메뉴 건너뛰기




Volumn 17, Issue 9, 2010, Pages 1129-1144

Combinatorial structure of genome rearrangements scenarios

Author keywords

computational molecular biology; dynamic programming; genomic rearrangements

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; GENE REARRANGEMENT; GENOME;

EID: 77958034897     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2010.0126     Document Type: Article
Times cited : (18)

References (26)
  • 1
    • 84957002571 scopus 로고    scopus 로고
    • Exploring the set of all minimal sequences of reversals-an application to test the replication-directed reversal hypothesis
    • Springer-Verlag
    • Ajana, Y., Lefebvre, J.-F., Tillier, E. R. M., et al. 2002. Exploring the set of all minimal sequences of reversals-an application to test the replication-directed reversal hypothesis. Proc. WABI '02 300-315. Springer-Verlag.
    • (2002) Proc. WABI '02 , pp. 300-315
    • Ajana, Y.1    Lefebvre, J.-F.2    Tillier, E.R.M.3
  • 2
    • 0346397785 scopus 로고    scopus 로고
    • Random generation of trees and other combinatorial objects
    • Barcucci, E., Del Lungo, A., and Pergola, E. 1999. Random generation of trees and other combinatorial objects. Theoret. Comput. Sci. 218:219-232.
    • (1999) Theoret. Comput. Sci. , vol.218 , pp. 219-232
    • Barcucci, E.1    Del Lungo, A.2    Pergola, E.3
  • 6
    • 49249120896 scopus 로고    scopus 로고
    • Exploring the solution space of sorting by reversals, with experiments and an application to evolution
    • Braga, M. D. V., Sagot, M.-F., Scornavacca, C., et al. 2008. Exploring the solution space of sorting by reversals, with experiments and an application to evolution. IEEE/ACM Trans. Comput. Biol. Bioinform. 5:348-356.
    • (2008) IEEE/ACM Trans. Comput. Biol. Bioinform , vol.5 , pp. 348-356
    • Braga, M.D.V.1    Sagot, M.-F.2    Scornavacca, C.3
  • 10
    • 0001432804 scopus 로고
    • An occupancy discipline and applications
    • Konheim, A. G., and Weiss, B. 1966. An occupancy discipline and applications. SIAM J. Appl. Math. 14:1266-1274.
    • (1966) SIAM J. Appl. Math. , vol.14 , pp. 1266-1274
    • Konheim, A.G.1    Weiss, B.2
  • 11
    • 0000513203 scopus 로고
    • Sur les partitions non croisées d'un cycle
    • Kreweras, G. 1972. Sur les partitions non croisées d'un cycle. Discrete Math. 1:333-350.
    • (1972) Discrete Math. , vol.1 , pp. 333-350
    • Kreweras, G.1
  • 13
    • 77958042099 scopus 로고    scopus 로고
    • Efficient sampling of parsimonious inversion histories with application to genome rearrangement in Yersinia
    • Miklós, I., and Darling, A. 2009. Efficient sampling of parsimonious inversion histories with application to genome rearrangement in Yersinia. Genome Biol. Evol. 1:153-164.
    • (2009) Genome Biol. Evol. , vol.1 , pp. 153-164
    • Miklós, I.1    Darling, A.2
  • 14
    • 26444445736 scopus 로고    scopus 로고
    • Genome rearrangement in mitochondria and its computational biology
    • Miklós, I., and Hein, J. 2004. Genome rearrangement in mitochondria and its computational biology. Lect. Notes Bioinform. 3388, 85-96.
    • (2004) Lect. Notes Bioinform , vol.3388 , pp. 85-96
    • Miklós, I.1    Hein, J.2
  • 15
    • 34250340516 scopus 로고    scopus 로고
    • Sorting by translocations via reversals theory
    • Ozery-Flato, M., and Shamir, R. 2007. Sorting by translocations via reversals theory. J. Comput. Biol. 14:408-422.
    • (2007) J. Comput. Biol. , vol.14 , pp. 408-422
    • Ozery-Flato, M.1    Shamir, R.2
  • 16
    • 0038271921 scopus 로고    scopus 로고
    • Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
    • Pevzner, P., and Tesler, G. 2003. Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution. Proc. Natl. Acad. Sci. USA 100:7672-7677.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7672-7677
    • Pevzner, P.1    Tesler, G.2
  • 17
    • 0000893747 scopus 로고
    • Neuer beweis eines satzes ber permutationen
    • Prüfer, H. 1918. Neuer beweis eines satzes ber permutationen. Arch. Math. Phys. 27:742-744.
    • (1918) Arch. Math. Phys. , vol.27 , pp. 742-744
    • Prüfer, H.1
  • 19
    • 23844460187 scopus 로고    scopus 로고
    • Chromosomal breakpoint reuse in genome sequence rearrangement
    • Sankoff, D., and Trinh, P. 2005. Chromosomal breakpoint reuse in genome sequence rearrangement. J. Comput. Biol. 12:812-821.
    • (2005) J. Comput. Biol. , vol.12 , pp. 812-821
    • Sankoff, D.1    Trinh, P.2
  • 20
    • 0036376081 scopus 로고    scopus 로고
    • An algorithm to enumerate all sorting reversals
    • Siepel, A. C. 2002. An algorithm to enumerate all sorting reversals. Proc. RECOMB '02 281-290.
    • (2002) Proc. RECOMB '02 , pp. 281-290
    • Siepel, A.C.1
  • 22
    • 0347413370 scopus 로고    scopus 로고
    • Parking functions and noncrossing partitions
    • Stanley, R. P. 1997. Parking functions and noncrossing partitions. Electron. J. Combin. 4: R20.
    • (1997) Electron. J. Combin , vol.4
    • Stanley, R.P.1
  • 25
    • 34250359911 scopus 로고    scopus 로고
    • Paths and cycles in breakpoint graphs of random multichromosomal genomes
    • Xu, A. W., Zheng, C., and Sankoff, D. 2007. Paths and cycles in breakpoint graphs of random multichromosomal genomes. J. Comput. Biol. 14:423-435.
    • (2007) J. Comput. Biol. , vol.14 , pp. 423-435
    • Xu, A.W.1    Zheng, C.2    Sankoff, D.3
  • 26
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • Yancopoulos, S., Attie, O., and Friedberg, R. 2005. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21:3340-3346.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.