메뉴 건너뛰기




Volumn 60, Issue 3, 2010, Pages 195-202

Spatial structure of microsatellite variability within and among populations of wild radish Raphanus sativus L. var. hortensis Backer f. raphanistroides Makino (Brassicaceae) in Japan

Author keywords

Genetic diversity and differentiation; Microsatellites; Raphanus sativus L. var. hortensis backer f. raphanistroides Makino; Spatial genetic structure; Wild radish

Indexed keywords

BRASSICACEAE; RAPHANUS SATIVUS;

EID: 78049450592     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.60.195     Document Type: Article
Times cited : (9)

References (44)
  • 1
    • 0038531041 scopus 로고    scopus 로고
    • Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, populations in Jordan
    • Baek, H.J., A. Beharav and E. Nevo (2003) Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, populations in Jordan. Theor. Appl. Genet. 106: 397-410.
    • (2003) Theor. Appl. Genet , vol.106 , pp. 397-410
    • Baek, H.J.1    Beharav, A.2    Nevo, E.3
  • 2
    • 0033374042 scopus 로고    scopus 로고
    • Do plant populations purge their genetic load? Effects of population size and mating history on inbreeding depression
    • Byers, D.L. and D.M. Waller (1999) Do plant populations purge their genetic load? Effects of population size and mating history on inbreeding depression. Annu. Rev. Ecol. Syst. 30: 479-513.
    • (1999) Annu. Rev. Ecol. Syst , vol.30 , pp. 479-513
    • Byers, D.L.1    Waller, D.M.2
  • 3
    • 0036961288 scopus 로고    scopus 로고
    • Purging the genetic load: A review of the experimental evidence
    • Crnokrak, P. and S.C.H. Barrett (2002) Purging the genetic load: a review of the experimental evidence. Evolution 56: 2347-2358.
    • (2002) Evolution , vol.56 , pp. 2347-2358
    • Crnokrak, P.1    Barrett, S.C.H.2
  • 4
    • 0022226034 scopus 로고
    • Interpopulation gene flow by pollen in wild radish, Raphanus sativus
    • Ellstrand, N.C. and D.L. Marshall (1985) Interpopulation gene flow by pollen in wild radish, Raphanus sativus. Am. Nat. 126: 606-616.
    • (1985) Am. Nat , vol.126 , pp. 606-616
    • Ellstrand, N.C.1    Marshall, D.L.2
  • 5
    • 0041989687 scopus 로고    scopus 로고
    • Spatial analysis of genetic diversity as a tool for plant conservation
    • Escudero, A., J.M. Iriondo and M.E. Torres (2003) Spatial analysis of genetic diversity as a tool for plant conservation. Biol. Conserv. 113: 351-365.
    • (2003) Biol. Conserv , vol.113 , pp. 351-365
    • Escudero, A.1    Iriondo, J.M.2    Torres, M.E.3
  • 6
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., P.E. Smouse and J.M. Quattro (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 7
    • 0348087039 scopus 로고    scopus 로고
    • Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel
    • Fahima, T., M.S. Röder, K. Wendehake, V.M. Kirzhner and E. Nevo (2002) Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel. Theor. Appl. Genet. 104: 17-29.
    • (2002) Theor. Appl. Genet , vol.104 , pp. 17-29
    • Fahima, T.1    Röder, M.S.2    Wendehake, K.3    Kirzhner, V.M.4    Nevo, E.5
  • 8
    • 0003437299 scopus 로고    scopus 로고
    • Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein, J. (2004) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle
    • (2004) PHYLIP (Phylogeny Inference Package) Version 3.6
    • Felsenstein, J.1
  • 9
    • 0036988616 scopus 로고    scopus 로고
    • Assessment of population genetic structure in common wild rice Oryza rufipogon Griff. using microsatellite and allozyme markers
    • Gao, L.-Z., B.A. Schaal, C.-H. Zhang, J.-Z. Jia and Y.-S. Dong (2002) Assessment of population genetic structure in common wild rice Oryza rufipogon Griff. using microsatellite and allozyme markers. Theor. Appl. Genet. 106: 173-180.
    • (2002) Theor. Appl. Genet , vol.106 , pp. 173-180
    • Gao, L.-Z.1    Schaal, B.A.2    Zhang, C.-H.3    Jia, J.-Z.4    Dong, Y.-S.5
  • 11
    • 0036899010 scopus 로고    scopus 로고
    • SPAGeDi: A versatile computer program to analyse spatial genetic structure at the individual or population level
    • Hardy, O.J. and X. Vekemans (2002) SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population level. Mol. Ecol. Notes 2: 618-620.
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 618-620
    • Hardy, O.J.1    Vekemans, X.2
  • 12
    • 0001622962 scopus 로고
    • Towards a rational classification of cultivated plants
    • Harlan, J. and J. de Wet (1971) Towards a rational classification of cultivated plants. Taxon 20: 509-517.
    • (1971) Taxon , vol.20 , pp. 509-517
    • Harlan, J.1    de Wet, J.2
  • 13
    • 0035069711 scopus 로고    scopus 로고
    • Allozyme diversity and population structure of Japanese and Korean populations of wild radish, Raphanus sativus var. hortensis f. raphanistroides (Brassicaceae)
    • Huh, M.K. and O. Ohnishi (2001) Allozyme diversity and population structure of Japanese and Korean populations of wild radish, Raphanus sativus var. hortensis f. raphanistroides (Brassicaceae). Genes Genet. Syst. 76: 15-23.
    • (2001) Genes Genet. Syst , vol.76 , pp. 15-23
    • Huh, M.K.1    Ohnishi, O.2
  • 14
    • 0036063904 scopus 로고    scopus 로고
    • Genetic diversity and genetic relationships of East Asian natural populations of wild radish revealed by AFLP
    • Huh, M.K. and O. Ohnishi (2002) Genetic diversity and genetic relationships of East Asian natural populations of wild radish revealed by AFLP. Breed. Sci. 52: 79-88.
    • (2002) Breed. Sci , vol.52 , pp. 79-88
    • Huh, M.K.1    Ohnishi, O.2
  • 15
    • 0041848294 scopus 로고    scopus 로고
    • Fine scale genetic structure in a wild soybean (Glycine soja) population and the implications for conservation
    • Jin, Y., T. He and B.R. Lu (2003) Fine scale genetic structure in a wild soybean (Glycine soja) population and the implications for conservation. New Phytol. 159: 513-519.
    • (2003) New Phytol , vol.159 , pp. 513-519
    • Jin, Y.1    He, T.2    Lu, B.R.3
  • 16
    • 33645017202 scopus 로고    scopus 로고
    • Population genetic structure of Japanese wild soybean (Glycine soja) based on microsatellite variation
    • Kuroda, Y., A. Kaga, N. Tomooka and A. Voughan (2006) Population genetic structure of Japanese wild soybean (Glycine soja) based on microsatellite variation. Mol. Ecol. 15: 959-974.
    • (2006) Mol. Ecol , vol.15 , pp. 959-974
    • Kuroda, Y.1    Kaga, A.2    Tomooka, N.3    Voughan, A.4
  • 17
    • 0030794667 scopus 로고    scopus 로고
    • A comparison of population differentiation across four classes of gene marker in limber pine (Pinus flexilis James)
    • Latta, R.G. and J.B. Mitton (1997) A comparison of population differentiation across four classes of gene marker in limber pine (Pinus flexilis James). Genetics 146: 1153-1163.
    • (1997) Genetics , vol.146 , pp. 1153-1163
    • Latta, R.G.1    Mitton, J.B.2
  • 18
    • 0036766748 scopus 로고    scopus 로고
    • Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism
    • Launey, S., C. Ledu, P. Boudry, F. Bonhomme and Y. Naciri-Graven (2002) Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism. J. Hered. 93: 331-338.
    • (2002) J. Hered , vol.93 , pp. 331-338
    • Launey, S.1    Ledu, C.2    Boudry, P.3    Bonhomme, F.4    Naciri-Graven, Y.5
  • 19
    • 0034047552 scopus 로고    scopus 로고
    • Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)?
    • Lemaire, C., G. Allegrucci, M. Naciri, L. Bahri-Sfar, H. Kara and F. Bonhomme (2000) Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)? Mol. Ecol. 9: 457-467.
    • (2000) Mol. Ecol , vol.9 , pp. 457-467
    • Lemaire, C.1    Allegrucci, G.2    Naciri, M.3    Bahri-Sfar, L.4    Kara, H.5    Bonhomme, F.6
  • 21
    • 0842285721 scopus 로고    scopus 로고
    • In situ conservation of crop wild relatives: Status and trends
    • Meilleur, B.A. and T. Hodgkin (2004) In situ conservation of crop wild relatives: status and trends. Biodiv. Conserv. 13: 663-684.
    • (2004) Biodiv. Conserv , vol.13 , pp. 663-684
    • Meilleur, B.A.1    Hodgkin, T.2
  • 22
    • 0000655270 scopus 로고
    • Genetic distance between populations
    • Nei, M. (1972) Genetic distance between populations. Am. Nat. 106: 283-292.
    • (1972) Am. Nat , vol.106 , pp. 283-292
    • Nei, M.1
  • 24
    • 0033053149 scopus 로고    scopus 로고
    • Chlorophyll-deficient and several morphological genes concealed in Japanese natural populations of wild radish, Raphanus sativus var. hortensis f. raphanistroides
    • Ohnishi, O. (1999) Chlorophyll-deficient and several morphological genes concealed in Japanese natural populations of wild radish, Raphanus sativus var. hortensis f. raphanistroides. Genes Genet. Syst. 74: 1-7.
    • (1999) Genes Genet. Syst , vol.74 , pp. 1-7
    • Ohnishi, O.1
  • 25
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism
    • Raymond, M. and F. Rousset (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249.
    • (1995) J. Hered , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 26
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
    • Rousset, F. (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219-1228.
    • (1997) Genetics , vol.145 , pp. 1219-1228
    • Rousset, F.1
  • 27
    • 36849080837 scopus 로고    scopus 로고
    • Genepop'007: A complete reimplementation of the Genepop software for Windows and Linux
    • Rousset, F. (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Res. 8: 103-106.
    • (2008) Mol. Ecol. Res , vol.8 , pp. 103-106
    • Rousset, F.1
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and M. Nei (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0005875885 scopus 로고    scopus 로고
    • Genetic structure of three orchid species with contrasting breeding systems using RAPD and allozyme markers
    • Sun, M. and K.C. Wong (2001) Genetic structure of three orchid species with contrasting breeding systems using RAPD and allozyme markers. Am. J. Bot. 88: 2180-2188.
    • (2001) Am. J. Bot , vol.88 , pp. 2180-2188
    • Sun, M.1    Wong, K.C.2
  • 31
    • 0026658330 scopus 로고
    • Spatial autocorrelation analysis of allozyme variants within local sites of wild radish population
    • Tokunaga, T. and O. Ohnishi (1992) Spatial autocorrelation analysis of allozyme variants within local sites of wild radish population. Jpn. J. Genet. 67: 209-216.
    • (1992) Jpn. J. Genet , vol.67 , pp. 209-216
    • Tokunaga, T.1    Ohnishi, O.2
  • 32
    • 0028252083 scopus 로고
    • Genetic variation and population differentiation in natural populations of Cryptomeria japonica
    • Tomaru, N., Y. Tsumura and K. Ohba (1994) Genetic variation and population differentiation in natural populations of Cryptomeria japonica. Plant Species Biol. 9: 191-199.
    • (1994) Plant Species Biol , vol.9 , pp. 191-199
    • Tomaru, N.1    Tsumura, Y.2    Ohba, K.3
  • 33
    • 0141858387 scopus 로고    scopus 로고
    • Genetic structure of an endangered plant, Antirrhinum microphyllum (Scrophulariaceae): Allozyme and RAPD analysis
    • Torres, E., M. Iriondo and C. Pérez (2003) Genetic structure of an endangered plant, Antirrhinum microphyllum (Scrophulariaceae): allozyme and RAPD analysis. Am. J. Bot. 90: 85-92.
    • (2003) Am. J. Bot , vol.90 , pp. 85-92
    • Torres, E.1    Iriondo, M.2    Pérez, C.3
  • 34
    • 0032954056 scopus 로고    scopus 로고
    • Genetic diversity of Cryptomeria japonica using co-dominant DNA markers based on sequencedtagged sites
    • Tsumura, Y. and N. Tomaru (1999) Genetic diversity of Cryptomeria japonica using co-dominant DNA markers based on sequencedtagged sites. Theor. Appl. Genet. 98: 396-404.
    • (1999) Theor. Appl. Genet , vol.98 , pp. 396-404
    • Tsumura, Y.1    Tomaru, N.2
  • 35
    • 4344606590 scopus 로고    scopus 로고
    • Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data
    • Van Oosterhout, C., W.F. Hutchinson, D.P.M. Wills and P. Shipley (2004) Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
    • (2004) Mol. Ecol. Notes , vol.4 , pp. 535-538
    • van Oosterhout, C.1    Hutchinson, W.F.2    Wills, D.P.M.3    Shipley, P.4
  • 36
    • 1642396359 scopus 로고    scopus 로고
    • New insights from fine-scale spatial genetic structure analyses in plant populations
    • Vekemans, X. and O.J. Hardy (2004) New insights from fine-scale spatial genetic structure analyses in plant populations. Mol. Ecol. 13: 921-935.
    • (2004) Mol. Ecol , vol.13 , pp. 921-935
    • Vekemans, X.1    Hardy, O.J.2
  • 37
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright, S. (1943) Isolation by distance. Genetics 28: 114-138.
    • (1943) Genetics , vol.28 , pp. 114-138
    • Wright, S.1
  • 38
    • 33645853746 scopus 로고    scopus 로고
    • Inferring population history from fine-scale spatial genetic analysis in Oryza rifupogon (Poaceae)
    • Xu, X., B.R. Lu, Y.H. Chen, M. Xu, J. Rong, P. Ye, J. Chen and Z. Song (2006) Inferring population history from fine-scale spatial genetic analysis in Oryza rifupogon (Poaceae). Mol. Ecol.15: 1535-1544.
    • (2006) Mol. Ecol , vol.15 , pp. 1535-1544
    • Xu, X.1    Lu, B.R.2    Chen, Y.H.3    Xu, M.4    Rong, J.5    Ye, P.6    Chen, J.7    Song, Z.8
  • 39
    • 0028080620 scopus 로고
    • Molecular and biological studies on male-sterile cytoplasm in the Cruciferae
    • I. The origin and distribution of Ogura male-sterile cytoplasm in Japanese wild radishes (Raphanus sativus L.) revealed by PCR-aided assay of their mitochondrial DNAs
    • Yamagishi, H. and T. Terachi (1994) Molecular and biological studies on male-sterile cytoplasm in the Cruciferae. I. The origin and distribution of Ogura male-sterile cytoplasm in Japanese wild radishes (Raphanus sativus L.) revealed by PCR-aided assay of their mitochondrial DNAs. Theor. Appl. Genet. 87: 996-1000.
    • (1994) Theor. Appl. Genet , vol.87 , pp. 996-1000
    • Yamagishi, H.1    Terachi, T.2
  • 40
    • 0029823407 scopus 로고    scopus 로고
    • Molecular and biological studies on male-sterile cytoplasm in the Cruciferae. III. Distribution of Ogura-type cytoplasm among Japanese wild radishes and Asian radish cultivars
    • Yamagishi, H. and T. Terachi (1996) Molecular and biological studies on male-sterile cytoplasm in the Cruciferae. III. Distribution of Ogura-type cytoplasm among Japanese wild radishes and Asian radish cultivars. Theor. Appl. Genet. 93: 325-332.
    • (1996) Theor. Appl. Genet , vol.93 , pp. 325-332
    • Yamagishi, H.1    Terachi, T.2
  • 41
    • 0000973810 scopus 로고    scopus 로고
    • Genetic relationships among Japanese wild radishes (Raphanus sativus f. Faphanistroides Makino), cultivated radishes and R. raphanistrum revealed by RAPD analysis
    • Yamagishi, H., M. Tateishi, T. Terachi and S. Murayama (1998) Genetic relationships among Japanese wild radishes (Raphanus sativus f. Faphanistroides Makino), cultivated radishes and R. raphanistrum revealed by RAPD analysis. J. Jpn. Soc. Hort. Sci. 67: 526-531.
    • (1998) J. Jpn. Soc. Hort. Sci , vol.67 , pp. 526-531
    • Yamagishi, H.1    Tateishi, M.2    Terachi, T.3    Murayama, S.4
  • 42
    • 78049437844 scopus 로고
    • Latitudinal cline and intrapopulational differentiation in leaf shape of wild radish in Japan
    • Yamaguchi, H. (1987) Latitudinal cline and intrapopulational differentiation in leaf shape of wild radish in Japan. Jpn. J. Breed. 37: 54-65.
    • (1987) Jpn. J. Breed , vol.37 , pp. 54-65
    • Yamaguchi, H.1
  • 43
    • 12744274680 scopus 로고    scopus 로고
    • Chloroplast DNA variations of cultivated radish and its wild relatives
    • Yamane, K., N. Lu and O. Ohnishi (2005) Chloroplast DNA variations of cultivated radish and its wild relatives. Plant Sci. 168: 627-634.
    • (2005) Plant Sci , vol.168 , pp. 627-634
    • Yamane, K.1    Lu, N.2    Ohnishi, O.3
  • 44
    • 62249205058 scopus 로고    scopus 로고
    • Multiple origin and high genetic diversity of cultivated radish inferred from polymorphism in chloroplast simple sequence repeats
    • Yamane, K., N. Lu and O. Ohnishi (2009) Multiple origin and high genetic diversity of cultivated radish inferred from polymorphism in chloroplast simple sequence repeats. Breed. Sci. 59: 55-65.
    • (2009) Breed. Sci , vol.59 , pp. 55-65
    • Yamane, K.1    Lu, N.2    Ohnishi, O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.