Structure of Penaeus stylirostris densovirus, a shrimp pathogen

Journal of Virology

Volumn 84, Issue 21, 2010, Pages 11289-11296

  Kaufmann, Bärbel ^a   Bowman, Valorie D ^a   Li, Yi ^b,c   Szelei, Jozsef ^b   Waddell, Peter J ^a   Tijssen, Peter ^b   Rossmann, Michael G ^a  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITÉ LAVAL   (Canada)

^c CENTRAL CHINA NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; COAT PROTEIN; PHOSPHOLIPASE A2;

ARTICLE; CRYSTALLIZATION; HOST CELL; IMAGE RECONSTRUCTION; NONHUMAN; PARVOVIRUS; PATHOGENESIS; PENAEUS STYLIROSTRIS DENSOVIRUS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; SHRIMP; THREE DIMENSIONAL IMAGING; VIRUS INFECTION; VIRUS PARTICLE; X RAY CRYSTALLOGRAPHY; ANIMAL; CHEMISTRY; DENSOVIRINAE; PENAEIDAE; PROTEIN CONFORMATION; VIROLOGY;

BREVIDENSOVIRUS; DECAPODA (CRUSTACEA); DENSOVIRUS; GALLERIA MELLONELLA DENSOVIRUS; HEXAPODA; LITOPENAEUS STYLIROSTRIS; MIRIDAE; PARVOVIRUS; PENAEIDAE; VERTEBRATA;

ANIMALS; CAPSID PROTEINS; CRYSTALLOGRAPHY, X-RAY; DENSOVIRUS; PENAEIDAE; PROTEIN CONFORMATION;

EID: 77957940075     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01240-10     Document Type: Article

References (46)

1. Agbandje, M., R. McKenna, M. G. Rossmann, M. L. Strassheim, and C. R. Parrish. 1993. Structure determination of feline panleukopenia virus empty particles. Proteins 16:155-171.
2. Baker, T. S. 2004. RobEM - image processing and visualization program. http://cryoem.ucsd.edu/programDocs/runRobem.txt.
3. Bonami, J. R., B. Trumper, J. Mari, M. Brehelin, and D. V. Lightner. 1990. Purification and characterization of the infectious hypodermal and haematopoietic necrosis virus of penaeid shrimps. J. Gen. Virol. 71:2657-2664.
4. Bruemmer, A., F. Scholari, M. Lopez-Ferber, J. F. Conway, and E. A. Hewat. 2005. Structure of an insect parvovirus (Junonia coenia densovirus) determined by cryo-electron microscopy. J. Mol. Biol. 347:791-801.
5. Brünger, A. T. 2007. Version 1.2 of the Crystallography and NMR system. Nat. Protoc. 2:2728-2733.
6. Brünger, A. T., P. D. Adams, G. M. Clore, W. L. DeLano, P. Gros, R. W. Grosse-Kunstleve, J. S. Jiang, J. Kuszewski, M. Nilges, N. S. Pannu, R. J. Read, L. M. Rice, T. Simonson, and G. L. Warren. 1998. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54:905-921.
7. Canaan, S., Z. Zadori, F. Ghomashchi, J. Bollinger, M. Sadilek, M. E. Moreau, P. Tijssen, and M. H. Gelb. 2004. Interfacial enzymology of parvovirus phospholipases A2. J. Biol. Chem. 279:14502-14508.
8. Carlson, J., E. Suchman, and L. Buchatsky. 2006. Densoviruses for control and genetic manipulation of mosquitoes. Adv. Virus Res. 68:361-392.
9. Chen, S., L. Cheng, Q. Zhang, W. Lin, X. Lu, J. Brannan, Z. H. Zhou, and J. Zhang. 2004. Genetic, biochemical, and structural characterization of a new densovirus isolated from a chronically infected Aedes albopictus C6/36 cell line. Virology 318:123-133. (Pubitemid 38234267)
10. Emsley, P., and K. Cowtan. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 60:2126-2132.
11. Eventoff, W., M. L. Hackert, and M. G. Rossmann. 1975. A low-resolution crystallographic study of porcine heart lactate dehydrogenase. J. Mol. Biol. 98:249-258.
12. Farr, G. A., L. G. Zhang, and P. Tattersall. 2005. Parvoviral virions deploy a capsid-tethered lipolytic enzyme to breach the endosomal membrane during cell entry. Proc. Natl. Acad. Sci. U. S. A. 102:17148-17153.
13. Girod, A., C. E. Wobus, Z. Zadori, M. Ried, K. Leike, P. Tijssen, J. A. Kleinschmidt, and M. Hallek. 2002. The VP1 capsid protein of adeno-associated virus type 2 is carrying a phospholipase A2 domain required for virus infectivity. J. Gen. Virol. 83:973-978.
14. Harvell, C. D., K. Kim, J. M. Burkholder, R. R. Colwell, P. R. Epstein, D. J. Grimes, E. E. Hofmann, E. K. Lipp, A. D. Osterhaus, R. M. Overstreet, J. W. Porter, G. W. Smith, and G. R. Vasta. 1999. Emerging marine diseases - climate links and anthropogenic factors. Science 285:1505-1510.
15. Hou, L., H. Wu, L. Xu, and F. Yang. 2009. Expression and self-assembly of virus-like particles of infectious hypodermal and hematopoietic necrosis virus in Escherichia coli. Arch. Virol. 154:547-553.
16. Johnson, K. N., M. C. van Hulten, and A. C. Barnes. 2008. "Vaccination" of shrimp against viral pathogens: phenomenology and underlying mechanisms. Vaccine 26:4885-4892.
17. Kabsch, W., and C. Sander. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637.
18. Kaufmann, B., A. A. Simpson, and M. G. Rossmann. 2004. The structure of human parvovirus B19. Proc. Natl. Acad. Sci. U. S. A. 101:11628-11633.
19. Laskowski, R. A., M. W. MacArthur, D. S. Moss, and J. M. Thornton. 1993. Procheck - a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
20. Li, Y., Z. Zadori, H. Bando, R. Dubuc, G. Fediere, J. Szelei, and P. Tijssen. 2001. Genome organization of the densovirus from Bombyx mori (BmDNV-1) and enzyme activity of its capsid. J. Gen. Virol. 82:2821-2825.
21. Li, Z., J. He, X. Huang, A. Dai, L. Cheng, D. Shao, and J. Zhang. 2008. The truncated virus-like particles of C6/36 cell densovirus: implications for the assembly mechanism of brevidensovirus. Virus Res. 132:248-252.
22. Lightner, D. V., R. M. Redman, and T. A. Bell. 1983. Infectious hypodermal and hematopoietic necrosis, a newly recognized virus disease of penaeid shrimp. J. Invertebr. Pathol. 42:62-70.
23. Llamas-Saiz, A. L., M. Agbandje-McKenna, W. R. Wikoff, J. Bratton, P. Tattersall, and M. G. Rossmann. 1997. Structure determination of minute virus of mice. Acta Crystallogr. D Biol. Crystallogr. 53:93-102.
24. Lombardo, E., J. C. Ramirez, M. Agbandje-McKenna, and J. M. Almendral. 2000. A beta-stranded motif drives capsid protein oligomers of the parvovirus minute virus of mice into the nucleus for viral assembly. J. Virol. 74: 3804-3814.
25. Ludtke, S. J., P. R. Baldwin, and W. Chiu. 1999. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128:82-97.
26. Manolova, V., A. Flace, M. Bauer, K. Schwarz, P. Saudan, and M. F. Bachmann. 2008. Nanoparticles target distinct dendritic cell populations according to their size. Eur. J. Immunol. 38:1404-1413.
27. Navaza, J. 1994. Amore - an automated package for molecular replacement. Acta Crystallogr. A 50:157-163.
28. Otwinowski, Z., W. Minor, and W. C. Charles. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:307-326.
29. Pettersen, E. F., T. D. Goddard, C. C. Huang, G. S. Couch, D. M. Greenblatt, E. C. Meng, and T. E. Ferrin. 2004. UCSF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 25:1605-1612.
30. Ren, X., E. Hoiczyk, and J. L. Rasgon. 2008. Viral paratransgenesis in the malaria vector Anopheles gambiae. PLoS Pathog. 4:e1000135.
31. Riolobos, L., J. Reguera, M. G. Mateu, and J. M. Almendral. 2006. Nuclear transport of trimeric assembly intermediates exerts a morphogenetic control on the icosahedral parvovirus capsid. J. Mol. Biol. 357:1026-1038.
32. Rollinger, J. M., and M. Schmidtke. 27 August 2009. The human rhinovirus: human-pathological impact, mechanisms of antirhinoviral agents, and strategies for their discovery. Med. Res. Rev. doi:10.1002/med.20176. [Epub ahead of print.]
33. Rossmann, M. G., and J. E. Johnson. 1989. Icosahedral RNA virus structure. Annu. Rev. Biochem. 58:533-573.
34. Rossmann, M. G., R. McKenna, L. Tong, D. Xia, J. B. Dai, H. Wu, H. K. Choi, and R. E. Lynch. 1992. Molecular replacement real-space averaging. J. Appl. Crystallogr. 25:166-180.
35. Shike, H., A. K. Dhar, J. C. Burns, C. Shimizu, F. X. Jousset, K. R. Klimpel, and M. Bergoin. 2000. Infectious hypodermal and hematopoietic necrosis virus of shrimp is related to mosquito brevidensoviruses. Virology 277:167-177.
36. Simpson, A. A., P. R. Chipman, T. S. Baker, P. Tijssen, and M. G. Rossmann. 1998. The structure of an insect parvovirus (Galleria mellonella densovirus) at 3.7 Å resolution. Structure 6:1355-1367.
37. Simpson, A. A., B. Hebert, G. M. Sullivan, C. R. Parrish, Z. Zadori, P. Tijssen, and M. G. Rossmann. 2002. The structure of porcine parvovirus: comparison with related viruses. J. Mol. Biol. 315:1189-1198.
38. Swofford, D. L., P. J. Waddell, J. P. Huelsenbeck, P. G. Foster, P. O. Lewis, and J. S. Rogers. 2001. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst. Biol. 50:525-539.
39. Tong, L. A., and M. G. Rossmann. 1990. The locked rotation function. Acta Crystallogr. A 46:783-792.
40. Trapani, S., and J. Navaza. 2008. AMoRe: classical and modern. Acta Crystallogr. D Biol. Crystallogr. 64:11-16.
41. Tsao, J., M. S. Chapman, M. Agbandje, W. Keller, K. Smith, H. Wu, M. Luo, T. J. Smith, M. G. Rossmann, R. W. Compans, and C. R. Parrish. 1991. The three-dimensional structure of canine parvovirus and its functional implications. Science 251:1456-1464.
42. Witteveldt, J., J. M. Vlak, and M. C. van Hulten. 2006. Increased tolerance of Litopenaeus vannamei to white spot syndrome virus (WSSV) infection after oral application of the viral envelope protein VP28. Dis. Aquat. Organ. 70:167-170.
43. Xie, Q., W. Bu, S. Bhatia, J. Hare, T. Somasundaram, A. Azzi, and M. S. Chapman. 2002. The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy. Proc. Natl. Acad. Sci. U. S. A. 99:10405-10410.
44. Xie, Q., and M. S. Chapman. 1996. Canine parvovirus capsid structure, analyzed at 2.9 Å resolution. J. Mol. Biol. 264:497-520.
45. Yan, X., R. S. Sinkovits, and T. S. Baker. 2007. AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles. J. Struct. Biol. 157:73-82.
46. Zadori, Z., J. Szelei, M. C. Lacoste, Y. Li, S. Gariepy, P. Raymond, M. Allaire, I. R. Nabi, and P. Tijssen. 2001. A viral phospholipase A2 is required for parvovirus infectivity. Dev. Cell 1:291-302.