Toward a conceptual framework for biology

Quarterly Review of Biology

Volumn 85, Issue 3, 2010, Pages 293-318

  Scheiner, Samuel M ^a  

^a National Science Foundation   (United Kingdom)

Author keywords

Biology; Cell; Ecology; Evolution; Genetics; Model; Organism; Theory

Indexed keywords

ANIMAL; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; ECOSYSTEM; EDUCATION; EVOLUTION;

ANIMALS; BIOLOGY; ECOSYSTEM; EVOLUTION; MODELS, BIOLOGICAL; MODELS, GENETIC; BIOLOGICAL EVOLUTION;

EID: 77957994649     PISSN: 00335770     EISSN: None     Source Type: Journal    
DOI: 10.1086/655117     Document Type: Article

References (114)

1. Allen A. P., Brown J. H., Gillooly J. F. 2002. Global biodiversity, biochemical kinetics, and the energeticequivalence rule. Science 297(5586):1545-1548.
2. Allen D., Tanner K. 2005. Infusing active learning into the large-enrollment biology class: seven strategies, from the simple to complex. CBE-Life Sciences Education 4(4):262-268.
3. Beatty J. 1997. Why do biologists argue like they do? Philosophy of Science 64(Supplement):S432-S443.
4. Berrigan D., Scheiner S. M. 2004. Modeling the evolution of phenotypic plasticity. Pages 82-97 in Phenotypic Plasticity. Functional and Conceptual Approaches, edited by T. J. DeWitt and S. M. Scheiner. New York: Oxford University Press.
5. Beurton P. J., Falk R., Rheinberger H.-J., editors. 2000. The Concept of the Gene in Development and Evolution: Historical and Epistemological Perspectives. Cambridge (UK) and New York: Cambridge University Press.
6. Bowler P. J. 1983. The Eclipse of Darwinism: Anti- Darwinian Evolution Theories in the Decades around 1900. Baltimore (MD): Johns Hopkins University Press.
7. Bowler P. J. 2004. The specter of Darwinism: The popular image of Darwinism in early twentiethcentury Britain. Pages 48-68 in Darwinian Heresies, edited by A. Lustig et al. Cambridge (UK): Cambridge University Press.
8. Brandon R. N. 1997. Does biology have laws? The experimental evidence. Philosophy of Science 64(Supplement): S444-S457.
9. Brooker R. J. 2008. Genetics: Analysis and Principles. Third Edition. New York: McGraw Hill.
10. Brown J. H., Gillooly J. F., Allen A. P., Savage V. M., West G. B. 2004. Toward a metabolic theory of ecology. Ecology 85(7):1771-1789.
11. Campbell N. A., Reece J. B., Taylor M. R., Simon E. J., Dickey J. L., Liebeart R. M. 2009. Biology: Concepts & Connections. Sixth Edition. New York: Benjamin Cummings.
12. Clements F. E. 1937. Nature and structure of the climax. Journal of Ecology 24(1):252-284.
13. Collins J. P. 1986. Evolutionary ecology and the use of natural selection in ecological theory. Journal of the History of Biology 19:257-288.
14. Costanzo M., Baryshnikova A., Bellay J., Kim Y., Spear E. D., Sevier C. S., Ding H., et al. 2010. The genetic landscape of a cell. Science 327(5964):425-431.
15. Darwin C. R. 1859. On the Origin of Species by Means of Natural Selection. London (UK): John Murray.
16. Del Rio C. M. 2008. Metabolic theory or metabolic models? Trends in Ecology & Evolution 23(5):256-260.
17. Dobzhansky T. 1964. Biology, molecular and organismic. American Zoologist 4(4):443-452.
18. Dutrochet H. 1824. Recherches anatomiques et physiologiques sur la structure intime des animaux et des végétaux, et sur leur motiliteé. Paris (France): J. B. Baillier̀e.
19. Ebert-May D., Brewer C., Allred S. 1997. Innovation in large lectures-teaching for active learning. Bioscience 47(9):601-607.
20. Eldredge N., Gould S. J. 1972. Punctuated equilibria: An alternative to phyletic gradualism. Pages 82- 115 in Models in Paleontology, edited by T. Schopf. San Francisco (CA): Freeman, Cooper and Company.
21. Endler J. A. 1986. Natural Selection in the Wild. Princeton (NJ): Princeton University Press.
22. Fauth J. E., Bernado J., Camara M., Resetarits W. J., Van Buskirk J., Jr., McCollum S. A. 1996. Simplifying the jargon of community ecology: A conceptual approach. American Naturalist 147(2):282-286.
23. Fisher R. A. 1930. The Genetical Theory of Natural Selection. Oxford (UK): Clarendon Press.
24. Forster J. R. 1778. Observations Made during a Voyage Round the World, on Physical Geography, Natural History, and Ethnic Philosophy. London (UK): G. Robinson.
25. Fox Keller E. 2007. A clash of two cultures. Nature 445:603.
26. Frank S. A. 2009. Natural selection maximizes Fisher information. Journal of Evolutionary Biology 22:231-244.
27. Giere R. N. 1988. Explaining Science: A Cognitive Approach. Chicago (IL): University of Chicago Press.
28. Gilbert S. F. 2006. Developmental Biology. Eighth Edition. Sunderland (MA): Sinauer Associates.
29. Gilbert S. F., Epel D. 2009. Ecological Developmental Biology: Integrating Epigenetics, Medicine, and Evolution. Sunderland (MA): Sinauer Associates.
30. Gleason H. A. 1926. The individualistic concept of the plant association. Bulletin of the Torrey Botanical Club 53:7-26.
31. Gonzalgo M. L., Jones P. A. 1997. Mutagenic and epigenetic effects of DNA methylation. Mutation Research/Reviews in Mutation Research 386(2):107-118.
32. Gould S. J., Eldredge N. 1977. Punctuated equilibria: The tempo and mode of evolution reconsidered. Paleobiology 3:115-151.
33. Gould S. J., Eldredge N. 1993. Punctuated equilibrium comes of age. Nature 366(6452):223-227.
34. Griesemer J. 2006. Theoretical integration, cooperation, and theories as tracking devices. Biological Theory 1(1):4-7.
35. Griffiths G. 2007. Cell evolution and the problem of membrane topology. Nature Reviews Molecular Cell Biology 8:1018-1024.
36. Gurevitch J., Scheiner S. M., Fox G. A. 2006. The Ecology of Plants. Second Edition. Sunderland (MA): Sinauer Associates.
37. Hansen T. F., Houle D. 2008. Measuring and comparing evolvability and constraint in multivariate characters. Journal of Evolutionary Biology 21(5):1201-1219.
38. Hastings A. 2011. Single species population dynamics and its theoretical underpinnings. In The Theory of Ecology, edited by S. M. Scheiner and M. R. Willig. Chicago (IL): University of Chicago Press.
39. Hedges S. B., Blair J. E., Venturi M. L., Shoe J. L. 2004. A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evolutionary Biology 4:2.
40. Hey J. 2001. The mind of the species problem. Trends in Ecology & Evolution 16(7):326-329.
41. Holt R. D. 2011. Natural enemy-victim interactions: do we have a unified theory, yet? In The Theory of Ecology, edited by S. M. Scheiner and M. R. Willig. Chicago (IL): University of Chicago Press.
42. Hull D. L. 2006. The essence of scientific theories. Biological Theory 1(1):17-19.
43. Huxley J. S. 1942. Evolution: The Modern Synthesis. London (UK): George Allen & Unwin.
44. Ideker T., Galitski T., Hood L. 2001. A new approach to decoding life: systems biology. Annual Review of Genomics and Human Genetics 2:343-372.
45. Kendall B. E., Fox G. A. 2003. Unstructured individual variation and demographic stochasticity. Conservation Biology 17:1170-1172.
46. Kimura M. 1954. Process leading to quasi-fixation of genes in natural populations due to random fluctuations of selection intensities. Genetics 39:280-295.
47. King D., Roughgarden J. 1982. Multiple switches between vegetative and reproductive growth in annual plants. Theoretical Population Biology 21:194-204.
48. Kitano H. 2002. Systems biology: A brief overview. Science 295(5560):1662-1664.
49. Kolasa J., Pickett S. T. A. 1989. Ecological systems and the concept of biological organization. Proceedings of the National Academy of Sciences USA 86(22):8837-8841.
50. Kuhn T. S. 1962. The Structure of Scientific Revolutions. Chicago (IL): University of Chicago Press.
51. Kutschera U., Niklas K. J. 2004. The modern theory of biological evolution: An expanded synthesis. Naturwissenschaften 91:255-276.
52. Laird P. W., Jaenisch R. 1996. The role of DNA methylation in cancer genetics and epigenetics. Annual Review of Genetics 30:441-464.
53. Laudan L. 1977. Progress and Its Problems: Toward a Theory of Scientific Growth. Berkeley (CA): University of California Press.
54. Lewin B. 2008. Genes IX. Ninth Edition. Sudbury (MA): Jones and Bartlett.
55. Lintilhac P. M. 1999. Toward a theory of cellularity: speculations on the nature of the living cell. Bio- Science 49:59-68.
56. Lodish H., Berk A., Kaiser C. A., Krieger M., Scott M. P., Bretscher A., Ploegh H., Matsudaira P. 2008. Molecular Cell Biology. Sixth Edition. New York: W. H. Freeman.
57. Longino H. E. 2002. The Fate of Knowledge. Princeton (NJ): Princeton University Press.
58. Lorenz E. N. 1963. Deterministic nonperiodic flow. Journal of the Atmospheric Sciences 20(2):130-141.
59. Losick R., Stragier P. 1992. Crisscross regulation of cell-type-specific gene expression during development in B. subtilis. Nature 355:601-604.
60. Lynch M. 2008. The cellular, developmental and population-genetic determinants of mutation-rate evolution. Genetics 180:933-943.
61. Lynch M., Walsh B. 1998. Genetics and Analysis of Quantitative Traits. Sunderland (MA): Sinauer Associates.
62. MacArthur R. H., Wilson E. O. 1967. The Theory of Island Biogeography. Princeton (NJ): Princeton University Press.
63. Mayr E. 1982. The Growth of Biological Thought. Cambridge (MA): Belknap Press.
64. Mayr E., Provine W. B. 1980. The Evolutionary Synthesis: Diversity, Evolution, and Inheritance. Cambridge (MA): Harvard University Press.
65. Mendel J. G. 1865. Versuche über Pflanzen-Hybriden. Verhandlungen des naturforschenden Vereines in Brünn 4:3-47.
66. Mesoudi A. 2007. A Darwinian theory of cultural evolution can promote an evolutionary synthesis for the social sciences. Biological Theory 2(3):263-275.
67. Michod R. E., Levin B. R., editors. 1988. The Evolution of Sex: An Examination of Current Ideas. Sunderland (MA): Sinauer Publishers.
68. Mitchell S. D. 1997. Pragmatic laws. Philosophy of Science 64:S468-S479.
69. Mitman G. 1992. The State of Nature: Ecology, Community, and American Social Thought. Chicago (IL): University of Chicago Press.
70. Morgan T. H. 1911. The origin of five mutations in eye color in Drosophila and their modes of inheritance. Science 33(849):534-537.
71. Morgan T. H. 1917. The theory of the gene. American Naturalist 51:513-544.
72. [NRC] National Research Council, Committee on Undergraduate Biology Education to Prepare Research Scientists for the 21st Century. 2003. Bio2010: Transforming Undergraduate Education for Future Research Biologists. Washington (DC): National Academies Press.
73. [NRC] National Research Council, Committee on Defining and Advancing the Conceptual Basis of Biological Sciences in the 21st Century. 2008. The Role of Theory in Advancing 21st Century Biology: Catalyzing Transformative Research. Washington (DC): National Academies Press.
74. [NRC] National Research Council, Committee on a New Biology for the 21st Century. 2009. A New Biology for the 21st Century: Ensuring the United States Leads the Coming Biology Revolution. Washington (DC): National Academies Press.
75. Pepper J. W., Herron M. D. 2008. Does biology need an organism concept? Biological Reviews 83(4):621-627.
76. Philippson M. 1921. Les lois de la résistance électrique des tissus vivants. Académie royale de Belgique. Bulletin de la classe des sciences 7:387-403.
77. Pickett S. T. A., Kolasa J., Jones C. G. 2007. Ecological Understanding: The Nature of Theory and the Theory of Nature. Second Edition. Amsterdam (The Netherlands) and Boston (MA): Elsevier.
78. Pierce B. 2007. Genetics - A Conceptual Approach. Third Edition. New York: W. H. Freeman.
79. Portin P. 1993. The concept of the gene: short history and present status. Quarterly Review of Biology 68(2): 173-223.
80. Price G. R. 1970. Selection and covariance. Nature 227:520-521.
81. Proulx S. R., Promislow D. E. L., Phillips P. C. 2005. Network thinking in ecology and evolution. Trends in Ecology & Evolution 20(6):345-353.
82. Quastler H., editor. 1953. Essays on the Use of Information Theory in Biology. Urbana (IL): University of Illinois Press.
83. Reason P., Goodwin B. C. 1999. Toward a science of qualities in organizations: lessons from complexity theory and postmodern biology. Concepts and Transformations 4(3):281-317.
84. Reydon T. A. C. 2005. On the nature of the species problem and the four meanings of 'species.' Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 36:135-158.
85. Roach D. A., Gampe J. 2004. Age-specific demography in Plantago: uncovering age-dependent mortality in a natural population. American Naturalist 164(1):60-69.
86. Roff D. A. 1992. The Evolution of Life Histories: Theory and Analysis. New York: Chapman and Hall.
87. Ruse M. 1999. The Darwinian Revolution: Science Red in Tooth and Claw. Second Edition. Chicago (IL): University of Chicago Press.
88. Sadava D., Heller H. C., Orians G. H., Purves W. K., Hillis D. 2008. Life: The Science of Biology. Eighth Edition. Sunderland (MA): Sinauer Associates.
89. Schaffer W. N. 1983. On the application of optimal control theory to the general life history problem. American Naturalist 121(3):418-431.
90. Scheid O. M., Afsar K., Paszkowski J. 1998. Release of epigenetic gene silencing by trans-acting mutations in Arabidopsis. Proceedings of the National Academy of Sciences USA 95(2):632-637.
91. Scheiner S. M. 1993. Genetics and evolution of phenotypic plasticity. Annual Review of Ecology and Systematics 24:35-68.
92. Scheiner S. M., Willig M. R. 2008. A general theory of ecology. Theoretical Ecology 1:21-28.
93. Scheiner S. M., Willig M. R. 2011a. A general theory of ecology. In The Theory of Ecology, edited by S. M.
94. Scheiner S. M., Willig M. R. 2011b. The Theory of Ecology. Chicago (IL): University of Chicago Press.
95. Simpson G. G. 1944. Tempo and Mode in Evolution. New York: Columbia University Press.
96. Smith A. C., Stewart R., Shields P., Hayes-Klosteridis J., Robinson P., Yuan R. 2005. Introductory biology courses: A framework to support active learning in large enrollment introductory science courses. CBE-Life Sciences Education 4(2):143-156.
97. Smocovitis V. B. 1996. Unifying Biology: The Evolutionary Synthesis and Evolutionary Biology. Princeton (NJ): Princeton University Press.
98. Sober E. 1997. Two outbreaks of lawlessness in recent philosophy of biology. Philosophy of Science 64 (supplement):S458-S467.
99. Solari C. A., Kessler J. O., Michod R. E. 2006. A hydrodynamics approach to the evolution of multicellularity: flagellar motility and germ-soma differentiation in volvocalean green algae. American Naturalist 167:537-554.
100. Suppe F. 1977. The Structure of Scientific Theories. Second Edition. Urbana (IL): University of Illinois Press.
101. van Fraassen B. 1980. The Scientific Image. Oxford (UK) and New York: Oxford University Press.
102. von Bertalanffy L. 1950. The theory of open systems in physics and biology. Science 111(2872):23-29.
103. von Bertalanffy L. 1951. General systems theory: A new approach to unity of science. Human Biology 23:303-361.
104. von Humboldt A. 1808. Ansichten der Natur mit wissenschaftlichen Erlauterungen. Tübingen (Germany): J. G. Cotta.
105. Wagner G. P. 1989. Multivariate mutation-selection balance with constrained pleiotropic effects. Genetics 122:223-234.
106. Watson J. D., Crick F. H. C. 1953. Genetical implica- tions of the structure of deoxyribonucleic acid. Nature 171:964-967.
107. West-Eberhard M. J. 2003. Developmental Plasticity and Evolution. New York: Oxford University Press.
108. West G. B., Brown J. H., Enquist B. J. 1997. A general model for the origin of allometric scaling laws in biology. Science 276(5309):122-126.
109. Whewell W. 1858. Novum Organon Renovatum. London (UK): J. W. Parker and Son.
110. Wilkins A. S., Holliday R. 2009. The evolution of meiosis from mitosis. Genetics 181:3-12.
111. Wilson D. S. 2002. Darwin's Cathedral: Evolution, Religion, and the Nature of Society. Chicago (IL): University of Chicago Press.
112. Wilson E. B. 1896. The Cell in Development and Inheritance. New York: Macmillan.
113. Wimsatt W. C. 2007. Re-engineering Philosophy for Limited Beings: Piecewise Approximations to Reality. Cambridge (MA): Harvard University Press.
114. Wolkenhauer O. 2001. Systems biology: The reincarnation of systems theory applied in biology? Briefings in Bioinformatics 2(3):258-270.