메뉴 건너뛰기




Volumn 77, Issue 5, 2010, Pages 1071-1082

Remarkably low mtDNA control-region diversity and shallow population structure in Pacific cod Gadus macrocephalus

Author keywords

Barriers to gene flow; Control region; Gadus macrocephalus; Genetic bottleneck; Genetic structure; Historical demography

Indexed keywords

MITOCHONDRIAL DNA;

EID: 77958188493     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2010.02743.x     Document Type: Article
Times cited : (20)

References (46)
  • 1
    • 0001104429 scopus 로고
    • Effects of salinity, temperature, and dissolved oxygen on the early development of Pacific cod (Gadus macrocephalus).
    • Alderdice, D. F. & Forrester, C. R. (1971). Effects of salinity, temperature, and dissolved oxygen on the early development of Pacific cod (Gadus macrocephalus). Journal of the Fisheries Research Board of Canada 28, 883-902.
    • (1971) Journal of the Fisheries Research Board of Canada , vol.28 , pp. 883-902
    • Alderdice, D.F.1    Forrester, C.R.2
  • 2
    • 0032558452 scopus 로고    scopus 로고
    • Speciation durations and Pleistocene effects on vertebrate phylogeography.
    • Avise, J. C., Walker, D. & Johns, G. C. (1998). Speciation durations and Pleistocene effects on vertebrate phylogeography. Proceedings of the Royal Society B 265, 1707-1712.
    • (1998) Proceedings of the Royal Society B , vol.265 , pp. 1707-1712
    • Avise, J.C.1    Walker, D.2    Johns, G.C.3
  • 4
    • 0033928911 scopus 로고    scopus 로고
    • Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA.
    • Bandelt, H. J., Macaulay, V. A. & Richards, M. B. (2000). Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. Molecular Phylogenetics and Evolution 16, 8-28.
    • (2000) Molecular Phylogenetics and Evolution , vol.16 , pp. 8-28
    • Bandelt, H.J.1    Macaulay, V.A.2    Richards, M.B.3
  • 5
    • 0024535552 scopus 로고
    • Organelle gene diversity under migration, mutation and drift: equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells and comparison to nuclear genes.
    • Birky, C. W., Fuerst, P. & Maruyama, T. (1989). Organelle gene diversity under migration, mutation and drift: equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells and comparison to nuclear genes. Genetics 121, 613-627.
    • (1989) Genetics , vol.121 , pp. 613-627
    • Birky, C.W.1    Fuerst, P.2    Maruyama, T.3
  • 6
    • 0036318165 scopus 로고    scopus 로고
    • IBD (isolation by distance): a program for analyses of isolation by distance.
    • Bohonak, A. J. (2002). IBD (isolation by distance): a program for analyses of isolation by distance. Journal of Heredity 93, 153-154.
    • (2002) Journal of Heredity , vol.93 , pp. 153-154
    • Bohonak, A.J.1
  • 7
    • 0036433712 scopus 로고    scopus 로고
    • Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes.
    • Bouza, C., Presa, P., Castro, J., Sánchez, L. & Martínez, P. (2002). Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes. Canadian Journal of Fisheries and Aquatic Sciences 59, 1460-1473.
    • (2002) Canadian Journal of Fisheries and Aquatic Sciences , vol.59 , pp. 1460-1473
    • Bouza, C.1    Presa, P.2    Castro, J.3    Sánchez, L.4    Martínez, P.5
  • 9
    • 0036438874 scopus 로고    scopus 로고
    • Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal.
    • Buonaccorsi, V. P., Kimbrell, C. A., Lynn, E. A. & Vetter, R. D. (2002). Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal. Canadian Journal of Fisheries and Aquatic Sciences 59, 1374-1384.
    • (2002) Canadian Journal of Fisheries and Aquatic Sciences , vol.59 , pp. 1374-1384
    • Buonaccorsi, V.P.1    Kimbrell, C.A.2    Lynn, E.A.3    Vetter, R.D.4
  • 10
    • 0033383374 scopus 로고    scopus 로고
    • Molecular systematics of gadid fishes: implications for the biogeographic origins of Pacific species.
    • Carr, S. M., Kivlichan, D. S., Pepin, P. & Crutcher, D. C. (1999). Molecular systematics of gadid fishes: implications for the biogeographic origins of Pacific species. Canadian Journal of Zoology 77, 19-26.
    • (1999) Canadian Journal of Zoology , vol.77 , pp. 19-26
    • Carr, S.M.1    Kivlichan, D.S.2    Pepin, P.3    Crutcher, D.C.4
  • 11
    • 33847034057 scopus 로고    scopus 로고
    • Mitochondrial genomics of gadine fish: implications for taxonomy and biogeographic origins from whole-genome data sets.
    • Coulson, M. W., Marshall, H. D., Pepin, P. & Carr, S. M. (2006). Mitochondrial genomics of gadine fish: implications for taxonomy and biogeographic origins from whole-genome data sets. Genome 49, 1115-1130.
    • (2006) Genome , vol.49 , pp. 1115-1130
    • Coulson, M.W.1    Marshall, H.D.2    Pepin, P.3    Carr, S.M.4
  • 12
    • 65349095660 scopus 로고    scopus 로고
    • Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northeastern Pacific Ocean.
    • Cunningham, K. M., Canino, M. F., Spies, I. B. & Hauser, L. (2009). Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northeastern Pacific Ocean. Canadian Journal of Fisheries and Aquatic Sciences 66, 153-166.
    • (2009) Canadian Journal of Fisheries and Aquatic Sciences , vol.66 , pp. 153-166
    • Cunningham, K.M.1    Canino, M.F.2    Spies, I.B.3    Hauser, L.4
  • 13
    • 36349013297 scopus 로고    scopus 로고
    • Trans-Arctic dispersals and the evolution of a circumpolar marine fish species complex, the capelin (Mallotus villosus).
    • Dodson, J. J., Tremblay, S., Colombani, F., Carscadden, J. E. & Lecomte, F. (2007). Trans-Arctic dispersals and the evolution of a circumpolar marine fish species complex, the capelin (Mallotus villosus). Molecular Ecology 16, 5030-5043.
    • (2007) Molecular Ecology , vol.16 , pp. 5030-5043
    • Dodson, J.J.1    Tremblay, S.2    Colombani, F.3    Carscadden, J.E.4    Lecomte, F.5
  • 14
    • 33747145109 scopus 로고    scopus 로고
    • Arlequin ver 3.1: An Integrated Software Package for Population Genetics Data Analysis
    • &, Bern: University of Bern.
    • Excoffier, L., Laval, G. & Schneider, S. (2006). Arlequin ver 3.1: An Integrated Software Package for Population Genetics Data Analysis. Bern: University of Bern.
    • (2006)
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 15
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.
    • Excoffier, L., Smouse, P. E. & Quattro, J. M. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 16
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap.
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 17
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection.
    • Fu, Y. X. (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147, 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 18
    • 77957240618 scopus 로고
    • Study of the management unit of fisheries resources by genetic method. 1. Genetic similarity of Pacific cod in the North Pacific.
    • Gong, Y., Park, Y. C. & Kim, S. S. (1991). Study of the management unit of fisheries resources by genetic method. 1. Genetic similarity of Pacific cod in the North Pacific. Bulletin of National Fisheries Research and Development Agency 45, 47-61.
    • (1991) Bulletin of National Fisheries Research and Development Agency , vol.45 , pp. 47-61
    • Gong, Y.1    Park, Y.C.2    Kim, S.S.3
  • 19
    • 0031690476 scopus 로고    scopus 로고
    • Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation.
    • Grant, W. S. & Bowen, B. W. (1998). Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. Journal of Heredity 89, 415-426.
    • (1998) Journal of Heredity , vol.89 , pp. 415-426
    • Grant, W.S.1    Bowen, B.W.2
  • 21
    • 0024231461 scopus 로고
    • Evolution of Atlantic and Pacific cod: loss of genetic variation and gene expression in Pacific cod.
    • Grant, W. S. & Ståhl, G. (1988). Evolution of Atlantic and Pacific cod: loss of genetic variation and gene expression in Pacific cod. Evolution 42, 138-146.
    • (1988) Evolution , vol.42 , pp. 138-146
    • Grant, W.S.1    Ståhl, G.2
  • 22
    • 49149088066 scopus 로고    scopus 로고
    • Deep phylogeographic break among white croaker Pennahia argentata (Sciaenidae, Perciformes) populations in North-western Pacific.
    • Han, Z. Q., Gao, T. X., Yanagimoto, T. & Sakurai, Y. (2008). Deep phylogeographic break among white croaker Pennahia argentata (Sciaenidae, Perciformes) populations in North-western Pacific. Fisheries Science 74, 770-780
    • (2008) Fisheries Science , vol.74 , pp. 770-780
    • Han, Z.Q.1    Gao, T.X.2    Yanagimoto, T.3    Sakurai, Y.4
  • 23
    • 0029860602 scopus 로고    scopus 로고
    • Some genetic consequences of ice ages and their role in divergence and speciation.
    • Hewitt, G. M. (1996). Some genetic consequences of ice ages and their role in divergence and speciation. Biological Journal of the Linnean Society 58, 247-276.
    • (1996) Biological Journal of the Linnean Society , vol.58 , pp. 247-276
    • Hewitt, G.M.1
  • 24
    • 70349632220 scopus 로고    scopus 로고
    • Population genetic structure in the redefined vermilion rockfish (Sebastes miniatus) indicates limited larval dispersal and reveals natural management units.
    • Hyde, J. R. & Vetter, R. D. (2009). Population genetic structure in the redefined vermilion rockfish (Sebastes miniatus) indicates limited larval dispersal and reveals natural management units. Canadian Journal of Fisheries and Aquatic Sciences 669, 1569-1581.
    • (2009) Canadian Journal of Fisheries and Aquatic Sciences , vol.669 , pp. 1569-1581
    • Hyde, J.R.1    Vetter, R.D.2
  • 26
    • 0345517622 scopus 로고
    • Biochemical analyses of genetic variability and divergence of populations in Pacific herring.
    • Kobayashi, T. (1993). Biochemical analyses of genetic variability and divergence of populations in Pacific herring. Bulletin of the National Research Institute of Far Seas Fisheries 30, 1-33.
    • (1993) Bulletin of the National Research Institute of Far Seas Fisheries , vol.30 , pp. 1-33
    • Kobayashi, T.1
  • 27
    • 0347356456 scopus 로고    scopus 로고
    • The relationship between microsatellite slippage mutation rate and the number of repeat units.
    • Lai, Y. & Sun, F. (2003). The relationship between microsatellite slippage mutation rate and the number of repeat units. Molecular Biology and Evolution 20, 2123-2131.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 2123-2131
    • Lai, Y.1    Sun, F.2
  • 28
    • 0036143289 scopus 로고    scopus 로고
    • Into and out of the last glacial maximum: sea-level change during oxygen isotope stages 3 and 2.
    • Lambeck, K., Yusuke, Y. & Tony, P. (2002). Into and out of the last glacial maximum: sea-level change during oxygen isotope stages 3 and 2. Quaternary Science Reviews 21, 343-360.
    • (2002) Quaternary Science Reviews , vol.21 , pp. 343-360
    • Lambeck, K.1    Yusuke, Y.2    Tony, P.3
  • 29
    • 33846084338 scopus 로고    scopus 로고
    • Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845).
    • Liu, J. X., Gao, T. X., Wu, S. F. & Zhang, Y. P. (2007). Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Molecular Ecology 16, 275-288.
    • (2007) Molecular Ecology , vol.16 , pp. 275-288
    • Liu, J.X.1    Gao, T.X.2    Wu, S.F.3    Zhang, Y.P.4
  • 30
    • 67949124639 scopus 로고    scopus 로고
    • Strong genetic differentiation of the austral hake (Merluccius australis) across the species range.
    • Machado-Schiaffino, G., Campo, D. & Garcia-Vazquez, E. (2009). Strong genetic differentiation of the austral hake (Merluccius australis) across the species range. Molecular Phylogenetics and Evolution 53, 351-356.
    • (2009) Molecular Phylogenetics and Evolution , vol.53 , pp. 351-356
    • Machado-Schiaffino, G.1    Campo, D.2    Garcia-Vazquez, E.3
  • 32
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution.
    • Posada, D. & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests.
    • Rice, W. R. (1989). Analyzing tables of statistical tests. Evolution 43, 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 34
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic divergences.
    • Rogers, A. R. & Harpending, H. (1992). Population growth makes waves in the distribution of pairwise genetic divergences. Molecular Biology and Evolution 9, 552-569.
    • (1992) Molecular Biology and Evolution , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 35
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance.
    • Rousset, F. (1997). Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145, 1219-1228.
    • (1997) Genetics , vol.145 , pp. 1219-1228
    • Rousset, F.1
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees.
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0004136246 scopus 로고
    • Molecular Cloning: A Laboratory Manual
    • &, 2nd edn., Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • Sambrook, J., Fristch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
    • (1989)
    • Sambrook, J.1    Fristch, E.F.2    Maniatis, T.3
  • 39
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise divergences when the mutation rates vary among sites: application to human mitochondrial DNA.
    • Schneider, S. & Excoffier, L. (1999). Estimation of past demographic parameters from the distribution of pairwise divergences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152, 1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 40
    • 0000392112 scopus 로고
    • Isolation by distance in equilibrium and non-equilibrium populations.
    • Slatkin, M. (1993). Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47, 264-279.
    • (1993) Evolution , vol.47 , pp. 264-279
    • Slatkin, M.1
  • 41
    • 0004248459 scopus 로고    scopus 로고
    • PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.
    • (). Sunderland, MA: Sinauer Associates.
    • Swofford, D. L. (2002). PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sunderland, MA: Sinauer Associates.
    • (2002)
    • Swofford, D.L.1
  • 42
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
    • Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 43
    • 77958165121 scopus 로고
    • Marine Fishery Biology
    • (). In (Deng, J. Y. &, Zhao, C. Y., eds) - Beijing: Agriculture Press.
    • Tang, Q. S. (1991). Herrings in Yellow Sea. In Marine Fishery Biology (Deng, J. Y. & Zhao, C. Y., eds), pp. 296-356. Beijing: Agriculture Press.
    • (1991) Herrings in Yellow Sea.
    • Tang, Q.S.1
  • 45
    • 0028137508 scopus 로고
    • A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes.
    • Ward, R. D., Woodwark, M. D. & Skibinski, O. F. (1994). A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. Journal of Fish Biology 44, 213-232.
    • (1994) Journal of Fish Biology , vol.44 , pp. 213-232
    • Ward, R.D.1    Woodwark, M.D.2    Skibinski, O.F.3
  • 46
    • 0035544546 scopus 로고    scopus 로고
    • Phylogeography and historical ecology of the North Atlantic intertidal.
    • Wares, J. P. & Cunningham, C. W. (2001). Phylogeography and historical ecology of the North Atlantic intertidal. Evolution 55, 2455-2469.
    • (2001) Evolution , vol.55 , pp. 2455-2469
    • Wares, J.P.1    Cunningham, C.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.