserved protein regions
-
10.1093/nar/gkm1106, 2248741, 18079152
-
Jabado OJ, Liu Y, Conlan S, Quan PL, Hegyi H, Lussier Y, Briese T, Palacios G, Lipkin WI. Comprehensive viral oligonucleotide probe design using conserved protein regions. Nucleic Acids Res 2008, 36(1):e3. 10.1093/nar/gkm1106, 2248741, 18079152.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.1
-
-
Jabado, O.J.1
Liu, Y.2
Conlan, S.3
Quan, P.L.4
Hegyi, H.5
Lussier, Y.6
Briese, T.7
Palacios, G.8
Lipkin, W.I.9
-
14
-
-
63049117330
-
Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays
-
10.1186/1471-2105-10-S2-S11, 2646242, 19208186
-
Liu Y, Sam L, Li J, Lussier YA. Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays. BMC Bioinformatics 2009, 10(Suppl 2):S11. 10.1186/1471-2105-10-S2-S11, 2646242, 19208186.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL 2
-
-
Liu, Y.1
Sam, L.2
Li, J.3
Lussier, Y.A.4
-
15
-
-
0037396730
-
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro
-
10.1101/gr.461403, 430163, 12654719
-
Camon E, Magrane M, Barrell D, Binns D, Fleischmann W, Kersey P, Mulder N, Oinn T, Maslen J, Cox A, et al. The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. Genome Res 2003, 13(4):662-672. 10.1101/gr.461403, 430163, 12654719.
-
(2003)
Genome Res
, vol.13
, Issue.4
, pp. 662-672
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Binns, D.4
Fleischmann, W.5
Kersey, P.6
Mulder, N.7
Oinn, T.8
Maslen, J.9
Cox, A.10
-
16
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
10.1093/nar/30.1.207, 99122, 11752295
-
Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30(1):207-210. 10.1093/nar/30.1.207, 99122, 11752295.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
17
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
18
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
10.1089/106652701753307520, 11747616
-
Wolfinger RD, Gibson G, Wolfinger ED, Bennett L, Hamadeh H, Bushel P, Afshari C, Paules RS. Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol 2001, 8(6):625-637. 10.1089/106652701753307520, 11747616.
-
(2001)
J Comput Biol
, vol.8
, Issue.6
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
19
-
-
33750814849
-
Angiogenesis-independent tumor growth mediated by stem-like cancer cells
-
10.1073/pnas.0607668103, 1618812, 17056721
-
Sakariassen PO, Prestegarden L, Wang J, Skaftnesmo KO, Mahesparan R, Molthoff C, Sminia P, Sundlisaeter E, Misra A, Tysnes BB, et al. Angiogenesis-independent tumor growth mediated by stem-like cancer cells. Proc Natl Acad Sci U S A 2006, 103(44):16466-16471. 10.1073/pnas.0607668103, 1618812, 17056721.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.44
, pp. 16466-16471
-
-
Sakariassen, P.O.1
Prestegarden, L.2
Wang, J.3
Skaftnesmo, K.O.4
Mahesparan, R.5
Molthoff, C.6
Sminia, P.7
Sundlisaeter, E.8
Misra, A.9
Tysnes, B.B.10
-
20
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
10.1093/bioinformatics/btl567, 17098774
-
Falcon S, Gentleman R. Using GOstats to test gene lists for GO term association. Bioinformatics 2007, 23(2):257-258. 10.1093/bioinformatics/btl567, 17098774.
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
21
-
-
13844255555
-
Angiotensin type 1a receptor signaling-dependent induction of vascular endothelial growth factor in stroma is relevant to tumor-associated angiogenesis and tumor growth
-
10.1093/carcin/bgh324, 15637093
-
Fujita M, Hayashi I, Yamashina S, Fukamizu A, Itoman M, Majima M. Angiotensin type 1a receptor signaling-dependent induction of vascular endothelial growth factor in stroma is relevant to tumor-associated angiogenesis and tumor growth. Carcinogenesis 2005, 26(2):271-279. 10.1093/carcin/bgh324, 15637093.
-
(2005)
Carcinogenesis
, vol.26
, Issue.2
, pp. 271-279
-
-
Fujita, M.1
Hayashi, I.2
Yamashina, S.3
Fukamizu, A.4
Itoman, M.5
Majima, M.6
-
22
-
-
84888275483
-
BiomedLEE: a natural-language processor for extracting and representing phenotypes, underlying molecular mechanisms and their relationships
-
Lussier Y, Friedman C. BiomedLEE: a natural-language processor for extracting and representing phenotypes, underlying molecular mechanisms and their relationships. In: ISMB: 2007 2007,
-
(2007)
In: ISMB: 2007
-
-
Lussier, Y.1
Friedman, C.2
-
23
-
-
84888285022
-
Tumor Microenvironment Think Tank
-
Tumor Microenvironment Think Tank. , http://www.cancer.gov/think-tanks-cancer-biology/page3
-
-
-
|