Local conformation and dynamics of isoleucine in the collagenase cleavage site provide a recognition signal for matrix metalloproteinases

Journal of Biological Chemistry

Volumn 285, Issue 44, 2010, Pages 34181-34190

  Xiao, Jianxi ^a   Addabbo, Rayna M ^a   Lauer, Janelle L ^b   Fields, Gregg B ^b   Baum, Jean ^a  

^a RUTGERS UNIVERSITY   (United States)

^b UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLEAVAGE SITES; COLLAGEN TRIPLE HELIX; COLLAGENASE; DIRECTLY MODULATED; HOMOTRIMERS; KINETIC STUDY; LOCAL DYNAMICS; LOCAL INSTABILITY; MATRIX METALLOPROTEINASES; NMR STUDIES; PEPTIDE CHAIN; RECOGNITION SIGNALS; SEQUENCE ANALYSIS; SEQUENCE PATTERNS; SPECIFIC DISTRIBUTION;

ACIDS; AMINO ACIDS; CARBOXYLIC ACIDS; COLLAGEN; ULSI CIRCUITS;

PEPTIDES;

ALANINE; COLLAGEN TYPE 1; COLLAGEN TYPE 2; COLLAGEN TYPE 3; COLLAGENASE; GLYCINE; IMINO ACID; ISOLEUCINE; LEUCINE; MATRIX METALLOPROTEINASE; PROLINE;

AMINO ACID SEQUENCE; ARTICLE; COLLAGEN DEGRADATION; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME LOCALIZATION; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN CLEAVAGE; PROTEIN HYDROLYSIS; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; COLLAGENASES; HUMANS; HYDROGEN; HYDROLYSIS; ISOLEUCINE; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; MATRIX METALLOPROTEINASES; MODELS, CHEMICAL; MOLECULAR CONFORMATION; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN CONFORMATION;

EID: 77958575791     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.128355     Document Type: Article

References (64)

1. Visse, R., and Nagase, H. (2003) Circulation Res. 92, 827-839
2. Brinckerhoff, C. E., and Matrisian, L. M. (2002) Nat. Rev. Mol. Cell Biol. 3, 207-214
3. Cawston, T., Billington, C., Cleaver, C., Elliott, S., Hui, W., Koshy, P., Shingleton, B., and Rowan, A. (1999) Ann. N.Y. Acad. Sci. 878, 120-129
4. Baragi, V. M., Qiu, L., Gunja-Smith, Z., Woessner, J. F., Jr., Lesch, C. A., and Guglietta, A. (1997) Scand. J. Gastroenterol. 32, 419-426
5. Sternlicht, M. D., and Werb, Z. (2001) Annu. Rev. Cell Dev. Biol. 17, 463-516
6. Woessner, J. F. (1998) in Matrix Metalloproteinases (Parks, W. C., and Mecham, R. P., eds) Academic Press, San Diego
7. Riley, G. P., Harrall, R. L., Watson, P. G., Cawston, T. E., and Hazleman, B. L. (1995) Eye 9, 703-718
8. Shoulders, M. D., and Raines, R. T. (2009) Annu. Rev. Biochem. 78, 929-958
9. van der Rest, M., Aubert-Foucher, E., Dublet, B., Eichenberger, D., Font, B., and Goldschmidt, D. (1991) Biochem. Soc. Trans. 19, 820-824
10. Kielty, C. M., and Grant, M. E. (2002) in Connective Tissue and Its Heritable Disorders, Molecular, Genetic, and Medical Aspects (Royes, P. M., and Steinmann, B. U., eds) Wiley Liss, New York
11. Rich, A., and Crick, F. H. (1961) J. Mol. Biol. 3, 483-506
12. Ramachandran, G. N. (1967) in Treatise on Collagen (Ramachandran, G. N., ed) Academic Press, New York
13. Aimes, R. T., and Quigley, J. P. (1995) J. Biol. Chem. 270, 5872-5876
14. Fields, G. B. (1991) J Theor. Biol. 153, 585-602
15. Fields, G. B., Van Wart, H. E., and Birkedal-Hansen, H. (1987) J. Biol. Chem. 262, 6221-6226
16. Welgus, H. G., Jeffrey, J. J., and Eisen, A. Z. (1981) J. Biol. Chem. 256, 9511-9515
17. Welgus, H. G., Jeffrey, J. J., Stricklin, G. P., and Eisen, A. Z. (1982) J. Biol. Chem. 257, 11534-11539
18. Netzel-Arnett, S., Fields, G. B., Birkedal-Hansen, H., and Van Wart, H. E. (1991) J. Biol. Chem. 266, 6747-6755
19. Mallya, S. K., Mookhtiar, K. A., Gao, Y., Brew, K., Dioszegi, M., Birkedal- Hansen, H., and Van Wart, H. E. (1990) Biochemistry 29, 10628-10634
20. Lauer-Fields, J. L., Juska, D., and Fields, G. B. (2002) Biopolymers 66, 19-32
21. Miller, E. J., Harris, E. D., Jr., Chung, E., Finch, J. E., Jr., McCroskery, P. A., and Butler, W. T. (1976) Biochemistry 15, 787-792
22. Highberger, J. H., Corbett, C., and Gross, J. (1979) Biochem. Biophys. Res. Commun. 89, 202-208
23. Gross, J., Highberger, J. H., Johnson-Wint, B., and Biswas, C. (1980) in Collagenase in Normal and Pathological Connective Tissues (Woolley, D. E., and Evanson, J. M., eds) John Wiley & Sons, New York
24. Ryhänen, L., Zaragoza, E. J., and Uitto, J. (1983) Arch Biochem. Biophys. 223, 562-571
25. Miller, E. J., Finch, J. E., Jr., Chung, E., Butler, W. T., and Robertson, P. B. (1976) Arch. Biochem. Biophys. 173, 631-637
26. Hasty, K. A., Wu, H., Byrne, M., Goldring, M. B., Seyer, J. M., Jaenisch, R., Krane, S. M., and Mainardi, C. L. (1993) Matrix 13, 181-186
27. Wu, H. Byrne, M. H., Stacey, A., Goldring, M. B., Birkhead, J. R., Jaenisch, R., and Krane, S. M. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 5888-5892
28. Li, J., Brick, P., O'Hare, M. C., Skarzynski, T., Lloyd, L. F., Curry, V. A., Clark, I. M., Bigg, H. F., Hazleman, B. L., and Cawston, T. E. (1995) Structure 3, 541-549
29. Moy, F. J., Chanda, P. K., Cosmi, S., Pisano, M. R., Urbano, C., Wilhelm, J., and Powers, R. (1998) Biochemistry 37, 1495-1504
30. Bode, W., Fernandez-Catalan, C., Tschesche, H., Grams, F., Nagase, H., and Maskos, K. (1999) Cell Mol Life Sci 55, 639-652
31. Bode, W., Reinemer, P., Huber, R., Kleine, T., Schnierer, S., and Tschesche, H. (1994) The EMBO J. 13, 1263-1269
32. Chung, L., Dinakarpandian, D., Yoshida, N., Lauer-Fields, J. L., Fields, G. B., Visse, R., and Nagase, H. (2004) EMBO J. 23, 3020-3030
33. Stultz, C. M. (2002) J. Mol. Biol. 319, 997-1003
34. Salsas-Escat, R., and Stultz, C. M. (2010) Proteins 78, 325-335
35. Xiao, J., and Baum, J. (2009) J. Am. Chem. Soc. 131, 18194-18195
36. Li, Y., Brodsky, B., and Baum, J. (2009) J. Biol. Chem. 284, 20660-20667
37. Li, Y., Brodsky, B., and Baum, J. (2007) J. Biol. Chem. 282, 22699-22706
38. Madhan, B., Xiao, J., Thiagarajan, G., Baum, J., and Brodsky, B. (2008) J. Am. Chem. Soc. 130, 13520-13521
39. Thiagarajan, G., Li, Y., Mohs, A., Strafaci, C., Popiel, M., Baum, J., and Brodsky, B. (2008) J. Mol. Biol. 376, 736-748
40. Ottl, J., Battistuta, R., Pieper, M., Tschesche, H., Bode, W., Kühn, K., and Moroder, L. (1996) FEBS Lett. 398, 31-36
41. Lauer-Fields, J. L., Tuzinski, K. A., Shimokawa, K., Nagase, H., and Fields, G. B. (2000) J. Biol. Chem. 275, 13282-13290
42. Lauer-Fields, J. L., and Fields, G. B. (2002) Biol. Chem. 383, 1095-1105
43. Lauer-Fields, J. L., Sritharan, T., Stack, M. S., Nagase, H., and Fields, G. B. (2003) J. Biol. Chem. 278, 18140-18145
44. Minond, D., Lauer-Fields, J. L., Nagase, H., and Fields, G. B. (2004) Biochemistry 43, 11474-11481
45. Kay, L. E., Keifer, P., and Saarinen, T. (1992) J. Am. Chem. Soc. 114, 10663-10665
46. Messerle, B. A., Wider, G., Otting, G., Weber, C., and Wüthrich, K. (1989) J. Magn. Reson. 85, 608-613
47. Marion, D., Kay, L. E., Sparks, S. W., Torchia, D. A., and Bax, A. (1989) J. Am. Chem. Soc. 111, 1515-1517
48. Fesik, S. W., and Zuiderweg, E. R. (1988) J. Magn. Reson. 78, 588-593
49. Vuister, G. W., and Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777
50. Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T., Forman-Kay, J. D., and Kay, L. E. (1994) Biochemistry 33, 5984-6003
51. Palmer, A. G., 3rd. (1993) Curr. Opin. Biotechnol. 4, 385-391
52. Fan, P., Li, M. H., Brodsky, B., and Baum, J. (1993) Biochemistry 32, 13299-13309
53. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
54. Johnson, B. A., and Blevins, R. A. (1994) J. Biomol. NMR 4, 603-614
55. Glasoe, P. K., and Long, F. A. (1960) J. Phys. Chem. 64, 188-189
56. Bai, Y., Milne, J. S., Mayne, L., and Englander, S. W. (1993) Proteins 17, 75-86
57. Huyghues-Despointes, B. M., Pace, C. N., Englander, S. W., and Scholtz, J. M. (2001) Methods Mol. Biol. 168, 69-92
58. Englander, S. W., and Krishna, M. M. G. (2001) Nat. Struct. Biol.. 8, 741-742
59. Hvidt, A., and Nielsen, S. O. (1966) Adv. Protein Chem. 21, 287-386
60. Kramer, R. Z., Bella, J., Mayville, P., Brodsky, B., and Berman, H. M. (1999) Nat. Struct Biol 6, 454-457
61. Fields, G. B., and Van Wart, H. E. (1992) Matrix Suppl. 1, 68-70
62. Fiori, S., Saccà, B., and Moroder, L. (2002) J. Mol. Biol. 319, 1235-1242
63. Nerenberg, P. S., Salsas-Escat, R., and Stultz, C. M. (2008) Proteins 70, 1154-1161
64. Nagase, H., and Fields, G. B. (1996) Biopolymers 40, 399-416