Phylogenetic relationships among species of the genus Oligoryzomys (Rodentia, Cricetidae) from Central and South America

Zoologica Scripta

Volumn 39, Issue 6, 2010, Pages 511-526

  González Ittig, Raúl E ^a   Salazar Bravo, Jorge ^b   Barquez, Rubén M ^c   Gardenal, Cristina N ^a  

^a Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

^b TEXAS TECH UNIVERSITY   (United States)

^c UNIVERSIDAD NACIONAL DE TUCUMÁN   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

CRICETIDAE; HANTAVIRUS; OLIGORYZOMYS; OLIGORYZOMYS ANDINUS; OLIGORYZOMYS ARENALIS; OLIGORYZOMYS CHACOENSIS; OLIGORYZOMYS DESTRUCTOR; OLIGORYZOMYS FLAVESCENS; OLIGORYZOMYS FORNESI; OLIGORYZOMYS FULVESCENS; OLIGORYZOMYS GRISEOLUS; OLIGORYZOMYS LONGICAUDATUS; OLIGORYZOMYS MAGELLANICUS; OLIGORYZOMYS MICROTIS; OLIGORYZOMYS NIGRIPES; OLIGORYZOMYS STRAMINEUS; OLIGORYZOMYS VEGETUS; OLIGORYZOMYS VICTUS; ORYZOMYS; RODENTIA;

EID: 77958556954     PISSN: 03003256     EISSN: 14636409     Source Type: Journal    
DOI: 10.1111/j.1463-6409.2010.00446.x     Document Type: Article

References (77)

1. Anderson, S. & Yates, T. L. (2000). A new genus and species of phyllotine rodent from Bolivia. Journal of Mammalogy, 81, 18-36.
2. Andrades-Miranda, J., Oliveira, L. F. B., Lima-Rosa, A. V., Nunes, A. P., Zanchin, N. I. T. & Mattevi, M. S. (2001). Chromosome studies of seven species of Oligoryzomys (Rodentia: Sigmodnotinae) from Brazil. Journal of Mammalogy, 82, 1080-1091.
3. Aniskin, V. M. & Volobouev, V. T. (1999). Comparative chromosome banding of two South-American species of rice rats of the genus Oligoryzomys (Rodentia, Sigmodontinae). Chromosome Research, 7, 557-562.
4. Bangs, O. (1900). List of the mammals collected in the Santa Marta region of Colombia by W W. Brown Jr (Ed.). Proceedings of the New England Zoological Club, 1, 87-102.
5. Bensasson, D., Zhang, D. X., Hartl, D. L. & Hewitt, G. M. (2001). Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends in Ecology and Evolution, 16, 314-321.
6. Bharadwaj, M., Botten, J., Torrez-Martinez, N. & Hjelle, B. (1997). Rio Mamore virus: genetic characterization of a newly recognized hantavirus of the pygmy rice rat, Oligoryzomys microtis, from Bolivia. American Journal of Tropical Medicine and Hygiene, 57, 368-374.
7. Bonvicino, C. R. & Weksler, M. (1998). A new species of Oligoryzomys (Rodentia, Sigmodontinae) from northeastern and central Brazil. Zeistchrift für Säugetierkunde, 63, 90-103.
8. Brum-Zorrilla, N., Fronza, T. G., Wainberg, R., Vidal, L. & Zwirner, N. (1988). Oryzomys flavescens and O. delticola chromosomes (Rodentia, Cricetidae) from Uruguay and Argentina. Caryologia, 41, 275-288.
9. Capllonch, P., Autino, A. G., Díaz, M., Barquez, R. M. & Goytia, M. (1997). Los mamíferos del Parque Biológico Sierra de San Javier, Tucumán, Argentina: observaciones sobre su sistemática y distribución. Mastozoología Neotropical, 4, 49-71.
10. Carleton, M. D. & Musser, G. G. (1989). Systematic studies of Oryzomyine rodents (Muridae, Sigmodontinae): a synopsis of Microryzomys. Bulletin of the American Museum of Natural History, 191, 1-83.
11. Carleton, M. D. & Musser, G. G. (1995). Systematic studies of Oryzomyine rodents (Muridae Sigmodontinae): definition and distribution of Oligoryzomys vegetus (Bangs, 1902). Proceedings of the Biological Society of Washington, 108, 338-369.
12. Carroll, D. S., Mills, J. N., Montgomery, J. M., Bausch, D. G., Blair, P. J., Burans, J. P., Felices, V., Gianella, A., Iihoshi, N., Nichol, S. T., Olson, J. G., Rogers, D. S., Salazar, M. & Ksiazek, T. G. (2005). Hantavirus Pulmonary Syndrome in central Bolivia: relationships between reservoir hosts, habitats, and viral genotypes. American Journal of Tropical Medicine and Hygiene, 72, 42-46.
13. Contreras, J. R. & Berry, L. M. (1983). Notas acerca de los roedores del género Oligoryzomys de la Provincia del Chaco, República Argentina (Rodentia, Cricetidae). Historia Natural (Argentina), 3, 145-148.
14. Del Sal, G., Manfioletti, G. & Schneider, C. (1989). The CTAB DNA precipitation method: a common mini-scale preparation of template DNA from phagemids, phages or plasmids suitable for sequencing. BioTechniques, 7, 514-520.
15. Delfraro, A., Clara, M., Tomé, L., Achaval, F., Levis, S., Calderón, G., Enría, D., Lozano, M., Russi, J. & Arbiza, J. (2003). Yellow pigmy rice rat (Oligoryzomys flavescens) and Hantavirus Pulmonary Syndrome in Uruguay. Emerging Infectious Diseases, 9, 846-852.
16. Delfraro, A., Tomé, L., D'Elía, G., Clara, M., Achával, F., Russi, J. C. & Arbiza Rodonz, J. C. (2008). Juquitiba-like Hantavirus from 2 Nonrelated Rodent Species, Uruguay. Emerging Infectious Diseases, 14, 1447-1451.
17. Díaz, M. (2000). Key to the native mammals of Jujuy province, Argentina. Occasional Papers of the Oklahoma Museum of Natural History, 7, 1-29.
18. Díaz, M. M. & Barquez, R. M. (2007). The wild mammals of Jujuy Province, Argentina: systematics and distribution. In D. A. Kelt, E. P. Lessa, J. Salazar-Bravo & J. L. Patton (Eds) (pp. 417-578). The Quintessential Naturalist: Honoring the Life and Legacy of Oliver P. Pearson. University of California Publications in Zoology, 134, 1-981.
19. Díaz, M. M., Braum, J. K., Mares, M. A. & Barquez, R. M. (1997). Key to mammals of Salta province, Argentina. Occasional Papers of the Oklahoma Museum of Natural History, 2, 1-10.
20. Dickerman, A. & Yates, T. L. (1995). Systematics of Oligoryzomys: protein-electrophoretic analyzes. Journal of Mammalogy, 76, 172-188.
21. Engel, S. R., Hogan, K. M., Taylor, J. F. & Davis, S. K. (1998). Molecular systematics and paleobiogeography of the South American Sigmodontine rodents. Molecular Biology and Evolution, 15, 35-49.
22. Espinosa, M. B. & Reig, O. A. (1991). Cytogenetics and karyosystematics of South America Oryzomyine rodents (Cricetidae, Sigmodontinae) III Banding karyotypes of Argentinean Oligoryzomys. Zeistchrift für Säugetierkunde, 56, 306-317.
23. Francés, J. & D'Elía, G. (2006). Oligoryzomys delticola es sinónimo de O. nigripes (Rodentia, Cricetidae, Sigmodontinae). Mastozoología Neotropical, 13, 123-131.
24. Fulhorst, C. F., Cajimat, M. N. B., Utrera, A., Milazzo, M. L. & Duno, G. M. (2004). Maporal virus, a hantavirus associated with the fulvous pygmy rice rat (Oligoryzomys fulvescens) in western Venezuela. Virus Research, 104, 139-144.
25. Gardner, A. L. & Patton, J. L. (1976). Karyotypic variation in Oryzomyine rodents (Cricetinae) with comments on chromosomal evolution in the neotropical cricetine complex. Occasional Papers of the Museum of Zoology of the Louisiana State University, 49, 1-48.
26. Goloboff, P., Farris, S. & Nixon, K. (2008). TNT, a free program for phylogenetic analysis. Cladistics, 24, 1-13.
27. Gonzalez Della Valle, M., Edelstein, A., Miguel, S., Martinez, V. P., Cortez, J., Cacace, M. L., Jurgelenas, G., Sosa Estani, S. & Padula, P. (2002). Andes virus associated with Hantavirus Pulmonary Syndrome in northern Argentina and determination of the precise site of infection. American Journal of Tropical Medicine and Hygiene, 66, 713-720.
28. González-Ittig, R. E. & Gardenal, C. N. (2008). Co-amplification of mitochondrial pseudogenes in Calomys musculinus (Rodentia, Cricetidae): a source of error in phylogeographic studies. Genome, 51, 73-78.
29. Gonzalez-Ittig, R. E., Theiler, G. R. & Gardenal, C. N. (2002). A contribution to the subgeneric systematics of Oligoryzomys (Rodentia, Muridae) from Argentina by means of PCR-RFLP patterns of mitochondrial DNA. Biochemical Systematics and Ecology, 30, 23-33.
30. Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005). PHYML Online: a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Research, 33, 557-559.
31. Honacki, J. H., Kinman, K. E. & Koeppl, J. W. (Eds) (1982). Mammal Species of the World: A Taxonomic and Geographic Reference. Lawrence, KS: Allen Press Inc and The Association of Systematics Collections.
32. Katoh, K. & Toh, H. (2008). Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9, 286-298.
33. Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066.
34. Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
35. Levis, S., Morzunov, S. P., Rowe, J. E., Enría, D., Pini, N., Calderón, G., Sabattini, M. & St. Jeor, S. C. (1998). Genetic diversity and epidemiology of hantaviruses in Argentina. Journal of Infectious Disease, 177, 529-538.
36. Lima, J. F. S., Bonvicino, C. R. & Kasahara, S. (2003). A new karyotype of Oligoryzomys (Sigmodontinae, Rodentia) from central Brazil. Hereditas, 139, 1-6.
37. MacPhee, R. D. E. & Fleming, C. (1999). Requiem Aeternam. The last five hundred years of mammalian species extinctions. In R. D. E. MacPhee (Ed.) Extinctions in Near Time (pp. 333-371). New York: Kluwer Academic/Plenum Publisher.
38. Massoia, E. (1973). Descripción de Oryzomys fornesi, nueva especie y nuevos datos sobre algunas especies y subespecies argentinas del subgénero Oryzomys (Oligroyzomys) (Mammalia-Rodentia-Cricetidae). Revista de Investigaciones Agropecuarias INTA Serie I Biología y Producción Animal, 10, 21-37.
39. Miranda, G. B., Oliveira, L. F. B., Andrades-Miranda, J., Langguth, A., Callegari-Jacques, S. M. & Mattevi, M. S. (2009). Phylogenetic and phylogeographic patterns in Sigmodontine rodents of the genus Oligoryzomys. Journal of Heredity, 100, 309-321.
40. Musser, G.G. & Carleton, M.D. (2005). Superfamily Muroidea. In D.E. Wilson & D.M. Reeder (Eds) Mammal Species of the World, 3rd edn (pp. 894-1531). Baltimore, MD: John Hopkins University Press.
41. Myers, P. & Carleton, M. D. (1981). The species of Oryzomys (Oligoryzomys) in Paraguay and the identity of Azara's 'Rat sixiéme ou Rat á Tarse Noir'. Miscellaneous Publications of the Museum of Zoology of the University of Michigan, 161, 1-41.
42. Myers, P., Lundrigan, B. & Tucker, P. K. (1995). Molecular phylogenetics of Oryzomyine rodents: the genus Oligoryzomys. Molecular Phylogenetics and Evolution, 4, 373-382.
43. Olds, N. & Anderson, S. (1987). Notes on Bolivian mammals 2. Taxonomy and distribution of rice rats of the genus Oligoryzomys. In B. D. Patterson & R. M. Timm (Eds) Studies in Neotropical Mammalogy: Essays in Honor of Philip Hershkovitz. Fieldiana Zoology, New Series, Chicago, 39, 261-281.
44. Osgood, W. H. (1912). Mammals from western Venezuela and eastern Colombia. Field Museum of Natural History, Zoological Series, 10, 32-67.
45. Osgood, W. H. (1914). Mammals of an expedition across northern Perú. Field Museum of Natural History, Zoological Series, 12, 143-185.
46. Pacheco, V. (2002). Mamíferos del Perú. In G. Ceballos & J. A. Simonetti (Eds) Diversidad y Conservación de los Mamíferos Neotropicales (pp. 503-549). México: Instituto de Ecología de la Universidad Nacional Autónoma de México.
47. Padula, P., Colavecchia, S. B., Martínez, V., Gonzalez Della Valle, M., Edelstein, A., Miguel, S., Russi, J., Mora-Riquelme, J., Colucci, N., Almirón, M. & Rabinovich, R. D. (2000). Genetic diversity, distribution, and serological features of hantavirus infection in five countries in South America. Journal of Clinical Microbiology, 38, 3029-3035.
48. Padula, P., González Della Valle, M., García Alai, M., Cortada, P., Villagra, M. & Gianella, A. (2002). Andes virus and first case report of Bermejo virus causing fatal pulmonary syndrome. Emerging Infectious Disease, 8, 437-439.
49. Padula, P., Figueroa, R., Navarrete, M., Pizarro, E., Cadiz, R., Bellomo, C., Jofre, C., Zaror, L., Rodriguez, E. & Murúa, R. (2004). Transmission study of Andes hantavirus infection in wild sigmodontine rodents. Journal of Virology, 78, 11972-11979.
50. Padula, P., Martinez, V. P., Bellomo, C., Maidana, S., San Juan, J., Tagliaferri, P., Bargardi, S., Vazquez, C., Colucci, N., Estévez, J. & Almiron, M. (2007). Pathogenic hantaviruses, northeastern Argentina and eastern Paraguay. Emerging Infectious Disease, 13, 1211-1214.
51. Palma, R. E., Rivera-Milla, E., Salazar-Bravo, J., Torres-Pérez, F., Pardiñas, U. F. J., Marquet, P. A., Spotorno, A. E., Meynard, A. P. & Yates, T. L. (2005). Phylogeography of Oligoryzomys longicaudatus (Rodentia: Sigmodontinae) in temperate south America. Journal of Mammalogy, 86, 191-200.
52. Pardiñas, U. F. J. & Galliari, C. A. (1998). Comentario sobre el trabajo Los mamíferos del Parque Biológico Sierra de San Javier, Tucumán, Argentina: observaciones sobre su sistemática y distribución. Mastozoología Neotropical, 5, 61-63.
53. Paresque, R., De Jesus Silva, M. J., Yonenaga-Yassuda, Y. & Fagundes, V. (2007). Karyological geographic variation of Oligoryzomys nigripes Olfers, 1818 (Rodentia, Cricetidae) from Brazil. Genetics and Molecular Biology, 30, 43-53.
54. Patton, J. L. & Da Silva, M. N. F. (1995). A review of the spiny mouse genus Scolomys (Rodentia: Muridae: Sigmodontinae) with the description of a new species from the western Amazon of Brazil. Proceedings of the Biological Society of Washington, 108, 319-337.
55. Posada, D. & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
56. Powers, A. M., Mercer, D., Watts, D. M., Guzman, H., Fulhorst, C. F., Popov, V. L. & Tesh, R. B. (1999). Isolation and genetic characterization of a hantavirus (Bunyaviridae: Hantavirus) from a rodent Oligoryzomys microtis (Muridae), collected in northeastern Perú. The American Journal of Tropical Medicine and Hygiene, 61, 92-98.
57. Ray, C. E. (1962). The Oryzomyine Rodents of the Antillean Subregion. Doctor of Philosophy thesis, Cambridge, Massa-chusetts: Harvard University, pp. 1-211.
58. Reig, O. A. (1984). Distribuiçao geografica e historia evolutiva dos roedores muroideos sulamericanos (Cricetidae: Sigmodon-tinae). Revista Brasileira de Genética, 7, 333-365.
59. Reig, O. A.(1986).Diversity patterns and differentiation of high Andean rodents. In F. Vuilleumier & M. Monasterio (Eds) High Altitude Tropical Biogeography (pp. 404-440). New York: Oxford University Press
60. Rinehart, T. A., Grahn, R. A. & Wichman, H. A. (2005). SINE extinction preceded LINE extinction in Sigmodontine rodents: implications for retrotranspositional dynamics and mechanisms. Cytogenetics Genome Research, 110, 416-425.
61. Rivera, P. C., González-Ittig, R. E., Rossi Fraire, H. J., Levis, S. & Gardenal, C. N. (2007). Molecular identification of species of the genus Oligoryzomys, putative reservoirs of hantaviruses and phylogenetic relationships among the species present in Argentina. Zoologica Scripta, 36, 231-239.
62. Ronquist, F. & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
63. Saccone, C., Pesole, G. & Sbisà, E. (1991). The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. Journal of Molecular Evolution, 33, 83-91.
64. Sbalqueiro, I. J., Mattevi, M. S., Oliveira, L. F. & Solano, M. J. V. (1991). B chromosome system in populations of Oryzomys flavescens (Rodentia, Cricetidae) from southern Brazil. Acta Theriologica, 36, 193-199.
65. Sbisà, E., Tanzariello, R., Reyes, A., Resole, G. & Saccone, C. (1997). Mammalian mitochondrial control region structural analysis: identification of new conserved sequences and their evolutionary implications. Gene, 205, 125-140.
66. Schmaljohn, C. S., Hasty, S. E., Dalrymple, J. M., LeDuc, J. W., Lee, H. W., Von Bonsdorff, C. H., Brummer-Korvenkontio, M., Vaheri, A., Tsai, T. F., Regnery, H. L., Doldgaber, D. & Lee, P. W. (1985). Antigenic and genetic properties of viruses linked to hemorrhagic fever with renal syndrome into a newly defined genus of Bunyaviridae. Science, 227, 1041-1044.
67. Silva, M. J. & Yonenaga-Yassuda, Y. (1997). New karyotype of two related species of Oligoryzomys genus (Cricetidae, Rodentia) involving centric fusion with loss of NORs and distribution of telomeric (TTAGGG) n sequences. Hereditas, 127, 217-229.
68. Smith, M. F. & Patton, J. L. (1993). The diversification of South American murid rodents: evidence from mitochondrial DNA sequence data for the akodontine tribe. Biological Journal of the Linnean Society, 50, 149-177.
69. Smith, M. F. & Patton, J. L. (1999). Phylogenetic relationships and the radiation of sigmodontine rodents in South America: evidence from cytochrome b. Journal of Mammalogian Evolution, 6, 89-128.
70. Steppan, S. J., Adkins, R. M. & Anderson, J. (2004). Phylogeny and divergence date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. Systematic Biology, 53, 533-553.
71. Suzuki, A., Bisordi, I., Levis, S., Garcia, J., Pereira, L. E., Souza, R. P., Sugahara, T. K., Pini, N., Enria, D. & Souza, L. T. M. (2004). Identifying rodent hantavirus reservoirs, Brazil. Emerging Infectious Disease, 10, 2127-2134.
72. Swofford, D. L. (1998). PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. [Computer software and manual]. Sunderland, MA: Sinauer Associates.
73. Thomas, O. (1898). On indigenous Muridae in the West Indies; with the description of a new Mexican Oryzomys. Annals and Magazine of Natural History, Series, 7(1), 176-180.
74. Vincent, M. J., Quiroz, E., Gracia, F., Sanchez, A. J., Ksiazek, T. G., Kitsutani, P. T., Ruedas, L. A., Tinnin, D. S., Caceres, L., Garcia, A., Rollin, P. E., Mills, J. N., Peters, C. J. & Nichol, S.T. (2000). Hantavirus pulmonary syndrome in Panamá: identification of novel hantaviruses and their likely reservoirs. Virology, 277, 9-14.
75. Weksler, M. (2003). Phylogeny of neotropical Oryzomyine rodents (Muridae: Sigmodontinae) based on the nuclear IRBP exon. Molecular Phylogenetics and Evolution, 29, 331-349.
76. Weksler, M. (2006). Phylogenetic relationships of Oryzomine rodents (Muroidea: Sigmodontinae): separate and combined analyses of morphological and molecular data. Bulletin of the American Museum of Natural History, 296, 1-149.
77. Weksler, M. & Bonvicino, C.R. (2005). Taxonomy of pigmy rice rats genus Oligoryzomys Bangs, 1900 (Rodentia, Sigmodontinae) of the Brazilian Cerrado with the description of two new species. Arquivos do Museu Nacional, Rio de Janeiro, 63, 113-130.