-
1
-
-
0034646597
-
The yeast ARG7 gene product is autoproteolyzed to two subunit peptides, yielding active ornithine acetyltransferase
-
Abadjieva, A., Hilven, P., Pauwels, K., and Crabeel, M. 2000. The yeast ARG7 gene product is autoproteolyzed to two subunit peptides, yielding active ornithine acetyltransferase. J. Biol. Chem. 275: 11361-11367.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 11361-11367
-
-
Abadjieva, A.1
Hilven, P.2
Pauwels, K.3
Crabeel, M.4
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0028865843
-
3D domain swapping: A mechanism for oligomer assembly
-
Bennett, M.J., Schlunegger, M.P., and Eisenberg, D. 1995. 3D domain swapping: A mechanism for oligomer assembly. Protein Sci. 4: 2455-2468.
-
(1995)
Protein Sci.
, vol.4
, pp. 2455-2468
-
-
Bennett, M.J.1
Schlunegger, M.P.2
Eisenberg, D.3
-
4
-
-
0034651632
-
A new variant of the Ntn hydrolase fold revealed by the crystal structure of L-aminopeptidase D-ala-esterase/amidase from Ochrobactrum anthropi
-
Bompard-Gilles, C., Villeret, V., Davies, G.J., Fanuel, L., Joris, B., Frere, J.M., and Van Beeumen, J. 2000. A new variant of the Ntn hydrolase fold revealed by the crystal structure of L-aminopeptidase D-ala-esterase/amidase from Ochrobactrum anthropi. Struct. Fold Des. 8: 153-162.
-
(2000)
Struct. Fold Des.
, vol.8
, pp. 153-162
-
-
Bompard-Gilles, C.1
Villeret, V.2
Davies, G.J.3
Fanuel, L.4
Joris, B.5
Frere, J.M.6
Van Beeumen, J.7
-
5
-
-
4143136285
-
Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase
-
Bonin, I., Martins, B.M., Purvanov, V., Fetzner, S., Huber, R., and Dobbek, H. 2004. Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase. Structure (Camb.) 12: 1425-1435.
-
(2004)
Structure (Camb.)
, vol.12
, pp. 1425-1435
-
-
Bonin, I.1
Martins, B.M.2
Purvanov, V.3
Fetzner, S.4
Huber, R.5
Dobbek, H.6
-
6
-
-
0004204457
-
-
Garland Publishing, New York
-
Branden, C. and Tooze, J. 1999. Introduction to protein structure, 2d ed., pp. 210-217. Garland Publishing, New York.
-
(1999)
Introduction to Protein Structure, 2d Ed.
, pp. 210-217
-
-
Branden, C.1
Tooze, J.2
-
7
-
-
0032564314
-
Structural symmetry: The three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase
-
Cirilli, M., Zheng, R., Scapin, G., and Blanchard, J.S. 1998. Structural symmetry: The three-dimensional structure of Haemophilus influenzae diaminopimelate epimerase. Biochemistry 37: 16452-16458.
-
(1998)
Biochemistry
, vol.37
, pp. 16452-16458
-
-
Cirilli, M.1
Zheng, R.2
Scapin, G.3
Blanchard, J.S.4
-
8
-
-
0037059062
-
Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-Å resolution
-
Dobbek, H., Gremer, L., Kiefersauer, R., Huber, R., and Meyer, O. 2002. Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-Å resolution. Proc. Natl. Acad. Sci. 99: 15971-15976.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 15971-15976
-
-
Dobbek, H.1
Gremer, L.2
Kiefersauer, R.3
Huber, R.4
Meyer, O.5
-
9
-
-
0037195119
-
Expanding protein universe and its origin from the biological Big Bang
-
Dokholyan, N.V., Shakhnovich, B., and Shakhnovich, E.I. 2002. Expanding protein universe and its origin from the biological Big Bang. Proc. Natl. Acad. Sci. 99: 14132-14136.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 14132-14136
-
-
Dokholyan, N.V.1
Shakhnovich, B.2
Shakhnovich, E.I.3
-
10
-
-
12844283915
-
X-ray crystal structure of ornithine acetyltransferase from the clavulanic acid biosynthesis gene cluster
-
Elkins, J.M., Kershaw, N.J., and Schofield, C.J. 2005. X-ray crystal structure of ornithine acetyltransferase from the clavulanic acid biosynthesis gene cluster. Biochem. J. 385: 565-573.
-
(2005)
Biochem. J.
, vol.385
, pp. 565-573
-
-
Elkins, J.M.1
Kershaw, N.J.2
Schofield, C.J.3
-
11
-
-
0033166501
-
The DmpA aminopeptidase from Ochrobactrum anthropi LMG7991 is the prototype of a new terminal nucleophile hydrolase family
-
Fanuel, L., Goffin, C., Cheggour, A., Devreese, B., Van Driessche, G., Joris, B., Van Beeumen, J., and Frere, J.M. 1999. The DmpA aminopeptidase from Ochrobactrum anthropi LMG7991 is the prototype of a new terminal nucleophile hydrolase family. Biochem. J. 341: 147-155.
-
(1999)
Biochem. J.
, vol.341
, pp. 147-155
-
-
Fanuel, L.1
Goffin, C.2
Cheggour, A.3
Devreese, B.4
Van Driessche, G.5
Joris, B.6
Van Beeumen, J.7
Frere, J.M.8
-
12
-
-
0023479421
-
Why do globular proteins fit the limited set of folding patterns?
-
Finkelstein, A.V. and Ptitsyn, O.B. 1987. Why do globular proteins fit the limited set of folding patterns? Prog. Biophys. Mol. Biol. 50: 171-190.
-
(1987)
Prog. Biophys. Mol. Biol.
, vol.50
, pp. 171-190
-
-
Finkelstein, A.V.1
Ptitsyn, O.B.2
-
13
-
-
0027258419
-
Why are the same protein folds used to perform different functions?
-
Finkelstein, A.V., Gutun, A.M., and Badretdinov, A. 1993. Why are the same protein folds used to perform different functions? FEBS Lett. 325: 23-28.
-
(1993)
FEBS Lett.
, vol.325
, pp. 23-28
-
-
Finkelstein, A.V.1
Gutun, A.M.2
Badretdinov, A.3
-
14
-
-
0036467162
-
Thioredoxin and peptide methionine sulfoxide reductase: Convergence of similar structure and function in distinct structural folds
-
Gladyshev, V.N. 2002. Thioredoxin and peptide methionine sulfoxide reductase: Convergence of similar structure and function in distinct structural folds. Proteins 46: 149-152.
-
(2002)
Proteins
, vol.46
, pp. 149-152
-
-
Gladyshev, V.N.1
-
15
-
-
0035783063
-
Fold change in evolution of protein structures
-
Grishin, N.V. 2001. Fold change in evolution of protein structures. J. Struct. Biol. 134: 167-185.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 167-185
-
-
Grishin, N.V.1
-
16
-
-
0037436376
-
Investigations on the maturation and regulation of archaebacterial proteasomes
-
Groll, M., Brandstetter, H., Bartunik, H., Bourenkow, G., and Huber, R. 2003. Investigations on the maturation and regulation of archaebacterial proteasomes. J. Mol. Biol. 327: 75-83.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 75-83
-
-
Groll, M.1
Brandstetter, H.2
Bartunik, H.3
Bourenkow, G.4
Huber, R.5
-
17
-
-
0032104544
-
Detection of internal repeats: How common are they?
-
Heringa, J. 1998. Detection of internal repeats: How common are they? Curr. Opin. Struct. Biol. 8: 338-345.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 338-345
-
-
Heringa, J.1
-
18
-
-
0030989408
-
Three-dimensional domain duplication, swapping and stealing
-
Heringa, J. and Taylor, W.R. 1997. Three-dimensional domain duplication, swapping and stealing. Curr. Opin. Struct. Biol. 7: 416-421.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 416-421
-
-
Heringa, J.1
Taylor, W.R.2
-
19
-
-
0000273676
-
The mononuclear molybdenum enzymes
-
Hille, R. 1996. The mononuclear molybdenum enzymes. Chem. Rev. 96: 2757-2816.
-
(1996)
Chem. Rev.
, vol.96
, pp. 2757-2816
-
-
Hille, R.1
-
20
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L. and Sander, C. 1993. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233: 123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
21
-
-
0029785147
-
Mapping the protein universe
-
_. 1996. Mapping the protein universe. Science 273: 595-603.
-
(1996)
Science
, vol.273
, pp. 595-603
-
-
-
22
-
-
0027483016
-
Nylon oligomer degradation gene, nylC, on plasmid pOAD2 from a Flavobacterium strain encodes endo-type 6-aminohexanoate oligomer hydrolase: Purification and characterization of the nylC gene product
-
Kakudo, S., Negoro, S., Urabe, I., and Okada, H. 1993. Nylon oligomer degradation gene, nylC, on plasmid pOAD2 from a Flavobacterium strain encodes endo-type 6-aminohexanoate oligomer hydrolase: Purification and characterization of the nylC gene product. Appl. Environ. Microbiol. 59: 3978-3980.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 3978-3980
-
-
Kakudo, S.1
Negoro, S.2
Urabe, I.3
Okada, H.4
-
23
-
-
0029150078
-
Characterization of endo-type 6-aminohexanoate-oligomer hydrolase from Flavobacterium sp.
-
_. 1995. Characterization of endo-type 6-aminohexanoate-oligomer hydrolase from Flavobacterium sp. J. Ferment. Bioeng. 80: 12-17.
-
(1995)
J. Ferment. Bioeng.
, vol.80
, pp. 12-17
-
-
-
24
-
-
0032450009
-
A structural comparison of molybdenum cofactor-containing enzymes
-
Kisker, C., Schindelin, H., Baas, D., Retey, J., Meckenstock, R.U., and Kroneck, P.M. 1998. A structural comparison of molybdenum cofactorcontaining enzymes. FEMS Microbiol. Rev. 22: 503-521.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 503-521
-
-
Kisker, C.1
Schindelin, H.2
Baas, D.3
Retey, J.4
Meckenstock, R.U.5
Kroneck, P.M.6
-
25
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. 1991. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24: 946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
26
-
-
3142532333
-
Structurally analogous proteins do exist!
-
Krishna, S.S. and Grishin, N.V. 2004. Structurally analogous proteins do exist! Structure (Camb.) 12: 1125-1127.
-
(2004)
Structure (Camb.)
, vol.12
, pp. 1125-1127
-
-
Krishna, S.S.1
Grishin, N.V.2
-
27
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E. and Henrick, K. 2004. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60: 2256-2268.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
28
-
-
0030979555
-
Circular permutations of natural protein sequences: Structural evidence
-
Lindqvist, Y. and Schneider, G. 1997. Circular permutations of natural protein sequences: Structural evidence. Curr. Opin. Struct. Biol. 7: 422-427.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 422-427
-
-
Lindqvist, Y.1
Schneider, G.2
-
29
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
Liu, Y. and Eisenberg, D. 2002. 3D domain swapping: As domains continue to swap. Protein Sci. 11: 1285-1299.
-
(2002)
Protein Sci.
, vol.11
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
30
-
-
0037174167
-
Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases
-
Liu, L., Iwata, K., Yohda, M., and Miki, K. 2002. Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases. FEBS Lett. 528: 114-118.
-
(2002)
FEBS Lett.
, vol.528
, pp. 114-118
-
-
Liu, L.1
Iwata, K.2
Yohda, M.3
Miki, K.4
-
31
-
-
0032743231
-
Thermolysin and mitochondrial processing peptidase: How far structure-functional convergence goes
-
Makarova, K.S. and Grishin, N.V. 1999. Thermolysin and mitochondrial processing peptidase: How far structure-functional convergence goes. Protein Sci. 8: 2537-2540.
-
(1999)
Protein Sci.
, vol.8
, pp. 2537-2540
-
-
Makarova, K.S.1
Grishin, N.V.2
-
32
-
-
0035816566
-
An invariant threonine is involved in self-catalyzed cleavage of the precursor protein for ornithine acetyltransferase
-
Marc, F., Weigel, P., Legrain, C., Glansdorff, N., and Sakanyan, V. 2001. An invariant threonine is involved in self-catalyzed cleavage of the precursor protein for ornithine acetyltransferase. J. Biol. Chem. 276: 25404-25410.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 25404-25410
-
-
Marc, F.1
Weigel, P.2
Legrain, C.3
Glansdorff, N.4
Sakanyan, V.5
-
33
-
-
0032104477
-
How far divergent evolution goes in proteins
-
Murzin, A.G. 1998. How far divergent evolution goes in proteins. Curr. Opin. Struct. Biol. 8: 380-387.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 380-387
-
-
Murzin, A.G.1
-
34
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E., Hubbard, T., and Chothia, C. 1995. SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247: 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
35
-
-
0033791268
-
Biodegradation of nylon oligomers
-
Negoro, S. 2000. Biodegradation of nylon oligomers. Appl. Microbiol. Biotechnol. 54: 461-466.
-
(2000)
Appl. Microbiol. Biotechnol.
, vol.54
, pp. 461-466
-
-
Negoro, S.1
-
36
-
-
0026677033
-
A new nylon oligomer degradation gene (nylC) on plasmid pOAD2 from a Flavobacterium sp.
-
Negoro, S., Kakudo, S., Urabe, I., and Okada, H. 1992. A new nylon oligomer degradation gene (nylC) on plasmid pOAD2 from a Flavobacterium sp. J. Bacteriol. 174: 7948-7953.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 7948-7953
-
-
Negoro, S.1
Kakudo, S.2
Urabe, I.3
Okada, H.4
-
37
-
-
0034495297
-
Structural comparison of Ntn-hydrolases
-
Oinonen, C. and Rouvinen, J. 2000. Structural comparison of Ntn-hydrolases. Protein Sci. 9: 2329-2337.
-
(2000)
Protein Sci.
, vol.9
, pp. 2329-2337
-
-
Oinonen, C.1
Rouvinen, J.2
-
38
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B., and Thornton, J.M. 1997. CATH - A hierarchic classification of protein domain structures. Structure 5: 1093-1108.
-
(1997)
Structure
, vol.5
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
39
-
-
0035782687
-
Review: What can structural classifications reveal about protein evolution?
-
Orengo, C.A., Sillitoe, I., Reeves, G., and Pearl, F.M. 2001. Review: What can structural classifications reveal about protein evolution? J. Struct. Biol. 134: 145-165.
-
(2001)
J. Struct. Biol.
, vol.134
, pp. 145-165
-
-
Orengo, C.A.1
Sillitoe, I.2
Reeves, G.3
Pearl, F.M.4
-
40
-
-
0037433034
-
PCMA: Fast and accurate multiple sequence alignment based on profile consistency
-
Pei, J., Sadreyev, R., and Grishin, N.V. 2003. PCMA: Fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19: 427-428.
-
(2003)
Bioinformatics
, vol.19
, pp. 427-428
-
-
Pei, J.1
Sadreyev, R.2
Grishin, N.V.3
-
41
-
-
0035161477
-
Structure refinement of the aldehyde oxidoreductase from Desulfovibrio gigas (MOP) at 1.28 Å
-
Rebelo, J.M., Dias, J.M., Huber, R., Moura, J.J., and Romao, M.J. 2001. Structure refinement of the aldehyde oxidoreductase from Desulfovibrio gigas (MOP) at 1.28 Å. J. Biol. Inorg. Chem. 6: 791-800.
-
(2001)
J. Biol. Inorg. Chem.
, vol.6
, pp. 791-800
-
-
Rebelo, J.M.1
Dias, J.M.2
Huber, R.3
Moura, J.J.4
Romao, M.J.5
-
42
-
-
0344037144
-
Handedness of crossover connections in β sheets
-
Richardson, J.S. 1976. Handedness of crossover connections in β sheets. Proc. Natl. Acad. Sci. 73: 2619-2623.
-
(1976)
Proc. Natl. Acad. Sci.
, vol.73
, pp. 2619-2623
-
-
Richardson, J.S.1
-
43
-
-
0032568859
-
Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution
-
Russell, R.B. 1998. Detection of protein three-dimensional side-chain patterns: New examples of convergent evolution. J. Mol. Biol. 279: 1211-1227.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 1211-1227
-
-
Russell, R.B.1
-
44
-
-
3242880478
-
FoldMiner and LOCK 2: Protein structure comparison and motif discovery on the web
-
Shapiro, J., and Brutlag, D. 2004a. FoldMiner and LOCK 2: Protein structure comparison and motif discovery on the web. Nucleic Acids Res. 32: W536-541.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Shapiro, J.1
Brutlag, D.2
-
45
-
-
0347994105
-
FoldMiner: Structural motif discovery using an improved superposition algorithm
-
_. 2004b. FoldMiner: Structural motif discovery using an improved superposition algorithm. Protein Sci. 13: 278-294.
-
(2004)
Protein Sci.
, vol.13
, pp. 278-294
-
-
-
46
-
-
0017610611
-
On the conformation of proteins: The handedness of the connection between parallel β-strands
-
Sternberg, M.J. and Thornton, J.M. 1977. On the conformation of proteins: The handedness of the connection between parallel β-strands. J. Mol. Biol. 110: 269-283.
-
(1977)
J. Mol. Biol.
, vol.110
, pp. 269-283
-
-
Sternberg, M.J.1
Thornton, J.M.2
-
47
-
-
0035029073
-
Protein structure: Geometry, topology and classification
-
Taylor, W.R., May, A.C.W., Brown, N.P., and Aszodi, A. 2001. Protein structure: Geometry, topology and classification. Rep. Prog. Phys. 64: 517-590.
-
(2001)
Rep. Prog. Phys.
, vol.64
, pp. 517-590
-
-
Taylor, W.R.1
May, A.C.W.2
Brown, N.P.3
Aszodi, A.4
-
48
-
-
0036153761
-
Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus
-
Truglio, J.J., Theis, K., Leimkuhler, S., Rappa, R., Rajagopalan, K.V., and Kisker, C. 2002. Crystal structures of the active and alloxanthineinhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus. Structure (Camb.) 10: 115-125.
-
(2002)
Structure (Camb.)
, vol.10
, pp. 115-125
-
-
Truglio, J.J.1
Theis, K.2
Leimkuhler, S.3
Rappa, R.4
Rajagopalan, K.V.5
Kisker, C.6
|