-
1
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen CB. Principles that govern the folding of protein chains. Science 1973;181:223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
2
-
-
59949104762
-
Re-engineering a beta-lactamase using prototype peptides from a library of local structural motifs
-
Risso VA, Primo ME, Ermácora MR. Re-engineering a beta-lactamase using prototype peptides from a library of local structural motifs. Protein Sci 2009;18:440-449.
-
(2009)
Protein Sci
, vol.18
, pp. 440-449
-
-
Risso, V.A.1
Primo, M.E.2
Ermácora, M.R.3
-
3
-
-
0242720342
-
Mechanismbased protein design: attempted "nucleation-condensation" approach to a possible minimal helix-bundle protein
-
Mohanraja K, Dhanasekaran M, Kundu B, Durani S. Mechanismbased protein design: attempted "nucleation-condensation" approach to a possible minimal helix-bundle protein. Biopolymers 2003;70:355-363.
-
(2003)
Biopolymers
, vol.70
, pp. 355-363
-
-
Mohanraja, K.1
Dhanasekaran, M.2
Kundu, B.3
Durani, S.4
-
4
-
-
0033694923
-
De novo design of helical bundles as models for understanding protein folding and function
-
Hill RB, Raleigh DP, Lombardi A, DeGrado WF. De novo design of helical bundles as models for understanding protein folding and function. Acc Chem Res 2000;33:745-754.
-
(2000)
Acc Chem Res
, vol.33
, pp. 745-754
-
-
Hill, R.B.1
Raleigh, D.P.2
Lombardi, A.3
DeGrado, W.F.4
-
5
-
-
0028076788
-
Reversed-phase liquid chromatography as a useful probe of hydrophobic interactions involved in protein folding and protein stability
-
Hodges RS, Zhu BY, Zhou NE, Mant CT. Reversed-phase liquid chromatography as a useful probe of hydrophobic interactions involved in protein folding and protein stability. J Chromatogr A 1994;676:3-15.
-
(1994)
J Chromatogr A
, vol.676
, pp. 3-15
-
-
Hodges, R.S.1
Zhu, B.Y.2
Zhou, N.E.3
Mant, C.T.4
-
6
-
-
0034713846
-
Involvement of electrostatic interactions in the mechanism of peptide folding induced by sodium dodecyl sulfate binding
-
Montserret R, McLeish MJ, Bockmann A, Geourjon C, Penin F. Involvement of electrostatic interactions in the mechanism of peptide folding induced by sodium dodecyl sulfate binding. Biochemistry 2000;39:8362-8373.
-
(2000)
Biochemistry
, vol.39
, pp. 8362-8373
-
-
Montserret, R.1
McLeish, M.J.2
Bockmann, A.3
Geourjon, C.4
Penin, F.5
-
7
-
-
0030816685
-
Mechanism of helix induction by trifluoroethanol: a framework for extrapolating the helix-forming properties of peptides from trifluoroethanol/water mixtures back to water
-
Luo P, Baldwin RL. Mechanism of helix induction by trifluoroethanol: a framework for extrapolating the helix-forming properties of peptides from trifluoroethanol/water mixtures back to water. Biochemistry 1997;36:8413-8421.
-
(1997)
Biochemistry
, vol.36
, pp. 8413-8421
-
-
Luo, P.1
Baldwin, R.L.2
-
8
-
-
0037126023
-
Mechanism by which 2,2,2-trifluoroethanol/water mixtures stabilize secondarystructure formation in peptides: a molecular dynamics study
-
Roccatano D, Colombo G, Fioroni M, Mark AE. Mechanism by which 2,2,2-trifluoroethanol/water mixtures stabilize secondarystructure formation in peptides: a molecular dynamics study. Proc Natl Acad Sci USA 2002;99:12179-12184.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12179-12184
-
-
Roccatano, D.1
Colombo, G.2
Fioroni, M.3
Mark, A.E.4
-
9
-
-
70350109497
-
How chain length and charge affect surfactant denaturation of acyl coenzyme A binding protein (ACBP)
-
Andersen KK, Otzen DE. How chain length and charge affect surfactant denaturation of acyl coenzyme A binding protein (ACBP). J Phys Chem B 2009;113:13942-13952.
-
(2009)
J Phys Chem B
, vol.113
, pp. 13942-13952
-
-
Andersen, K.K.1
Otzen, D.E.2
-
10
-
-
0034673991
-
Identification of initiation sites for T4 lysozyme folding using CD and NMR spectroscopy of peptide fragments
-
Najbar LV, Craik DJ, Wade JD, McLeish MJ. Identification of initiation sites for T4 lysozyme folding using CD and NMR spectroscopy of peptide fragments. Biochemistry 2000;39:5911-5920.
-
(2000)
Biochemistry
, vol.39
, pp. 5911-5920
-
-
Najbar, L.V.1
Craik, D.J.2
Wade, J.D.3
McLeish, M.J.4
-
11
-
-
0026710554
-
Protein structures in SDS micelle-protein complexes
-
Parker W, Song PS. Protein structures in SDS micelle-protein complexes. Biophys J 1992;61:1435-1439.
-
(1992)
Biophys J
, vol.61
, pp. 1435-1439
-
-
Parker, W.1
Song, P.S.2
-
12
-
-
34247598768
-
Consolidation of the thioredoxin fold by peptide recognition: interaction between E. coli thioredoxin fragments 1-93 and 94-108
-
Santos J, Marino-Buslje C, Kleinman C, Ermacora MR, Delfino JM. Consolidation of the thioredoxin fold by peptide recognition: interaction between E. coli thioredoxin fragments 1-93 and 94-108. Biochemistry 2007;46:5148-5159.
-
(2007)
Biochemistry
, vol.46
, pp. 5148-5159
-
-
Santos, J.1
Marino-Buslje, C.2
Kleinman, C.3
Ermacora, M.R.4
Delfino, J.M.5
-
13
-
-
59249107533
-
Structural selection of a native fold by peptide recognition. Insights into the thioredoxin folding mechanism
-
Santos J, Sica MP, Buslje CM, Garrote AM, Ermacora MR, Delfino JM. Structural selection of a native fold by peptide recognition. Insights into the thioredoxin folding mechanism. Biochemistry 2009;48:595-607.
-
(2009)
Biochemistry
, vol.48
, pp. 595-607
-
-
Santos, J.1
Sica, M.P.2
Buslje, C.M.3
Garrote, A.M.4
Ermacora, M.R.5
Delfino, J.M.6
-
14
-
-
0028447768
-
Elucidating the folding problem of helical peptides using empirical parameters
-
Muñóz V, Serrano L. Elucidating the folding problem of helical peptides using empirical parameters. Nat Struct Biol 1994;1:399-409.
-
(1994)
Nat Struct Biol
, vol.1
, pp. 399-409
-
-
Muñóz, V.1
Serrano, L.2
-
15
-
-
0028873081
-
Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides
-
Muñóz V, Serrano L. Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides. J Mol Biol 1995;245:275-296.
-
(1995)
J Mol Biol
, vol.245
, pp. 275-296
-
-
Muñóz, V.1
Serrano, L.2
-
16
-
-
0028834210
-
Elucidating the folding problem of helical peptides using empirical parameters. III. Temperature and pH dependence
-
Muñóz V, Serrano L. Elucidating the folding problem of helical peptides using empirical parameters. III. Temperature and pH dependence. J Mol Biol 1995;245:297-308.
-
(1995)
J Mol Biol
, vol.245
, pp. 297-308
-
-
Muñóz, V.1
Serrano, L.2
-
17
-
-
0032562654
-
Position dependence of non-polar amino acid intrinsic helical propensities
-
Petukhov M, Muñóz V, Yumoto N, Yoshikawa S, Serrano L. Position dependence of non-polar amino acid intrinsic helical propensities. J Mol Biol 1998;278:279-289.
-
(1998)
J Mol Biol
, vol.278
, pp. 279-289
-
-
Petukhov, M.1
Muñóz, V.2
Yumoto, N.3
Yoshikawa, S.4
Serrano, L.5
-
18
-
-
0023731964
-
Amino acid side chain parameters for correlation studies in biology and pharmacology
-
Fauchere JL, Charton M, Kier LB, Verloop A, Pliska V. Amino acid side chain parameters for correlation studies in biology and pharmacology. Int J Pept Protein Res 1988;32:269-278.
-
(1988)
Int J Pept Protein Res
, vol.32
, pp. 269-278
-
-
Fauchere, J.L.1
Charton, M.2
Kier, L.B.3
Verloop, A.4
Pliska, V.5
-
19
-
-
0034613233
-
Crystal structure of human frataxin
-
Dhe-Paganon S, Shigeta R, Chi YI, Ristow M, Shoelson SE. Crystal structure of human frataxin. J Biol Chem 2000;275:30753-30756.
-
(2000)
J Biol Chem
, vol.275
, pp. 30753-30756
-
-
Dhe-Paganon, S.1
Shigeta, R.2
Chi, Y.I.3
Ristow, M.4
Shoelson, S.E.5
-
20
-
-
33747499542
-
Structure of the actuator domain from the Archaeoglobus fulgidus Cu(+)-ATPase
-
Sazinsky MH, Agarwal S, Arguello JM, Rosenzweig AC. Structure of the actuator domain from the Archaeoglobus fulgidus Cu(+)-ATPase. Biochemistry 2006;45:9949-9955.
-
(2006)
Biochemistry
, vol.45
, pp. 9949-9955
-
-
Sazinsky, M.H.1
Agarwal, S.2
Arguello, J.M.3
Rosenzweig, A.C.4
-
21
-
-
0028890190
-
Induced conformational states of amphipathic peptides in aqueous/lipid environments
-
Blondelle SE, Ostresh JM, Houghten RA, Perez-Paya E. Induced conformational states of amphipathic peptides in aqueous/lipid environments. Biophys J 1995;68:351-359.
-
(1995)
Biophys J
, vol.68
, pp. 351-359
-
-
Blondelle, S.E.1
Ostresh, J.M.2
Houghten, R.A.3
Perez-Paya, E.4
-
22
-
-
0014816360
-
Binding of dodecyl sulfate to proteins at high binding ratios. Possible implications for the state of proteins in biological membranes
-
Reynolds JA, Tanford C. Binding of dodecyl sulfate to proteins at high binding ratios. Possible implications for the state of proteins in biological membranes Proc Natl Acad Sci USA 1970;66:1002-1007.
-
(1970)
Proc Natl Acad Sci USA
, vol.66
, pp. 1002-1007
-
-
Reynolds, J.A.1
Tanford, C.2
-
23
-
-
0024417133
-
Temperature dependence of the vesicle-micelle transition of egg phosphatidylcholine and octyl glucoside
-
da Graca Miguel M, Eidelman O, Ollivon M, Walter A. Temperature dependence of the vesicle-micelle transition of egg phosphatidylcholine and octyl glucoside. Biochemistry 1989;28:8921-8928.
-
(1989)
Biochemistry
, vol.28
, pp. 8921-8928
-
-
da Graca Miguel, M.1
Eidelman, O.2
Ollivon, M.3
Walter, A.4
-
24
-
-
0000076410
-
Intramolecular donor-acceptor systems. radiative and nonradiative processes for the excited states of 2-N-arylamino-6-naphthalenesulfonates
-
Kosower EM, Dodiuk H, Tanizawa K, Ottolenghi M, Orbachl N. Intramolecular donor-acceptor systems. radiative and nonradiative processes for the excited states of 2-N-arylamino-6-naphthalenesulfonates. J Am Chem Soc 1975;97:2167-2177.
-
(1975)
J Am Chem Soc
, vol.97
, pp. 2167-2177
-
-
Kosower, E.M.1
Dodiuk, H.2
Tanizawa, K.3
Ottolenghi, M.4
Orbachl, N.5
-
25
-
-
0021095677
-
Intramolecular donor-acceptor systems. 10. Multiple fluorescences from 8-(phenylamino) 1 - naphthalenesulfonates
-
Kosower EM, Kanety H. Intramolecular donor-acceptor systems. 10. Multiple fluorescences from 8-(phenylamino) 1 - naphthalenesulfonates J Am Chem Soc 1983;105:6236-6246.
-
(1983)
J Am Chem Soc
, vol.105
, pp. 6236-6246
-
-
Kosower, E.M.1
Kanety, H.2
-
26
-
-
67749137430
-
Pathway for unfolding of ubiquitin in sodium dodecyl sulfate, studied by capillary electrophoresis
-
Schneider GF, Shaw BF, Lee A, Carillho E, Whitesides GM. Pathway for unfolding of ubiquitin in sodium dodecyl sulfate, studied by capillary electrophoresis. J Am Chem Soc 2008;130:17384-17393.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 17384-17393
-
-
Schneider, G.F.1
Shaw, B.F.2
Lee, A.3
Carillho, E.4
Whitesides, G.M.5
-
27
-
-
4644351191
-
Determination of protein charge by capillary zone electrophoresis
-
Winzor DJ, Jones S, Harding SE. Determination of protein charge by capillary zone electrophoresis. Anal Biochem 2004;333:225-229.
-
(2004)
Anal Biochem
, vol.333
, pp. 225-229
-
-
Winzor, D.J.1
Jones, S.2
Harding, S.E.3
-
28
-
-
0033554852
-
Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques
-
Wilkins DK, Grimshaw SB, Receveur V, Dobson CM, Jones JA, Smith LJ. Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques. Biochemistry 1999;38:16424-16431.
-
(1999)
Biochemistry
, vol.38
, pp. 16424-16431
-
-
Wilkins, D.K.1
Grimshaw, S.B.2
Receveur, V.3
Dobson, C.M.4
Jones, J.A.5
Smith, L.J.6
-
29
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
Van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ. GROMACS: fast, flexible, and free. J Comput Chem 2005;26:1701-1718.
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
30
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6
-
Oostenbrink C, Villa A, Mark AE, van Gunsteren WF. A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. J Comput Chem 2004;25:1656-1676.
-
(2004)
J Comput Chem
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
van Gunsteren, W.F.4
-
31
-
-
0030158429
-
PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
-
van Aalten DM, Bywater R, Findlay JB, Hendlich M, Hooft RW, Vriend G. PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules. J Comput Aided Mol Des 1996;10:255-262.
-
(1996)
J Comput Aided Mol Des
, vol.10
, pp. 255-262
-
-
van Aalten, D.M.1
Bywater, R.2
Findlay, J.B.3
Hendlich, M.4
Hooft, R.W.5
Vriend, G.6
-
32
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, Gunsteren WFv, DiNola A, Haak JR. Molecular dynamics with coupling to an external bath. J Chem Phys 1984;81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Gunsteren W.F.v3
DiNola, A.4
Haak, J.R.5
-
33
-
-
0025319619
-
Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution
-
Katti SK, LeMaster DM, Eklund H. Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution. J Mol Biol 1990;212: 167-184.
-
(1990)
J Mol Biol
, vol.212
, pp. 167-184
-
-
Katti, S.K.1
LeMaster, D.M.2
Eklund, H.3
-
36
-
-
17144417667
-
Detection of coexisting protein conformations in capillary zone electrophoresis subsequent to transient contact with sodium dodecyl sulfate solutions
-
Stutz H, Wallner M, Malissa H, Jr, Bordin G, Rodriguez AR. Detection of coexisting protein conformations in capillary zone electrophoresis subsequent to transient contact with sodium dodecyl sulfate solutions. Electrophoresis 2005;26:1089-1105.
-
(2005)
Electrophoresis
, vol.26
, pp. 1089-1105
-
-
Stutz, H.1
Wallner, M.2
Malissa H., Jr.3
Bordin, G.4
Rodriguez, A.R.5
-
37
-
-
75649097134
-
Intrinsic amino acid side-chain hydrophilicity/hydrophobicity coefficients determined by reversed-phase high-performance liquid chromatography of model peptides: comparison with other hydrophilicity/hydrophobicity scales
-
Mant CT, Kovacs JM, Kim HM, Pollock DD, Hodges RS. Intrinsic amino acid side-chain hydrophilicity/hydrophobicity coefficients determined by reversed-phase high-performance liquid chromatography of model peptides: comparison with other hydrophilicity/hydrophobicity scales. Biopolymers 2009;92:573-595.
-
(2009)
Biopolymers
, vol.92
, pp. 573-595
-
-
Mant, C.T.1
Kovacs, J.M.2
Kim, H.M.3
Pollock, D.D.4
Hodges, R.S.5
-
38
-
-
0033613815
-
Folding of amphipathic alpha-helices on membranes: energetics of helix formation by melittin
-
Ladokhin AS, White SH. Folding of amphipathic alpha-helices on membranes: energetics of helix formation by melittin. J Mol Biol 1999;285:1363-1369.
-
(1999)
J Mol Biol
, vol.285
, pp. 1363-1369
-
-
Ladokhin, A.S.1
White, S.H.2
-
39
-
-
0035970983
-
Role of helix formation for the retention of peptides in reversed-phase highperformance liquid chromatography
-
Wieprecht T, Rothemund S, Bienert M, Krause E. Role of helix formation for the retention of peptides in reversed-phase highperformance liquid chromatography. J Chromatogr A 2001;912:1-12.
-
(2001)
J Chromatogr A
, vol.912
, pp. 1-12
-
-
Wieprecht, T.1
Rothemund, S.2
Bienert, M.3
Krause, E.4
-
40
-
-
77952530173
-
Two new pimelic diphenylamide HDAC inhibitors induce sustained frataxin upregulation in cells from Friedreich's ataxia patients and in a mouse model
-
Rai M, Soragni E, Chou CJ, Barnes G, Jones S, Rusche JR, Gottesfeld JM, Pandolfo M. Two new pimelic diphenylamide HDAC inhibitors induce sustained frataxin upregulation in cells from Friedreich's ataxia patients and in a mouse model. PLoS One 2010;5:e8825.
-
(2010)
PLoS One
, vol.5
-
-
Rai, M.1
Soragni, E.2
Chou, C.J.3
Barnes, G.4
Jones, S.5
Rusche, J.R.6
Gottesfeld, J.M.7
Pandolfo, M.8
-
41
-
-
77349083921
-
Reversible unfolding of a thermophilic membrane protein in phospholipid/detergent mixed micelles
-
Roman EA, Arguello JM, Gonzalez Flecha FL. Reversible unfolding of a thermophilic membrane protein in phospholipid/detergent mixed micelles. J Mol Biol 2010;397:550-559.
-
(2010)
J Mol Biol
, vol.397
, pp. 550-559
-
-
Roman, E.A.1
Arguello, J.M.2
Gonzalez Flecha, F.L.3
-
42
-
-
0042120983
-
Temperature selectivity effects in reversed-phase liquid chromatography due to conformation differences between helical and non-helical peptides
-
Chen Y, Mant CT, Hodges RS. Temperature selectivity effects in reversed-phase liquid chromatography due to conformation differences between helical and non-helical peptides. J Chromatogr A 2003;1010:45-61.
-
(2003)
J Chromatogr A
, vol.1010
, pp. 45-61
-
-
Chen, Y.1
Mant, C.T.2
Hodges, R.S.3
-
43
-
-
63249121483
-
GroEL recognizes an amphipathic helix and binds to the hydrophobic side
-
Li Y, Gao X, Chen L. GroEL recognizes an amphipathic helix and binds to the hydrophobic side. J Biol Chem 2009;284:4324-4331.
-
(2009)
J Biol Chem
, vol.284
, pp. 4324-4331
-
-
Li, Y.1
Gao, X.2
Chen, L.3
-
44
-
-
1542293252
-
Influence of preformed alphahelix and alpha-helix induction on the activity of cationic antimicrobial peptides
-
Houston ME, Jr, Kondejewski LH, Karunaratne DN, Gough M, Fidai S, Hodges RS, Hancock RE. Influence of preformed alphahelix and alpha-helix induction on the activity of cationic antimicrobial peptides. J Pept Res 1998;52:81-88.
-
(1998)
J Pept Res
, vol.52
, pp. 81-88
-
-
Houston M.E., Jr.1
Kondejewski, L.H.2
Karunaratne, D.N.3
Gough, M.4
Fidai, S.5
Hodges, R.S.6
Hancock, R.E.7
-
45
-
-
69249171631
-
Interaction of 18-residue peptides derived from amphipathic helical segments of globular proteins with model membranes
-
Sivakamasundari C, Nagaraj R. Interaction of 18-residue peptides derived from amphipathic helical segments of globular proteins with model membranes. J Biosci 2009;34:239-250.
-
(2009)
J Biosci
, vol.34
, pp. 239-250
-
-
Sivakamasundari, C.1
Nagaraj, R.2
-
46
-
-
0032516445
-
Proline isomerization-independent accumulation of an early intermediate and heterogeneity of the folding pathways of a mixed alpha/beta protein
-
Georgescu RE, Li JH, Goldberg ME, Tasayco ML, Chaffotte AF. Proline isomerization-independent accumulation of an early intermediate and heterogeneity of the folding pathways of a mixed alpha/beta protein. Escherichia coli thioredoxin. Biochemistry 1998;37:10286-10297.
-
(1998)
Escherichia coli thioredoxin. Biochemistry
, vol.37
, pp. 10286-10297
-
-
Georgescu, R.E.1
Li, J.H.2
Goldberg, M.E.3
Tasayco, M.L.4
Chaffotte, A.F.5
-
47
-
-
0040951542
-
Interaction between two discontiguous chain segments from the beta-sheet of Escherichia coli thioredoxin suggests an initiation site for folding
-
Tasayco ML, Fuchs J, Yang XM, Dyalram D, Georgescu RE. Interaction between two discontiguous chain segments from the beta-sheet of Escherichia coli thioredoxin suggests an initiation site for folding. Biochemistry 2000;39:10613-10618.
-
(2000)
Biochemistry
, vol.39
, pp. 10613-10618
-
-
Tasayco, M.L.1
Fuchs, J.2
Yang, X.M.3
Dyalram, D.4
Georgescu, R.E.5
-
48
-
-
0042343673
-
Folding subdomains of thioredoxin characterized by native-state hydrogen exchange
-
Bhutani N, Udgaonkar JB. Folding subdomains of thioredoxin characterized by native-state hydrogen exchange. Protein Sci 2003;12: 1719-1731.
-
(2003)
Protein Sci
, vol.12
, pp. 1719-1731
-
-
Bhutani, N.1
Udgaonkar, J.B.2
|