Molecular identification and phylogenetic relationships among the species of the genus Oligoryzomys (Rodentia, Cricetidae) present in Argentina, putative reservoirs of hantaviruses

Zoologica Scripta

Volumn 36, Issue 3, 2007, Pages 231-239

  Rivera, Paula C ^a   Ittig, Raúl E González ^a   Fraire, Hernán J Rossi ^a   Levis, Silvana ^b   Gardenal, Cristina N ^a  

^a UNIVERSIDAD NACIONAL DE CÓRDOBA   (Argentina)

^b Instituto Nacional de Enfermedades Virales Humanas Dr Julio I Maiztegui   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

CRICETIDAE; HANTAVIRUS; OLIGORYZOMYS; OLIGORYZOMYS CHACOENSIS; OLIGORYZOMYS DELTICOLA; OLIGORYZOMYS FLAVESCENS; OLIGORYZOMYS LONGICAUDATUS; OLIGORYZOMYS NIGRIPES; ORYZOMYS; RODENTIA;

EID: 34147189694     PISSN: 03003256     EISSN: 14636409     Source Type: Journal    
DOI: 10.1111/j.1463-6409.2007.00273.x     Document Type: Article

References (48)

1. Andrades-Miranda, J., Oliveira, L. F. B., Lima-Rosa, C. A. V., Nunes, A. P., Zanchin, N. I. T. & Mattevi, M. S. (2001). Chromosome studies of seven species of Oligoryzomys (Rodentia: Sigmodontinae) from Brazil. Journal of Mammalogy, 82, 1080-1091.
2. Bangs, O. (1900). List of the mammals collected in the Santa Marta region of Colombia by W. W. Brown Jr. Proceedings of the New England Zoological Club, 1, 87-102.
3. Bharadwaj, M., Botten, J., Torrez-Martinez, N. & Hjelle, B. (1997). Rio Mamore virus: genetic characterization of a newly recognized hantavirus of the pygmy rice rat, Oligoryzomys microtis, from Bolivia. American Journal of Tropical Medicine and Hygiene, 57, 368-374.
4. Bohlman, M. C., Morzunov, S. P., Meissner, J., Taylor, M. B., Ishibashi, K., Rowe, J., Levis, S., Enria, D. & St Jeor, S. C. (2002). Analysis of hantavirus genetic diversity in Argentina: S segment-derived phylogeny. Journal of Virology, 76, 3765-3773.
5. Bonvicino, C. R. & Weksler, M. (1998). A new species of Oligoryzomys (Rodentia, Sigmodontinae) from Northeastern and Central Brazil. Zeistchrift für Säugetierkunde, 63, 90-103.
6. Calderón, G., Pini, N., Bolpe, J., Levis, S., Mills, J., Segura, E., Guthmann, N., Cantoni, G., Becker, J., Fonollat, A., Ripio, C., Bortman, M., Benedetti, R., Sabattini, M. & Enria, D. (1999). Hantavirus reservoir hosts associated with peridomestic habitats in Argentina. Emerging Infectious Diseases, 5, 792-797.
7. Capllonch, P., Autino, A. G., Díaz, M., Barquez, R. M. & Goytia, M. (1997). Los mamíferos del Parque Biológico Sierra de San Javier, Tucumán, Argentina: observaciones sobre su sistemática y distribución. Mastozoología Neotropical, 4, 49-71.
8. Carleton, M. D. & Musser, G. G. (1989). Systematic studies of Oryzomyine rodents (Muridae, Sigmodontinae): a synopsis of Microryzomys. Bulletin of the American Museum of Natural History, 191, 1-83.
9. Coyne, J. A. & Orr, H. A. (2004). Speciation. Sunderland, Massachusetts: Sinauer.
10. Delfraro, A., Clara, M., Tomé, L., Achaval, F., Levis, S., Calderón, G., Enría, D., Lozano, M., Russi, J. & Arbiza, J. (2003). Yellow pigmy rice rat (Oligoryzomys flavescens) and Hantavirus Pulmonary Syndrome in Uruguay. Emerging Infectious Diseases, 9, 846-852.
11. Díaz, M. (2000). Key to the native mammals of Jujuy province, Argentina. Occasional Papers of the Oklahoma Museum of Natural History, 7, 1-29.
12. Díaz, M. M., Braum, J. K., Mares, M. A. & Barquez, R. M. (1997). Key to mammals of Salta province, Argentina. Occasional Papers of the Oklahoma Museum of Natural History, 2, 1-10.
13. Dickerman, A. W. & Yates, T. L. (1995). Systematics of Oligoryzomys: protein-electrophoretic analyzes. Journal of Mammalogy, 76, 172-188.
14. Dowling, T. E., Moritz, C., Palmer, D. J. & Rieseberg, L. H. (1996). Nucleic acids III: analysis of fragments and restriction sites. In M. Hillis & C. Moritz & B. Mable (Eds) Molecular Systematics (pp. 249-320) 2nd ed., Sunderland, Massachusetts: Sinauer Associates.
15. Engel, S. R., Hogan, K. M., Taylor, J. F. & Davis, S. K. (1998). Molecular systematics and paleobiogeography of the South American Sigmodontine rodents. Molecular Biology and Evolution, 15, 35-49.
16. Espinosa, M. B. & Reig, O. A. (1991). Cytogenetics and karyosystematics of South American Oryzomyine rodents (Cricetidae, Sigmodontinae) III. Banding karyotypes of Argentinian. Oligoryzomys. Zeistchrift für Säugetierkunde, 56, 306-317.
17. Fabbri, M. & Maslow, M. J. (2001). Hantavirus Pulmonary Syndrome in the United States. Current Infectious Disease Report, 3, 258-265.
18. Gonzalez Della Valle, M., Edelstein, A., Miguel, S., Martinez, V., Cortez, J., Cacace, M. L., Jurgelenas, G., Sosa Estani, S. & Padula, P. (2002). Andes virus associated with Hantavirus Pulmonary Syndrome in northern Argentina and determination of the precise site of infection. American Journal of Medicine and Hygiene, 66, 713-720.
19. Gonzalez Ittig, R. E., Theiler, G. R. & Gardenal, C. N. (2002). A contribution to the subgeneric systematics of Oligoryzomys (Rodentia, Muridae) from Argentina by means of PCR-RFLP patterns of mitochondrial DNA. Biochemistry Systematic Ecology, 30, 23-33.
20. Hershkovitz, P. (1966). Mice, land bridges and Latin American faunal interchange. In R. L. Wenzel & V. J. Tipton (Eds) Ectoparasites of Panama (pp. 725-751). Chicago: Field Museum of Natural History.
21. Honacki, J. H., Kinman, K. E. & Koeppl, J. W. (1982). Mammal Species of the World: A Taxonomic and Geographyraphic Reference. Kansas: Allen Press Inc and The Association of Systematics Collections.
22. Levis, S., Morzunov, S. P., Rowe, J. E., Enría, D., Pini, N., Calderón, G., Sabattini, M. & St. Jeor, S. C. (1998). Genetic diversity and epidemiology of hantaviruses in Argentina. Journal of Infectious Diseases, 177, 529-538.
23. López, N., Padula, P., Rossi, C., Lázaro, M. E. & Franze-Fernández, M. T. (1996). Genetic identification of a new hantavirus causing severe pulmonary syndrome in Argentina. Virology, 220, 223-226.
24. McElroy, D., Moran, P., Bermingham, E. & Kornfield, I. (1992). REAP: an integrated environment for the manipulation of phylogenetic analysis of restriction data. Journal of Heredity, 83, 157-158.
25. Milligan, B. G. (1992). Plant DNA isolation. In A. R. Hoetzel (Ed.) Molecular Genetic Analysis of Populations, A Practical Approach (pp. 59-88). New York: IRL Press.
26. Mills, J. N. & Childs, J. E. (1998). Ecologic studies of rodent reservoirs: their relevance for human health. Emerging Infectious Diseases, 4, 529-537.
27. Myers, P., Lundrigan, B. & Tucker, P. K. (1995). Molecular phylogenetics of Oryzomyine rodents: the genus Oligoryzomys. Molecular Phylogenetic and Evolution, 4, 373-382.
28. Nei, M. & Li, W. H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Science of USA, 76, 5269-5273.
29. Olds, N. & Anderson, S. (1987). Notes on Bolivian mammals. 2. Taxonomy and distribution of rice rats of the subgenus Oligoryzomys. Fieldiana Zoology, 39, 261-281.
30. Ortiz, P. E. & Pardiñas, U. F. J. (2001). Sigmodontinos (Mammalia: Rodentia) del Pleistoceno tardío del valle de Tafí (Tucumán, Argentina): taxonomía, tafonomía y reconstrucción paleoambiental. Ameghiniana, 38, 3-26.
31. Padula, P., Figueroa, R., Navarrete, M., Pizarro, E., Cadiz, R., Bellomo, C., Jofre, C., Zaror, L., Rodriguez, E. & Murúa, R. (2004). Transmission study of Andes hantavirus infection in wild sigmodontine rodents. Journal of Virology, 78, 11972-11979.
32. Padula, P. J., Colavecchia, S. B., Martínez, V. P., Gonzalez Della Valle, M. O., Edelstein, A., Miguel, S. D. L., Russi, J., Mora- Riquelme, J., Colucci, N., Almirón, M. & Rabinovich, R. D. (2000). Genetic diversity, distribution, and serological features of hantavirus infection in five countries in South America. Journal of Clinical Microbiology, 38, 3029-3035.
33. Pardiñas, U. F. J. & Galliari, C. A. (1998). Comentario sobre el trabajo Los mamíferos del Parque Biológico Sierra de San Javier, Tucumán, Argentina: observaciones sobre su sistemática y distribución. Mastozoología Neotropical, 5, 61-63.
34. Patton, J. L., Silva, M. N. F. & Malcom, J. R. (1996). Hierarchical genetic structure and gene flow in three sympatric species of Amazonian rodents. Molecular Ecology, 5, 229-238.
35. Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
36. Redford, K. H. & Eisenberg, J. F. (1984). Mammals of the Neotropics. The Southern Cone, Vol. 1. Chicago: University of Chicago Press.
37. Reig, O. A. (1984). Distribuiçao geografica e historia evolutiva dos roedores muroideos sulamericanos (Cricetidae: Sigmodontinae). Revista Brasilera Genetica, 7, 333-365.
38. Reig, O. A. (1986). Diversity patterns and differentiation of high Andean rodents. In F. Vuilleumier & M. Monasterio (Eds) High Altitude Tropical Biogeography (pp. 404-440). New York: Oxford University Press.
39. Saccone, C., Pesole, G. & Sbisà, E. (1991). The main regulatory region of mammalian mitochondrial DNA: structure-function model and evolutionary pattern. Journal of Molecular Evolution, 33, 83-91.
40. Sbisà, E., Tanzariello, R., Reyes, A., Resole, G. & Saccone, C. (1997). Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their evolutionary implications. Gene, 205, 125-140.
41. Schmaljohn, C. S., Hasty, S. E., Dalrymple, J. M., LeDuc, J. W., Lee, H. W., von Bonsdorff, C. H., Brummer-Korvenkontio, M., Vaheri, A., Tsai, T. F., Regnery, H. L., Doldgaber, D. & Lee, P. W. (1985). Antigenic and genetic properties of viruses linked to hemorrhagic fever with renal syndrome into a newly defined genus of Bunyaviridae. Science, 227, 1041-1044.
42. Steppan, S. J. (1996). Sigmodontinae. Neotropical mice and rats. Tree of Life web project. Available via http://tolweb.org/ tree?group=Sigmodontinae.htm.
43. Suzuki, A., Bisordi, I., Levis, S., Garcia, J., Pereira, L. E., Souza, R. P., Sugahara, T. K. N., Pini, N., Enria, D. & Souza, L. T. M. (2004). Identifying rodent hantavirus reservoirs, Brazil. Emerging Infectious Diseases, 10, 2127-2134.
44. Swofford, D. L. (1998). PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.
45. Tate, G. H. H. (1932). The taxonomic history of the South and Central American cricetid rodents of the genus Oryzomys. Part 2: subgenera Oligoryzomys, Thallomyscus, and Melanomys. American Museum Novitiates, 580, 1-16.
46. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
47. Vasconcelos, M. J., Lima, V. P., Iversson, L. B., Rosa, M. D. B., Travassos da Rosa, A. P. A., Travassos da Rosa, E. S., Pereira, L. E., Nassar, E., Katz, G., Matida, L. H., Zaparoli, M. A., Ferreira, J. J. & Peters, C. J. (1997). Hantavirus Pulmonary Syndrome in the rural area of Juquitiba, São Paulo, Metropolitan Area, Brasil. Revista Do Instituto de Medicina Tropical de São Paulo, 39, 237-238.
48. Wilson, D. E. & Reeder, D. A. M. (2005). Mammal Species of the World. A taxonomic and Geographic Reference, 3rd, ed. Baltimore: The Johns Hopkins University Press.