Meta P-server: A web-based metabolomics data analysis tool

Journal of Biomedicine and Biotechnology

Volumn 2011, Issue , 2011, Pages

  Suhre, Karsten ^a,c   Kastenmüller, Gabi ^a   Römisch Margl, Werner ^a   Wägele, Brigitte ^a,b   Altmaier, Elisabeth ^a  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^c UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA ANALYSIS SOFTWARE; DATA EXTRACTION; METABOLOMICS; PHENOTYPE; QUANTITATIVE ANALYSIS; WEB BROWSER; ANIMAL; DATA BASE; FACTUAL DATABASE; HUMAN; INTERNET; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY;

ANIMALS; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; HUMANS; INTERNET; METABOLOMICS; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS;

EID: 77957869474     PISSN: 11107243     EISSN: 11107251     Source Type: Journal    
DOI: 10.1155/2011/839862     Document Type: Article

References (20)

1. Nicholson J. K., Connelly J., Lindon J. C., Holmes E., Metabonomics: a platform for studying drug toxicity and gene function Nature Reviews Drug Discovery 2002 1 2 153 161 (Pubitemid 41646523)
2. Fiehn O., Metabolomicsthe link between genotypes and phenotypes Plant Molecular Biology 2002 48 1-2 155 171
3. Bino R. J., Hall R. D., Fiehn O., Kopka J., Saito K., Draper J., Nikolau B. J., Mendes P., Roessner-Tunali U., Beale M. H., Trethewey R. N., Lange B. M., Wurtele E. S., Sumner L. W., Potential of metabolomics as a functional genomics tool Trends in Plant Science 2004 9 9 418 425 (Pubitemid 39160937)
4. Hirai M. Y., Yano M., Goodenowe D. B., Kanaya S., Kimura T., Awazuhara M., Arita M., Fujiwara T., Saito K., Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana Proceedings of the National Academy of Sciences of the United States of America 2004 101 27 10205 10210 (Pubitemid 38891220)
5. Altmaier E., Ramsay S. L., Graber A., Mewes H.-W., Weinberger K. M., Suhre K., Bioinformatics analysis of targeted metabolomicsuncovering old and new tales of diabetic mice under medication Endocrinology 2008 149 7 3478 3489 (Pubitemid 351919596)
6. Altmaier E., Kastenmller G., Rmisch-Margl W., Thorand B., Weinberger K. M., Adamski J., Illig T., Dring A., Suhre K., Variation in the human lipidome associated with coffee consumption as revealed by quantitative targeted metabolomics Molecular Nutrition and Food Research 2009 53 11 1357 1365
7. Gieger C., Geistlinger L., Altmaier E., Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum PLoS Genet 2008 4 11
8. Illig T., Gieger C., Zhai G., A genome-wide perspective of genetic variation in human metabolism Nature Genetics 2010 42 2 137 141
9. Sreekumar A., Poisson L. M., Rajendiran T. M., Khan A. P., Cao Q., Yu J., Laxman B., Mehra R., Lonigro R. J., Li Y., Nyati M. K., Ahsan A., Kalyana-Sundaram S., Han B., Cao X., Byun J., Omenn G. S., Ghosh D., Pennathur S., Alexander D. C., Berger A., Shuster J. R., Wei J. T., Varambally S., Beecher C., Chinnaiyan A. M., Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression Nature 2009 457 7231 910 914
10. Wood P. L., Mankidy R., Ritchie S., Circulating plasmalogen levels and Alzheimer disease assessment scale-cognitive scores in Alzheimer patients Journal of Psychiatry Neuroscience 2010 35 1 59 62
11. Shearer J., Duggan G., Weljie A., Hittel D. S., Wasserman D. H., Vogel H. J., Metabolomic profiling of dietary-induced insulin resistance in the high fat-fed C57BL/6J mouse Diabetes, Obesity and Metabolism 2008 10 10 950 958
12. Katajamaa M., Miettinen J., Orei M., MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data Bioinformatics 2006 22 5 634 636 (Pubitemid 43372832)
13. Suhre K., Schmitt-Kopplin P., MassTRIX: mass translator into pathways Nucleic Acids Research 2008 36, Web Server issue W481 W484
14. Xia J., Bjorndahl T. C., Tang P., Wishart D. S., MetaboMinersemi- automated identification of metabolites from 2D NMR spectra of complex biofluids BMC Bioinformatics 2008 9, article 507
15. Xia J., Psychogios N., Young N., Wishart D. S., MetaboAnalyst: a web server for metabolomic data analysis and interpretation Nucleic Acids Research 2009 37, Web Server issue W652 W660
16. Neuweger H., Albaum S. P., Dondrup M., Persicke M., Watt T., Niehaus K., Stoye J., Goesmann A., MeltDB: a software platform for the analysis and integration of metabolomics experiment data Bioinformatics 2008 24 23 2726 2732 (Pubitemid 352722615)
17. Wishart D. S., Knox C., Guo A. C., Eisner R., Young N., Gautam B., Hau D. D., Psychogios N., Dong E., Bouatra S., Mandal R., Sinelnikov I., Xia J., Jia L., Cruz J. A., Lim E., Sobsey C. A., Shrivastava S., Huang P., Liu P., Fang L., Peng J., Fradette R., Cheng D., Tzur D., Clements M., Lewis A., de souza A., Zuniga A., Dawe M., Xiong Y., Clive D., Greiner R., Nazyrova A., Shaykhutdinov R., Li L., Vogel H. J., Forsythei I., HMDB: a knowledgebase for the human metabolome Nucleic Acids Research 2009 37, Database issue D603 D610
18. Sud M., Fahy E., Cotter D., Brown A., Dennis E. A., Glass C. K., Merrill A. H. Jr., Murphy R. C., Raetz C. R. H., Russell D. W., Subramaniam S., LMSD: LIPID MAPS structure database Nucleic Acids Research 2007 35, Database issue D527 D532 (Pubitemid 46056264)
19. Kanehisa M., Goto S., Furumichi M., Tanabe M., Hirakawa M., KEGG forrepresentation and analysis of molecular networks involving diseases and drugs Nucleic Acids Research 2010 38, Database issue D355 D360
20. Wang Y., Xiao J., Suzek T. O., Zhang J., Wang J., Bryant S. H., PubChem: a public information system for analyzing bioactivities of small molecules Nucleic Acids Research 2009 37, Web Server issue W623 W633