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Volumn 5, Issue 9, 2010, Pages

Genomic analysis of carbon monoxide utilization and butanol production by clostridium carboxidivorans strain P7T

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ACETONE; ACETYL COENZYME A; ALCOHOL; BUTANOL; BUTYRIC ACID; CARBON DIOXIDE; CARBON MONOXIDE; BACTERIAL PROTEIN;

EID: 77958598358     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013033     Document Type: Article
Times cited : (125)

References (44)
  • 1
    • 33746445877 scopus 로고    scopus 로고
    • Butanol - rediscovering a renewable fuel
    • 01-2006
    • Schwarz WH, Gapes JR (2006) Butanol - rediscovering a renewable fuel. BioWorld Europe 01-2006: 16-19.
    • (2006) BioWorld Europe , pp. 16-19
    • Schwarz, W.H.1    Gapes, J.R.2
  • 2
    • 0344888025 scopus 로고
    • Acidic Conditions Are Not Obligatory for Onset of Butanol Formation by Clostridium beijerinckii (Synonym, C. butylicum)
    • George HA, Chen JS (1983) Acidic Conditions Are Not Obligatory for Onset of Butanol Formation by Clostridium beijerinckii (Synonym, C. butylicum). Appl Environ Microbiol 46: 321-327.
    • (1983) Appl Environ Microbiol , vol.46 , pp. 321-327
    • George, H.A.1    Chen, J.S.2
  • 3
    • 0020699648 scopus 로고
    • Acetone, Isopropanol, and Butanol Production by Clostridium beijerinckii (syn. Clostridium butylicum) and Clostridium aurantibutyricum
    • George HA, Johnson JL, Moore WE, Holdeman LV, Chen JS (1983) Acetone, Isopropanol, and Butanol Production by Clostridium beijerinckii (syn. Clostridium butylicum) and Clostridium aurantibutyricum. Appl Environ Microbiol 45: 1160-1163.
    • (1983) Appl Environ Microbiol , vol.45 , pp. 1160-1163
    • George, H.A.1    Johnson, J.L.2    Moore, W.E.3    Holdeman, L.V.4    Chen, J.S.5
  • 4
    • 0021170134 scopus 로고
    • Formation of n-Butanol from d- Glucose by Strains of the "Clostridium tetanomorphum" Group
    • Gottwald M, Hippe H, Gottschalk G (1984) Formation of n-Butanol from d- Glucose by Strains of the "Clostridium tetanomorphum" Group. Appl Environ Microbiol 48: 573-576.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 573-576
    • Gottwald, M.1    Hippe, H.2    Gottschalk, G.3
  • 5
    • 0022970603 scopus 로고
    • Acetone-butanol fermentation revisited
    • Jones DT, Woods DR (1986) Acetone-butanol fermentation revisited. Microbiol Rev 50: 484-524.
    • (1986) Microbiol Rev , vol.50 , pp. 484-524
    • Jones, D.T.1    Woods, D.R.2
  • 6
    • 0001583680 scopus 로고
    • Solvent production
    • In: Minton NP, Clarke DJ, eds., New York N.Y.: Plenum Press
    • Jones DT, Woods DR (1989) Solvent production. In: Minton NP, Clarke DJ, eds. Clostridia. New YorkN.Y.: Plenum Press. pp 105-144.
    • (1989) Clostridia , pp. 105-144
    • Jones, D.T.1    Woods, D.R.2
  • 7
    • 34249981232 scopus 로고    scopus 로고
    • Bioproduction of butanol from biomass: From genes to bioreactors
    • Ezeji TC, Qureshi N, Blaschek HP (2007) Bioproduction of butanol from biomass: from genes to bioreactors. Curr Opin Biotechnol 18: 220-227.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 220-227
    • Ezeji, T.C.1    Qureshi, N.2    Blaschek, H.P.3
  • 8
    • 0035196515 scopus 로고    scopus 로고
    • Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov
    • Keis S, Shaheen R, Jones DT (2001) Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov. Int J Syst Evol Microbiol 51: 2095-2103.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 2095-2103
    • Keis, S.1    Shaheen, R.2    Jones, D.T.3
  • 9
    • 57049150206 scopus 로고    scopus 로고
    • Selection and optimization of microbial hosts for biofuels production
    • Fischer CR, Klein-Marcuschamer D, Stephanopoulos G (2008) Selection and optimization of microbial hosts for biofuels production. Metab Eng 10: 295-304.
    • (2008) Metab Eng , vol.10 , pp. 295-304
    • Fischer, C.R.1    Klein-Marcuschamer, D.2    Stephanopoulos, G.3
  • 10
    • 34249931692 scopus 로고    scopus 로고
    • Microbiology of synthesis gas fermentation for biofuel production
    • Henstra AM, Sipma J, Rinzema A, Stams AJ (2007) Microbiology of synthesis gas fermentation for biofuel production. Curr Opin Biotechnol 18: 200-206.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 200-206
    • Henstra, A.M.1    Sipma, J.2    Rinzema, A.3    Stams, A.J.4
  • 11
    • 0025874014 scopus 로고
    • Evidence for Production of n-Butanol from Carbon Monoxide by Butyribacterium methylotrophicum
    • Grethlein AJ, Worden RM, Jain MK, Datta R (1991) Evidence for Production of n-Butanol from Carbon Monoxide by Butyribacterium methylotrophicum. J Ferment Bioeng 72: 58-60.
    • (1991) J Ferment Bioeng , vol.72 , pp. 58-60
    • Grethlein, A.J.1    Worden, R.M.2    Jain, M.K.3    Datta, R.4
  • 12
    • 0028298999 scopus 로고
    • Clostridium autoethanogenum, sp. nov., an anaerobic bacterium that produces ethanol from carbon monoxide
    • Abrini J, Naveau H, Nyns E-J (1994) Clostridium autoethanogenum, sp. nov., an anaerobic bacterium that produces ethanol from carbon monoxide. Arch Microbiol 161: 345-351.
    • (1994) Arch Microbiol , vol.161 , pp. 345-351
    • Abrini, J.1    Naveau, H.2    Nyns, E.-J.3
  • 13
    • 62949105310 scopus 로고    scopus 로고
    • Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells
    • Cotter JL, Chinn MS, Grunden AM (2009) Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells. Bioprocess Biosyst Eng 32: 369-380.
    • (2009) Bioprocess Biosyst Eng , vol.32 , pp. 369-380
    • Cotter, J.L.1    Chinn, M.S.2    Grunden, A.M.3
  • 14
    • 77949875923 scopus 로고    scopus 로고
    • Biomass-derived syngas fermentation into biofuels: Opportunities and challenges
    • Munasinghe PC, Khanal SK (2010) Biomass-derived syngas fermentation into biofuels: Opportunities and challenges. Bioresour Technol 101: 5013-5022.
    • (2010) Bioresour Technol , vol.101 , pp. 5013-5022
    • Munasinghe, P.C.1    Khanal, S.K.2
  • 15
    • 26244461228 scopus 로고    scopus 로고
    • Clostridium carboxidivorans sp. nov., a solvent-producing Clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov
    • Liou JS, Balkwill DL, Drake GR, Tanner RS (2005) Clostridium carboxidivorans sp. nov., a solvent-producing Clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov. Int J Syst Evol Microbiol 55: 2085-2091.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2085-2091
    • Liou, J.S.1    Balkwill, D.L.2    Drake, G.R.3    Tanner, R.S.4
  • 16
    • 0036026774 scopus 로고    scopus 로고
    • Formation of ethanol from carbon monoxide via a new microbial catalyst
    • Rajagopalan S, Datar RP, LR S (2002) Formation of ethanol from carbon monoxide via a new microbial catalyst. Biomass and Bioenergy 23: 487-493.
    • (2002) Biomass and Bioenergy , vol.23 , pp. 487-493
    • Rajagopalan, S.1    Datar, R.P.2    Lr, S.3
  • 18
    • 53049086510 scopus 로고    scopus 로고
    • Engineering solventogenic clostridia
    • Papoutsakis ET (2008) Engineering solventogenic clostridia. Curr Opin Biotechnol 19: 420-429.
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 420-429
    • Papoutsakis, E.T.1
  • 20
    • 40549120596 scopus 로고    scopus 로고
    • The RAST Server: Rapid annotations using subsystems technology
    • Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1    Bartels, D.2    Best, A.A.3    DeJongh, M.4    Disz, T.5
  • 21
    • 54949153045 scopus 로고    scopus 로고
    • Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation
    • Ragsdale SW, Pierce E (2008) Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation. Biochim Biophys Acta 1784: 1873-1898.
    • (2008) Biochim Biophys Acta , vol.1784 , pp. 1873-1898
    • Ragsdale, S.W.1    Pierce, E.2
  • 22
    • 33745550745 scopus 로고    scopus 로고
    • The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
    • Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton N, et al. (2006) The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nat Genet 38: 779-786.
    • (2006) Nat Genet , vol.38 , pp. 779-786
    • Sebaihia, M.1    Wren, B.W.2    Mullany, P.3    Fairweather, N.F.4    Minton, N.5
  • 23
    • 51649124894 scopus 로고    scopus 로고
    • The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
    • Pierce E, Xie G, Barabote RD, Saunders E, Han CS, et al. (2008) The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). Environ Microbiol 10: 2550-2573.
    • (2008) Environ Microbiol , vol.10 , pp. 2550-2573
    • Pierce, E.1    Xie, G.2    Barabote, R.D.3    Saunders, E.4    Han, C.S.5
  • 24
    • 77955610491 scopus 로고    scopus 로고
    • Clostridium ljungdahlii represents a microbial production platform based on syngas
    • Kopke M, Held C, Hujer S, Liesegang H, Wiezer A, et al. (2010) Clostridium ljungdahlii represents a microbial production platform based on syngas. Proc Natl Acad Sci U S A 107: 13087-13092.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 13087-13092
    • Kopke, M.1    Held, C.2    Hujer, S.3    Liesegang, H.4    Wiezer, A.5
  • 26
    • 41349119857 scopus 로고    scopus 로고
    • Enzymology of the wood-Ljungdahl pathway of acetogenesis
    • Ragsdale SW (2008) Enzymology of the wood-Ljungdahl pathway of acetogenesis. Ann N Y Acad Sci 1125: 129-136.
    • (2008) Ann N Y Acad Sci , vol.1125 , pp. 129-136
    • Ragsdale, S.W.1
  • 27
    • 0026554422 scopus 로고
    • Parameters Affecting Solvent Production by Clostridium pasteurianum
    • Dabrock B, Bahl H, Gottschalk G (1992) Parameters Affecting Solvent Production by Clostridium pasteurianum. Appl Environ Microbiol 58: 1233-1239.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1233-1239
    • Dabrock, B.1    Bahl, H.2    Gottschalk, G.3
  • 28
    • 0028201690 scopus 로고
    • Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol
    • Vasconcelos I, Girbal L, Soucaille P (1994) Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol. J Bacteriol 176: 1443-1450.
    • (1994) J Bacteriol , vol.176 , pp. 1443-1450
    • Vasconcelos, I.1    Girbal, L.2    Soucaille, P.3
  • 29
    • 0000252362 scopus 로고
    • Expression of Solvent- Forming Enzymes and Onset of Solvent Production in Batch Cultures of Clostridium beijerinckii (''Clostridium butylicum'')
    • Yan RT, Zhu CX, Golemboski C, Chen JS (1988) Expression of Solvent- Forming Enzymes and Onset of Solvent Production in Batch Cultures of Clostridium beijerinckii (''Clostridium butylicum''). Appl Environ Microbiol 54: 642-648.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 642-648
    • Yan, R.T.1    Zhu, C.X.2    Golemboski, C.3    Chen, J.S.4
  • 31
    • 0027382981 scopus 로고
    • Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824
    • Walter KA, Nair RV, Cary JW, Bennett GN, Papoutsakis ET (1993) Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824. Gene 134: 107-111.
    • (1993) Gene , vol.134 , pp. 107-111
    • Walter, K.A.1    Nair, R.V.2    Cary, J.W.3    Bennett, G.N.4    Papoutsakis, E.T.5
  • 32
    • 0033013654 scopus 로고    scopus 로고
    • Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration
    • Chen CK, Blaschek HP (1999) Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration. Appl Environ Microbiol 65: 499-505.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 499-505
    • Chen, C.K.1    Blaschek, H.P.2
  • 33
    • 0029762151 scopus 로고    scopus 로고
    • Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824
    • Boynton ZL, Bennett GN, Rudolph FB (1996) Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 62: 2758-2766.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2758-2766
    • Boynton, Z.L.1    Bennett, G.N.2    Rudolph, F.B.3
  • 34
    • 0027957210 scopus 로고
    • Molecular characterization of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824
    • Nair RV, Bennett GN, Papoutsakis ET (1994) Molecular characterization of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824. J Bacteriol 176: 871-885.
    • (1994) J Bacteriol , vol.176 , pp. 871-885
    • Nair, R.V.1    Bennett, G.N.2    Papoutsakis, E.T.3
  • 35
    • 84982586755 scopus 로고
    • Solventogenic enzymes of Clostridium acetobutylicum: Catalytic properties, genetic organization, and transcriptional regulation
    • Durre P, Fischer RJ, Kuhn A, Lorenz K, Schreiber W, et al. (1995) Solventogenic enzymes of Clostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation. FEMS Microbiol Rev 17: 251-262.
    • (1995) FEMS Microbiol Rev , vol.17 , pp. 251-262
    • Durre, P.1    Fischer, R.J.2    Kuhn, A.3    Lorenz, K.4    Schreiber, W.5
  • 36
    • 0036180998 scopus 로고    scopus 로고
    • Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824
    • Fontaine L, Meynial-Salles I, Girbal L, Yang X, Croux C, et al. (2002) Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824. J Bacteriol 184: 821-830.
    • (2002) J Bacteriol , vol.184 , pp. 821-830
    • Fontaine, L.1    Meynial-Salles, I.2    Girbal, L.3    Yang, X.4    Croux, C.5
  • 37
    • 0032703238 scopus 로고    scopus 로고
    • The ald gene, encoding a coenzyme Aacylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum
    • Toth J, Ismaiel AA, Chen JS (1999) The ald gene, encoding a coenzyme Aacylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum. Appl Environ Microbiol 65: 4973-4980.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4973-4980
    • Toth, J.1    Ismaiel, A.A.2    Chen, J.S.3
  • 38
    • 69949115521 scopus 로고    scopus 로고
    • Isolation of a new butanol-producing Clostridium strain: High level of hemicellulosic activity and structure of solventogenesis genes of a new Clostridium saccharobutylicum isolate
    • Berezina OV, Brandt A, Yarotsky S, Schwarz WH, Zverlov VV (2009) Isolation of a new butanol-producing Clostridium strain: high level of hemicellulosic activity and structure of solventogenesis genes of a new Clostridium saccharobutylicum isolate. Syst Appl Microbiol 32: 449-459.
    • (2009) Syst Appl Microbiol , vol.32 , pp. 449-459
    • Berezina, O.V.1    Brandt, A.2    Yarotsky, S.3    Schwarz, W.H.4    Zverlov, V.V.5
  • 39
    • 38049162218 scopus 로고    scopus 로고
    • Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli
    • Inui M, Suda M, Kimura S, Yasuda K, Suzuki H, et al. (2008) Expression of Clostridium acetobutylicum butanol synthetic genes in Escherichia coli. Appl Microbiol Biotechnol 77: 1305-1316.
    • (2008) Appl Microbiol Biotechnol , vol.77 , pp. 1305-1316
    • Inui, M.1    Suda, M.2    Kimura, S.3    Yasuda, K.4    Suzuki, H.5
  • 40
    • 0033156380 scopus 로고    scopus 로고
    • Metabolic flux analysis elucidates the importance of the acid-formation pathways in regulating solvent production by Clostridium acetobutylicum
    • Desai RP, Harris LM, Welker NE, Papoutsakis ET (1999) Metabolic flux analysis elucidates the importance of the acid-formation pathways in regulating solvent production by Clostridium acetobutylicum. Metab Eng 1: 206-213.
    • (1999) Metab Eng , vol.1 , pp. 206-213
    • Desai, R.P.1    Harris, L.M.2    Welker, N.E.3    Papoutsakis, E.T.4
  • 41
    • 0030922888 scopus 로고    scopus 로고
    • The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain
    • Cornillot E, Nair RV, Papoutsakis ET, Soucaille P (1997) The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain. J Bacteriol 179: 5442-5447.
    • (1997) J Bacteriol , vol.179 , pp. 5442-5447
    • Cornillot, E.1    Nair, R.V.2    Papoutsakis, E.T.3    Soucaille, P.4
  • 42
    • 0027460190 scopus 로고
    • Clostridium ljungdahlii sp. nov., an acetogenic species in clostridial rRNA homology group I
    • Tanner RS, Miller LM, Yang D (1993) Clostridium ljungdahlii sp. nov., an acetogenic species in clostridial rRNA homology group I. Int J Syst Bacteriol 43: 232-236.
    • (1993) Int J Syst Bacteriol , vol.43 , pp. 232-236
    • Tanner, R.S.1    Miller, L.M.2    Yang, D.3
  • 44
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5


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