Application of an oligonucleotide microarray-based nano-amplification technique for the detection of fungal pathogens

Clinical Chemistry and Laboratory Medicine

Volumn 48, Issue 10, 2010, Pages 1507-1514

  Lu, Weiping ^a,b   Gu, Dayong ^c   Chen, Xingyun ^b   Xiong, Renping ^b   Liu, Ping ^b   Yang, Nan ^b   Zhou, Yuanguo ^b  

^a THIRD MILITARY MEDICAL UNIVERSITY   (China)

^b THIRD MILITARY MEDICAL UNIVERSITY   (China)

^c Shenzhen Entry Exit Inspection and Quarantine Bureau   (China)

Author keywords

fungus; identification; internal transcribed spacer; microarray; nano gold; rRNA

Indexed keywords

FUNGAL DNA; GOLD NANOPARTICLE; INTERNAL TRANSCRIBED SPACER; RIBOSOME DNA; SILVER;

ANALYTIC METHOD; ARTICLE; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA KRUSEI; CANDIDA PARAPSILOSIS; CLAVISPORA LUSITANIAE; CONTROLLED STUDY; CRYPTOCOCCUS NEOFORMANS; DNA MICROARRAY; FUNGAL DETECTION; FUNGAL STRAIN; FUNGUS CULTURE; FUNGUS IDENTIFICATION; GENE AMPLIFICATION; KLUYVEROMYCES MARXIANUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PICHIA GUILLIERMONDII; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RELIABILITY; SENSITIVITY AND SPECIFICITY;

DNA, FUNGAL; DNA, RIBOSOMAL; FUNGI; GOLD; HUMANS; METAL NANOPARTICLES; NANOTECHNOLOGY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OLIGONUCLEOTIDE PROBES; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SILVER;

CANDIDA; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA PARAPSILOSIS; CLAVISPORA LUSITANIAE; FILOBASIDIELLA NEOFORMANS; FUNGI; ISSATCHENKIA ORIENTALIS; PICHIA GUILLIERMONDII;

EID: 77958167776     PISSN: 14346621     EISSN: 14374331     Source Type: Journal    
DOI: 10.1515/CCLM.2010.284     Document Type: Article

References (27)

1. Groll AH, Shah PM, Mentzel C, Schneider M, Just-Nuebling G, Huebner K. Trends in the postmortem epidemiology of invasive fungal infections at a university hospital. J Infect 1996;33:23-32.
2. Giamarellou H, Antoniadou A. Epidemiology, diagnosis, and therapy of fungal infections in surgery. Infect Control Hosp Epidemiol 1996;17:558-64.
3. Nucci M, Spector N, Bueno A, Solza C, Perecmanis T, Bacha PC, et al. Risk factors and attributable mortality associated with superinfections in neutropenic patients with cancer. Clin Infect Dis 1997;24:575-9.
4. Hagen EA, Stern H, Porter D, Duffy K, Foley K, Luger S, et al. High rate of invasive fungal infections following nonmyeloablative allogeneic transplantation. Clin Infect Dis 2003;36:9-15.
5. Mitsutake K, Miyazaki T, Tashiro T, Yamamoto Y, Kakeya H, Otsubo T, et al. Enolase antigen, mannan antigen, Cand-Tec antigen and beta-glucan in patients with candidemia. J Clin Microbiol 1996;34:1918-21.
6. Chen SC, Halliday CL, Meyer W. A review of nucleic acidbased diagnosis tests for systemic mycoses with an emphasis on polymerase chain reaction-based assays. Med Mycol 2002;40:333-57.
7. Andrade SS, Bispo PJ, Gales AC. Advances in the microbiological diagnosis of sepsis. Shock 2008;30(Suppl 1):41-6.
8. Kanbe T, Arishima T, Horii T, Kikuchi A. Improvements of PCR-based identification targeting the DNA topoisomerase II gene to determine major species of the opportunistic fungi Candida and Aspergillus fumigatus. Microbiol Immunol 2003;47:631-8.
9. Vollmer T, Störmer M, Kleesiek K, Dreier J. Evaluation of novel broad-range real-time PCR assay for rapid detection of human pathogenic fungi in various clinical specimens. J Clin Microbiol 2008;46:1919-26.
10. Luo G, Mitchell TG. Rapid identification of pathogenic fungi directly from cultures by using multiplex PCR. J Clin Microbiol 2002;40:2860-5.
11. Esteve-Zarzoso B, Belloch C, Uruburu F, Querol A. Identification of yeast by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int J Syst Bacteriol 1999;49(pt 1):329-37.
12. Gillman LM, Gunton J, Turenne CY, Wolfe J, Kabani AM. Identification of Mycobacterium species by multiple-fluorescence PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene. J Clin Microbiol 2001;39:3085-91.
13. Kumar M, Shukla PK. Use of PCR targeting of internal transcribed spacer regions and single-stranded conformation polymorphism analysis of sequence variation in different regions of rRNA genes in fungi for rapid diagnosis of mycotic keratitis. J Clin Microbiol 2005;43:662-8.
14. Einsele H, Hebart H, Roller G, Löffler J, Rothenhofer I, Müller CA, et al. Detection and identification of fungal pathogens in blood by using molecular probes. J Clin Microbiol 1997;35:1353-60.
15. Elie CM, Lott TJ, Reiss E, Morrison CJ. Rapid identification of Candida species with species-specific probes. J Clin Microbiol 1998;36:3260-5.
16. Leinberger DM, Schumacher U, Autenrieth IB, Bachmann TT. Development of a DNA microarray for detection and of fungal pathogens involved in invasive mycoses. J Clin Microbiol 2005;44:4943-53.
17. Huang AH, Li JW, Shen ZQ, Wang XW, Jin M. High-throughput identification of clinical pathogenic fungi by hybridization to an oligonucleotide microarray. J Clin Microbiol 2006;44:3299-305.
18. Spiess B, Seifarth W, Hummel M, Frank O, Fabarius A, Zheng C, et al. DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients. J Clin Microbiol 2007;45:3743-53.
19. Löffler J, Hebart H, Schumacher U, Reitze H, Einsele H. Comparison of different methods for extraction of DNA of fungal pathogens from cultures and blood. J Clin Microbiol 1997;35:3311-2.
20. Lott TJ, Burns BM, Zancope-Oliveira R, Elie CM, Reiss E. Sequence analysis of the internal transcribed spacer 2 (ITS2) from yeast species within the genus Candida. Curr Microbiol 1998;36:63-9.
21. Henry T, Iwen PC, Hinrichs SH. Identification of Aspergillus species using internal transcribed spacer regions 1 and 2. J Clin Microbiol 2000;38:1510-5.
22. Ferrer C, Colom F, Frasés S, Mulet E, Abad JL, Alió JL. Detection and identification of fungal pathogens by PCR and by ITS2 and 5.8S ribosomal DNA typing in ocular infections. J Clin Microbiol 2001;39:2873-9.
23. Iwen PC, Hinrichs SH, Riuppi ME. Utilization of the internal transcribed spacer regions as molecular targets to detect and identify human fungal pathogens. Med Mycol 2002;40:87-109.
24. Taton TA, Mirkin CA, Letsinger RL. Scanometric DNA array detection with nanoparticle probes. Science 2000;289:1757-60.
25. Csáki A, Kaplannek P, Möller R, Fritzshe W. The optical detection of individual DNA-conjugated gold nanoparticle labels after metal enhancement. Nanotechnology 2003;14:1262-8.
26. James JS, Sudhakar DM, Paul B, Suan HH, Adam LV, Tim P, et al. Gold nanoparticle-based detection of genomic DNA targets on microarray using a novel optical detection system. Biosens Bioelectron 2004;19:875-83.
27. Wan ZX, Wang YF, Li SS, Duan LL, Zhai JX. Development of array-based technology for detection of HAV using gold-DNA probes. J Biochem Mol Biol 2005;38:399-406.