A unified index of sequence quality and contig overlap for DNA barcoding

Bioinformatics

Volumn 26, Issue 21, 2010, Pages 2780-2781

  Little, Damon P ^a  

^a The New York Botanical Garden   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; BIOLOGY; CHEMISTRY; DNA SEQUENCE; FACTUAL DATABASE; METHODOLOGY; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT;

BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DNA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 77958451157     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq507     Document Type: Article

References (6)

1. CBOL Plant Working Group (2009) A DNA barcode for land plants. Proc. Natl Acad. Sci. USA, 106, 12794-12797.
2. Edgar,R.C. (2004)MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
3. Ewing,B. and Green,P. (1998) Base-calling of automated sequencer traces using Phred II: error probabilities. Genome Res., 8, 186-194.
4. Hanner,R. (2009) Proposed standards for BARCODE records in INSDC (BRIs). Technical report, Database Working Group, Consortium for the Barcode of Life, http://barcoding.si.edu/PDF/DWG_data_standards-Final.pdf.
5. Hebert,P.D.N. et al. (2003) Biological identications through DNA barcodes. Proc. R. Soc. Lond., B, 270, 313-321.
6. Scheffé,H. (1953) A method for judging all contrasts in the analysis of variance. Biometrika, 40, 87-104.