메뉴 건너뛰기




Volumn 17, Issue 10, 2010, Pages 1253-1266

Re-evaluating the "rules" of protein topology

Author keywords

novel protein folds; protein fold space; protein topology

Indexed keywords

PROTEIN;

EID: 77958044573     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2009.0265     Document Type: Article
Times cited : (14)

References (24)
  • 1
    • 22244434225 scopus 로고    scopus 로고
    • DOM-fold: A structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding protein domain
    • Cheng, H., and Grishin, N. V. 2005. DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding protein domain. Prot. Sci. 14, 1902-1910.
    • (2005) Prot. Sci. , vol.14 , pp. 1902-1910
    • Cheng, H.1    Grishin, N.V.2
  • 2
    • 0019317327 scopus 로고
    • Analysis and prediction of protein β-sheet structures by a combinatorial approach
    • Cohen, F. E., Sternberg, M. J. E., and Taylor, W. R. 1980. Analysis and prediction of protein β-sheet structures by a combinatorial approach. Nature 285, 378-382.
    • (1980) Nature , vol.285 , pp. 378-382
    • Cohen, F.E.1    Sternberg, M.J.E.2    Taylor, W.R.3
  • 3
    • 0019997016 scopus 로고
    • Analysis and prediction of the packing of α-helices against a β-sheet in the tertiary structure of globular proteins
    • Cohen, F. E., Sternberg, M. J. E., and Taylor, W. R. 1982. Analysis and prediction of the packing of α-helices against a β-sheet in the tertiary structure of globular proteins. J. Mol. Biol. 156, 821-862.
    • (1982) J. Mol. Biol. , vol.156 , pp. 821-862
    • Cohen, F.E.1    Sternberg, M.J.E.2    Taylor, W.R.3
  • 4
    • 0030910802 scopus 로고    scopus 로고
    • Structural trees for protein superfamilies
    • Efimov, A. V. 1997. Structural trees for protein superfamilies. Proteins 28, 241-260.
    • (1997) Proteins , vol.28 , pp. 241-260
    • Efimov, A.V.1
  • 5
    • 0023479421 scopus 로고
    • Why do globular proteins fit the limited set of folding patterns?
    • Finkelstein, A. V., and Ptitsyn, O. B. 1987. Why do globular proteins fit the limited set of folding patterns? Prog. Biophys. Mol. Biol. 50, 171-190.
    • (1987) Prog. Biophys. Mol. Biol. , vol.50 , pp. 171-190
    • Finkelstein, A.V.1    Ptitsyn, O.B.2
  • 6
    • 0028181017 scopus 로고
    • An algorithm for automatically generating protein topology cartoons
    • Flores, T. P., Moss, D. S., and Thornton, J. M. 1994. An algorithm for automatically generating protein topology cartoons. Prot. Eng. 7, 31-37.
    • (1994) Prot. Eng. , vol.7 , pp. 31-37
    • Flores, T.P.1    Moss, D.S.2    Thornton, J.M.3
  • 8
    • 0026519315 scopus 로고
    • A lattice model for protein-structure prediction at low resolution
    • Hinds, D. A., and Levitt, M. 1992. A lattice model for protein-structure prediction at low resolution. Proc. Natl. Acad. Sci. USA 89, 2536-2540.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 2536-2540
    • Hinds, D.A.1    Levitt, M.2
  • 9
    • 0037418227 scopus 로고    scopus 로고
    • A global representation of protein fold space
    • Hou, J., Sims, G. E., Zhang, C., et al. 2003. A global representation of protein fold space. Proc. Natl. Acad. Sci. USA 100, 2386-2390.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 2386-2390
    • Hou, J.1    Sims, G.E.2    Zhang, C.3
  • 10
    • 0027251341 scopus 로고
    • The greek key motif-extraction, classification and analysis
    • Hutchinson, E. G. and Thornton, J. M. 1993. The greek key motif-extraction, classification and analysis. Protein Engineering 6, 233-245.
    • (1993) Protein Engineering , vol.6 , pp. 233-245
    • Hutchinson, E.G.1    Thornton, J.M.2
  • 12
    • 77950469105 scopus 로고    scopus 로고
    • De novo backbone scaffolds for protein design
    • MacDonald, J., Maksimiak, K., Sadowski, M., et al. 2010. De novo backbone scaffolds for protein design. Proteins 78, 1311-1325.
    • (2010) Proteins , vol.78 , pp. 1311-1325
    • MacDonald, J.1    Maksimiak, K.2    Sadowski, M.3
  • 13
    • 0017615801 scopus 로고
    • Logical analysis of the mechanism of protein folding: IV. Super-secondary structures
    • Nagano, K. 1977. Logical analysis of the mechanism of protein folding: IV. super-secondary structures. J. Mol. Biol. 109, 235-250.
    • (1977) J. Mol. Biol. , vol.109 , pp. 235-250
    • Nagano, K.1
  • 14
    • 0027220647 scopus 로고
    • Identification and classification of protein fold families
    • Orengo, C. A., Flores, T. P., Taylor, W. R., et al. 1993. Identification and classification of protein fold families. Prot. Eng. 6, 485-500.
    • (1993) Prot. Eng. , vol.6 , pp. 485-500
    • Orengo, C.A.1    Flores, T.P.2    Taylor, W.R.3
  • 15
    • 0344037144 scopus 로고
    • Handedness of crossover connections in beta-sheets
    • Richardson, J. 1976. Handedness of crossover connections in beta-sheets. Proc. Natl. Acad. Sci. USA 73, 2619-2623.
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 2619-2623
    • Richardson, J.1
  • 16
    • 0017387723 scopus 로고
    • β-Sheet topology and the relatedness of proteins
    • Richardson, J. S. 1977. β-Sheet topology and the relatedness of proteins. Nature 268, 495-500.
    • (1977) Nature , vol.268 , pp. 495-500
    • Richardson, J.S.1
  • 17
    • 0036643499 scopus 로고    scopus 로고
    • Distributions of beta sheets in proteins with application to structure prediction
    • Ruczinski, I., Kooperberg, C., Bonneau, R., et al. 2002. Distributions of beta sheets in proteins with application to structure prediction. Proteins 48, 85-97.
    • (2002) Proteins , vol.48 , pp. 85-97
    • Ruczinski, I.1    Kooperberg, C.2    Bonneau, R.3
  • 18
    • 0017610611 scopus 로고
    • On the conformation of proteins: The handedness of the connection between parallel β-strands
    • Sternberg, M. J. E., and Thornton, J. M. 1977. On the conformation of proteins: the handedness of the connection between parallel β-strands. J. Mol. Biol. 110, 269-283.
    • (1977) J. Mol. Biol. , vol.110 , pp. 269-283
    • Sternberg, M.J.E.1    Thornton, J.M.2
  • 19
    • 69849105908 scopus 로고    scopus 로고
    • Probing the "dark matter" of protein fold-space
    • Taylor, W., Hollup, S., MacDonald, J., et al. 2009. Probing the "dark matter" of protein fold-space. Structure 17, 1244-1252.
    • (2009) Structure , vol.17 , pp. 1244-1252
    • Taylor, W.1    Hollup, S.2    MacDonald, J.3
  • 20
    • 0037061460 scopus 로고    scopus 로고
    • A periodic table for protein structure
    • Taylor, W. R. 2002. A periodic table for protein structure. Nature 416, 657-660.
    • (2002) Nature , vol.416 , pp. 657-660
    • Taylor, W.R.1
  • 21
    • 34347383961 scopus 로고    scopus 로고
    • Evolutionary transitions in protein fold space
    • Taylor, W. R. 2007. Evolutionary transitions in protein fold space. Curr. Opin. Struct. Biol. 17, 354-361.
    • (2007) Curr. Opin. Struct. Biol. , vol.17 , pp. 354-361
    • Taylor, W.R.1
  • 23
    • 39749097808 scopus 로고    scopus 로고
    • Prediction of protein structure from ideal forms
    • Taylor, W. R., Bartlett, G. J., Chelliah, V., et al. 2008. Prediction of protein structure from ideal forms. Proteins 70, 1610-1619.
    • (2008) Proteins , vol.70 , pp. 1610-1619
    • Taylor, W.R.1    Bartlett, G.J.2    Chelliah, V.3
  • 24
    • 0027240033 scopus 로고
    • Topological and stereochemical restrictions in beta-sandwich protein structures
    • Woolfson, D., Evans, P., Hutchinson, E., et al. 1993. Topological and stereochemical restrictions in beta-sandwich protein structures. Prot. Eng. 6, 461-470.
    • (1993) Prot. Eng. , vol.6 , pp. 461-470
    • Woolfson, D.1    Evans, P.2    Hutchinson, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.