Seasonal Changes in Organic Matter Mineralization in a Sublittoral Sediment and Temperature-Driven Decoupling of Key Processes

Microbial Ecology

Volumn 60, Issue 3, 2010, Pages 551-560

  Tabuchi, Keiichi ^a   Kojima, Hisaya ^b   Fukui, Manabu ^a,b  

^a TOKYO METROPOLITAN UNIVERSITY   (Japan)

^b HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ORGANIC COMPOUND; SEA WATER; SULFATE;

ARTICLE; BACTERIUM; BIOREMEDIATION; CHEMISTRY; CLASSIFICATION; DENATURING GRADIENT GEL ELECTROPHORESIS; FERMENTATION; GENETICS; JAPAN; METABOLISM; MICROBIOLOGY; OXIDATION REDUCTION REACTION; PHYLOGENY; SEASON; SEDIMENT; TEMPERATURE;

BACTERIA; BIODEGRADATION, ENVIRONMENTAL; DENATURING GRADIENT GEL ELECTROPHORESIS; FERMENTATION; GEOLOGIC SEDIMENTS; JAPAN; ORGANIC CHEMICALS; OXIDATION-REDUCTION; PHYLOGENY; SEASONS; SEAWATER; SULFATES; TEMPERATURE;

BACTERIA (MICROORGANISMS);

EID: 77958060262     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9659-9     Document Type: Article

References (31)

1. Arnosti C, Segemann J, Jørgensen BB, Thamdrup B (1998) Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption and sulfate reduction. Mar Ecol Prog Ser 165: 59-70.
2. Belanger C, Brigitte-Destosiers KL (1997) Microbial extracellular enzyme activity in marine sediments: extreme pH to terminate reaction and sample storage. Aqua Microb Ecol 13: 187-196.
3. Berner RA (1978) Sulfate reduction and the rate of deposition of marine sediments. Earth Planet Sci Lett 37: 492-498.
4. Boschker HTS, Cappenberg TE (1994) A sensitive method using 4-methylumbelliferyl-D-cellobiose as a substrate to measure (1, 4)-β-glucanase activity in sediments. Appl Environ Microbiol 60: 3592-3596.
5. Canfield DE, Fossing H, Jørgensen BB, Glud R, Gundersen J, Ramsing NB, Thamdrup B, Hansen JW, Nielsen LP, Hall POJ (1993) Pathways of organic carbon oxidation in three continental margin sediments. Mar Geol 113: 27-40.
6. Cline JD (1969) Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14: 454-458.
7. Dean WE, Gorham E (2009) Magnitude and significance of carbon burial in lakes, reservoirs, and peatlands. Geology 26: 535-538.
8. Emerson S, Hedges JI (1988) Processes controlling the organic carbon content of open ocean sediments. Paleoceanography 3: 621-634.
9. Finke N, Vandieken V, Jørgensen BB (2007) Acetate, lactate, propionate, and isobutyrate as electron donors for iron and sulfate reduction in Arctic marine sediments, Svalbard. FEMS Microbiol Ecol 59: 10-22.
10. Fukui M, Takii S (1990) Seasonal variations of population density and activity of sulfate-reducing bacteria in offshore and reed sediments of a hypertrophic freshwater lake. Jpn J Limnol 51: 63-71.
11. Howes BL, Decay JWH, King GM (1984) Carbon flow through oxygen and sulfate reduction pathways in salt marsh sediments. Limonol Oceanogr 29: 1037-1051.
12. Jørgensen BB (1982) Mineralization of organic matter in the sea bed-the role of sulphate reduction. Nature 296: 643-645.
13. King GM (1986) Characterization of β-glucosidase activity in intertidal marine sediments. Appl Environ Microbiol 51: 373-380.
14. Knoblaugh C, Jørgensen BB, Harder J (1999) Community size and metabolic rates of psychrophilic sulfate-reducing bacteria in Arctic marine sediments. Appl Environ Microbiol 65: 4230-4233.
15. Koizumi Y, Kojima H, Fukui M (2003) Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments. FEMS Microbiol Ecol 46: 147-157.
16. Kostka JE, Thamdrup B, Gulg RN, Canfield DE (1999) Rates and pathways of carbon oxidation in permanently cold Arctic sediments. Mar Ecol Prog Ser 180: 7-21.
17. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150-163.
18. Liikanen A, Murtoniemi T, Tanskanen H, Vaisanen T, Martikainen PJ (2002) Effects of temperature and oxygen availability on greenhouse gas and nutrient dynamics in sediment of a eutrophic mid-boreal lake. Biogeochemistry 59: 269-286.
19. Meyer-Reil L-A (1986) Measurement of hydrolytic activity and incorporation of dissolved organic substrates by microorganisms in marine sediments. Mar Ecol Prog Ser 31: 143-149.
20. Muyzer G, De Waals EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified gene coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
21. Poremba K, Hoppe H-G (1995) Spatial variation of benthic microbial production and hydrolytic enzymatic activity down the continental slope of the Celtic Sea. Mar Ecol Prog Ser 118: 237-245.
22. Ravenschlag K, Sahm K, Knoublqugh C, Jørgensen BB, Amann R (2000) Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine Arctic sediments. Appl Environ Microbiol 66: 3592-3602.
23. Robador A, Brüchert V, Jørgensen BB (2009) The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environ Microbiol 11: 1692-1703.
24. Sahm K, Knoblaugh C, Amann R (1999) Phylogenic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine Arctic sediments. Appl Environ Microbiol 65: 3976-3981.
25. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
26. Ulrich GA, Krumholz LR, Suflita JM (1997) A rapid and simple method for estimating sulfate reduction activity and quantifying inorganic sulfides. Appl Environ Microbiol 63: 1627-1630.
27. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
28. Westrich JT, Berner RA (1988) The effect of temperature on rates of sulfate reduction in marine sediments. Geomicrobiol J 6: 99-117.
29. Weston NB, Joye SB (2005) Temperature-driven decoupling of key phases of organic matter degradation in marine sediments. Proc Natl Acad Sci USA 102: 17036-17040.
30. Widdel F, Bak F (1992) Gram-negative mesophilic sulfate-reducing bacteria. The prokaryotes, vol 4, 2nd edn. Springer-Verlag, New York, pp 3352-3378.
31. Wilson K (1990) Miniprep of bacterial genomic DNA. In: Ausubel EM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds), Short protocols in molecular biology, 2nd ed. John Wiley and Sons, New York, p 2. 4. 1-2.