Variance in the reproductive success of flat oyster Ostrea edulis L. Assessed by parentage analyses in natural and experimental conditions

Genetics Research

Volumn 92, Issue 3, 2010, Pages 175-187

  Lallias, D ^a,c   Taris, N ^a,d   Boudry, P ^a   Bonhomme, F ^b   Lapegue S ^a  

^a IFREMER   (France)

^b INSTITUT DES SCIENCES DE L EVOLUTION   (France)

^c BANGOR UNIVERSITY   (United Kingdom)

^d STATION BIOLOGIQUE DE ROSCOFF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; FEMALE; FRANCE; GENE LOCUS; GENETIC DIFFERENCE; GENOTYPE; LARVA; MALE; NONHUMAN; OYSTER; PARENTAGE ANALYSIS; PATERNITY; POPULATION SIZE; PROGENY; REPRODUCTIVE SUCCESS;

ANIMALS; FEMALE; FRANCE; GENETIC VARIATION; LARVA; MALE; MICROSATELLITE REPEATS; OSTREA; PEDIGREE; REPRODUCTION;

OSTREA EDULIS; OSTREIDAE;

EID: 77958474280     PISSN: 00166723     EISSN: 14695073     Source Type: Journal    
DOI: 10.1017/S0016672310000248     Document Type: Article

References (65)

1. Alvarez, G., Zapata, C., Amaro, R. & Guerra, A. (1989). Multilocus heterozygosity at protein loci and fitness in the European oyster, Ostrea edulis L. Heredity 63, 359-372.
2. Arnaud-Haond, S., Vonau, V., Rouxel, C., Bonhomme, F., Prou, J., Goyard, E. & Boudry, P. (2008). Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: beware of sampling strategy and genetic patchiness. Marine Biology 155, 147-157.
3. Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N. & Bonhomme, F. (1996-2001). GENETIX 4.02, logiciel sous Windows TM pour la genetique des populations. Montpellier, France: Laboratoire Genome, Populations, Interactions, CNRS UMR 5000, Universite de Montpellier II.
4. Bierne, N., Launey, S., Naciri-Graven, Y. & Bonhomme, F. (1998). Early effect of inbreeding as revealed by micro-satellite analyses on Ostrea edulis larvae. Genetics 148, 1893-1906.
5. Blonk, R. J. W., Komen, J., Kamstra, A., Crooijmans, R. P. M. A. & van Arendonk, J. A. M. (2009). Levels of inbreeding in group mating captive broodstock populations of Common sole (Solea solea), inferred from parental relatedness and contribution. Aquaculture 289, 26-31.
6. Byrne, R. J. & Avise, J. C. (2009). Multiple paternity and extra-group fertilizations in a natural population of California grunion (Leuresthes tenuis), a beach-spawning marine fish. Marine Biology 156, 1681-1690.
7. Boudry, P., Collet B., Cornette, F., Hervouet, V. & Bonhomme, F. (2002). High variance in reproductive success of the Pacific oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses. Aquaculture 204, 283-296.
8. Chakraborty, R., Meagher, T. R. & Smouse, P. E. (1988). Parentage analysis with genetic markers in natural populations. I. The expected proportion of offspring with unambiguous paternity. Genetics 118, 527-536.
9. Cornuet, J. M. & Luikart, G. (1996). Description and evaluation of two tests for detecting recent bottlenecks. Genetics 144, 2001-2014.
10. Culloty, S. C. & Mulcahy, M. F. (1992). An evaluation of anaesthetics for Ostrea edulis (L.). Aquaculture 107, 249-252.
11. Culloty, S. C. & Mulcahy, M. F. (1996). Season-, age-, and sex-related variation in the prevalence of bonamiasis in flat oysters (Ostrea edulis L.) on the south coast of Ireland. Aquaculture 144, 53-63.
12. David, P., Delay, B., Berthou, P. & Jarne, P. (1995). Alternative models for allozyme-associated heterosis in the marine bivalve Spisula ovalis. Genetics 139, 1719-1726.
13. David, P., Perdieu, M. A., Pernot, A. F. & Jarne, P. (1997). Fine-grained spatial and temporal population genetic structure in the marine bivalve Spisula ovalis. Evolution 51, 1318-1322.
14. Diaz-Almela, E., Boudry, P., Launey, S., Bonhomme, F. & Lapegue, S. (2004). Reduced female gene flow in the European flat oyster Ostrea edulis. Journal of Heredity 95, 510-516.
15. El Mousadik, A. & Petit, R. J. (1996). High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theoretical and Applied Genetics 92, 832-839.
16. Emery, A. M., Wilson, I. J., Craig, S., Boyle, P. R. & Noble, L. R. (2001). Assignment of paternity groups without access to parental genotypes: multiple mating and developmental plasticity in squid. Molecular Ecology 10, 1265-1278.
17. Food and Agriculture Organization of the United Nations (FAO) (2007). FishStat. Available at http://www.fao.org/ fi/statist/FISOFT/FISHPLUS.asp
18. Gaffney, P. M. (2006). The role of genetics in shellfish restoration. Aquatic Living Resources 19, 277-282.
19. Goudet, J. (1995). FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity 86, 485-486.
20. Goulletquer, P. & Heral, M. (1997). Marine molluscan production trends in France: from fisheries to aqua-culture. U. S. Department of Commerce, NOAA Technical Report NMFS 129, 137-164.
21. Hare, M. P., Allen, S. K., Bloomer, P., Camara, M. D., Carnegie, R. B., Murfree, J., Luckenbach, M., Meritt, D., Morrison, C., Paynter, K., Reece, K. S. & Rose, C. G. (2006). A genetic test for recruitment enhancement in Chesapeake Bay oysters, Crassostrea virginica, after population supplementation with disease tolerant strain. Conservation Genetics 7, 717-734.
22. Hedgecock, D. (1994). Does variance in reproductive success limit effective population sizes of marine organisms? In: Genetics and Evolution of Aquatic Organisms (ed. A. R. Beaumont), pp. 122-134. London: Chapman and Hall.
23. Hedgecock, D., Chow, V. & Waples, R. S. (1992). Effective population numbers of shellfish brood stocks estimated from temporal variances in allelic frequencies. Aqua-culture 108, 215-232.
24. b) inferred for a naturally spawned cohort of juvenile European flat oysters Ostrea edulis. Marine Biology 150, 1173-1182.
25. Hedgecock, D. & Sly, F. L. (1990). Genetic drift and effective population sizes of hatchery-propagated stocks of the Pacific oyster Crassostrea gigas. Aquaculture 88, 21-38.
26. Hedrick, P. W. (2000). Genetics of Populations, 2nd edn., 553 pp. Sudbury, MA: Jones and Bartlett Publishers.
27. Hedrick, P. W. (2005a). A standardized genetic differentiation measure. Evolution 59, 1633-1638.
28. e/N ratio. Evolution 59, 1596-1599.
29. Helm, M. M., Bourne, N. & Lovatelli, A. (2004). Hatchery Culture of Bivalves. A Practical Manual. FAO, Fisheries Technical Paper No. 471, 177 p. Rome: FAO.
30. Herlin, M., Delghandi, M., Wesmajervi, M., Taggart, J. B., McAndrew, B. J. & Penman, D. J. (2008). Analysis of the parental contribution to a group of fry from a single day of spawning from a commercial Atlantic cod (Gadus morhua) breeding tank. Aquaculture 274, 218-224.
31. Huvet, A., Boudry, P., Ohresser, M., Delsert, C. & Bonhomme, F. (2000). Variable microsatellites in the Pacific cupped oyster Crassostrea gigas and other cupped oyster species. Animal Genetics 3, 71-72.
32. Jeong, D-S., Gonzalez, E. B., Morishima, K., Arai, K. & Umino, T. (2007). Parentage assignment of stocked black sea bream Acanthopagrus schlegelii in Hiroshima Bay using microsatellite DNA markers. Fisheries Science 73, 823-830.
33. Johnson, M. S. & Black, R. (1984). Pattern beneath the chaos: the effect of recruitment on genetic patchiness in an intertidal limpet. Evolution 38, 1371-1383.
34. Jones, A. G. (2005). GERUD2.0: a computer program for the reconstruction of parental genotypes from progeny arrays with known or unknown parents. Molecular Ecology Notes 5, 708-711.
35. Jones, A. G. & Ardren, W. R. (2003). Methods of parentage analysis in natural populations. Molecular Ecology 12, 2511-2523.
36. Jones, A. G., Small, C. M., Paczolt, K. A. & Ratterman, N. L. (2010). A practical guide to methods for parentage analysis. Molecular Ecology Resources 10, 6-30.
37. Kalinowski, S. T., Taper, M. L. & Marshall, T. C. (2007). Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology 16, 1099-1106.
38. Laing, I., Walker, P. & Areal, F. (2005). 'A feasibility study of native oyster (Ostrea edulis) stock regeneration in the United Kingdom'. DEFRA-SEAFISH, Card Project FC1016: Native Oyster Stock Regeneration-A Review of Biological, Technical and Economic Feasibility. CEFAS, UK. 95 pp.
39. Lallias, D., Lapegue, S., Boudry, P., King, J. & Beaumont, A. R. (2010). Strategies for the retention of high genetic variability in European flat oyster (Ostrea edulis) restoration programmes. Conservation Genetics doi:10.1007/ s10592-010-0081-0.
40. Launey, S. (1998). Marqueurs microsatellites chez l'hutre plate Ostrea edulis L.: caracterisation et applications a un programme de selection pour une resistance au parasite Bonamia ostreae et a l'etude de populations naturelles. These de Doctorat, Institut National Agronomique Paris Grignon, France, 305 p.
41. Launey, S. & Hedgecock, D. (2001). High genetic load in the Pacific oyster Crassostrea gigas. Genetics 159, 255-265.
42. Launey, S., Ledu, C., Boudry, P., Bonhomme, F. & Naciri-Graven, Y. (2002). Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism. Journal of Heredity 93, 40-47.
43. Ledantec, X. & Marteil, L. (1976). La reproduction des hutres. Revue des Travaux de l'Institut des Pêches Marines 2, 233-256.
44. Li, G. & Hedgecock, D. (1998). Genetic heterogeneity, detected by PCR-SSCP, among samples of larval Pacific oysters (Crassostrea gigas) supports the hypothesis of large variance in reproductive success. Canadian Journal of Fisheries and Aquatic Sciences 55, 1025-1033.
45. Martin, A. G., Littaye-Mariette, A., Langlade, A. & Allenou, J. P. (1995). Cycle de reproduction naturelle de l'hutre plate Ostrea edulis. In Rapport de groupe de travail sur "La reproduction naturelle et controlee des bivalves cultives en France"-Ifremer Nantes 14-15 novembre 1995. DRV/RA/RST/97-11 Brest. Co-ordonnateurs: Devauchelle, Barret et Salaun. pp. 21-33.
46. Marshall, T. C., Slate, J., Kruuk, L. E. B. & Pemberton, J. M. (1998). Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology 7, 639-655.
47. Nei, M. (1978). Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89, 583-590.
48. Peel, D., Ovenden, J. R. & Peel, S. L. (2004). NeEstimator: Software for Estimating Effective Population Size, Version 1.2. Brisbane, Australia: Department of Primary Industries and Fisheries, Queensland Government.
49. Petersen, J. L., Ibarra, A. M., Ramirez, J. L. & May, B. (2008). An induced mass spawn of the hermaphroditic lion-paw scallop, Nodipecten subnodosus: genetic assignment of maternal and paternal parentage. Journal of Heredity 99, 337-348.
50. Rowe, S., Hutchings, J. A., Skjaeraasen, J. E. & Bezanson, L. (2008). Morphological and behavioural correlates of reproductive success in Atlantic cod Gadus morhua. Marine Ecology Progress Series 354, 257-265.
51. Saavedra, C., Zapata, C., Guerra, A. & Alvarez, G. (1987). Genetic structure of flat oyster (Ostrea edulis [Linneo, 1758]) from theNW of the Iberian Peninsula. Investigation Pesq 51, 225-241.
52. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. New York: Cold Spring Harbor Laboratory Press.
53. Sefc, K. M., Mattersdorfer, K., Sturmbauer, C. & Koblmuller, S. (2008). High frequency of multiple paternity in broods of a socially monogamous cichlid fish with biparental nest defence. Molecular Ecology 17, 2531-2543.
54. Taris, N., Baron, S., Sharbel, T. F., Sauvage, C. & Boudry, P. (2005). A combined microsatellite multiplexing and boiling DNA extraction method for high-throughput parentage analyses in the Pacific oyster (Crassostrea gigas). Aquaculture Research 36, 516-518.
55. Taris, N., Boudry, P., Bonhomme, F., Camara, M. D. & Lapegue, S. (2009). Mitochondrial and nuclear DNA analysis of genetic heterogeneity among recruitment cohorts of the European flat oyster Ostrea edulis. Biological Bulletin 217, 233-241.
56. Taris, N., Ernande, B., McCombie, H. & Boudry, P. (2006). Phenotypic and genetic consequences of size selection at the larval stage in the Pacific oyster (Crassostrea gigas). Journal of Experimental Marine Biology and Ecology 333, 147-158.
57. Tatarenkov, A., Healey, C. M. I., Grether, G. F. & Avise, J. C. (2008). Pronounced reproductive skew in a natural population of green swordtails, Xiphophorus helleri. Molecular Ecology 17, 4522-4534.
58. Waples, R. S. (1989). A generalized approach for estimating effective size from temporal changes in allele frequency. Genetics 121, 379-391.
59. Waples, R. S. & Do, C. (2008). LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources 8, 753-756.
60. Waples, R. S. & Do, C. (2010). Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evolutionary Applications 3, 244-262.
61. Weir, B. S. & Cockerham, C. C. (1984). Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370.
62. Wilkins, N. P. & Mathers, N. F. (1973). Enzyme polymorphisms in the European oyster, Ostrea edulis L. Animal Blood Groups and Biochemical Genetics 4, 41-47.
63. Wright, S. (1931). Evolution in Mendelian populations. Genetics 16, 97-159.
64. Williams, G. C. (1975). Sex and Evolution. Princeton. NJ: Princeton University Press.
65. Zouros, E. & Foltz, D. W. (1984). Possible explanations of heterozygote deficiency in bivalve Molluscs. Malacologia 25, 583-591.