Specificity of DNA sequences recognized by the zinc-finger homeodomain protein, GmZF-HD1 in soybean

Phytochemistry

Volumn 71, Issue 16, 2010, Pages 1832-1838

  Park, Hyeong Cheol ^a   Kim, Man Lyang ^a,b   Kim, Ho Soo ^a   Park, Jung Hoon ^a   Jung, Mi Soon ^a   Shen, Mingzhe ^a   Kang, Chang Ho ^a   Kim, Min Chul ^a   Lee, Sang Yeol ^a   Cho, Moo Je ^a   Chung, Woo Sik ^a   Yun, Dae Jin ^a  

^a Gyeongsang National University   (South Korea)

^b UNIVERSITY OF BASEL   (Switzerland)

Author keywords

Calmodulin; Cis element; Fabaceae; GmZF HD1; Plant defense response; Soybean (Glycine max); Transcription factor

Indexed keywords

CALMODULIN; DNA BINDING PROTEIN; HOMEODOMAIN PROTEIN; ISOPROTEIN; SOYBEAN PROTEIN; TRANSCRIPTION FACTOR; ZINC FINGER PROTEIN;

ARTICLE; CHEMISTRY; GENETICS; METABOLISM; NUCLEOTIDE SEQUENCE; SOYBEAN;

BASE SEQUENCE; CALMODULIN; DNA-BINDING PROTEINS; HOMEODOMAIN PROTEINS; PROTEIN ISOFORMS; SOYBEAN PROTEINS; SOYBEANS; TRANSCRIPTION FACTORS; ZINC FINGERS;

FABACEAE; GLYCINE MAX;

EID: 77957843769     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2010.07.010     Document Type: Article

References (39)

1. S. Abel, and A. Theologis Transient transformation of Arabidopsis leaf protoplast: a versatile experimental system to study gene expression Plant J. 5 1994 421 427 (Pubitemid 124000375)
2. S. Balasubramanian, and K. Schneitz NOZZLE links proximal-distal and adaxial-abaxial pattern formation during ovule development in Arabidopsis thaliana Development 129 2002 4291 4300
3. T.R. Burglin A comprehensive classification of homeobox genes D. Duboule, Guidebook to the Homeobox Genes 1994 Oxford University Press New York 27 71
4. W. Chen, N.J. Provart, J. Glazebrook, F. Katagiri, H.S. Chang, T. Eulgem, F. Mauch, S. Luan, G. Zou, S.A. Whitham, P.R. Budworth, Y. Tao, Z. Xie, X. Chen, S. Lam, J.A. Kreps, J.F. Harper, A. Si-Ammour, B. Mauch-Mani, M. Heinlein, K. Kobayashi, T. Hohn, J.L. Dangl, X. Wang, and T. Zhu Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses Plant Cell 14 2002 559 574 (Pubitemid 34305625)
5. A. Coego, V. Ramirez, M.J. Gil, V. Flors, B. Mauch-Mani, and P. Vera An Arabidposis homeodomain transcription factor, OVEREXPRESSOR OF CATIONIC PEROXIDASE 3, mediates resistance to infection by necrotrophic pathogens Plant Cell 17 2005 2123 2137
6. I.G. Cowell Repression versus activation in the control of gene transcription Trends Biochem. Sci. 19 1994 38 42 (Pubitemid 24028730)
7. S.L. Dellaporta, J. Wood, and J.B. Hicks A plant DNA minipreparation: version II Plant Mol. Biol. Rep. 1 1983 19 21
8. J. Glazebrook Genes controlling expression of defense responses in Arabidopsis - 2001 status Curr. Opin. Plant Biol. 4 2001 301 308 (Pubitemid 32620712)
9. J. Hackbusch, K. Richter, J. Muller, F. Salamini, and J.F. Uhrig A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins Proc. Natl. Acad. Sci. USA 102 2005 4908 4912 (Pubitemid 40471552)
10. W.D. Heo, S.H. Lee, M.C. Kim, J.C. Kim, W.S. Chung, H.J. Chun, K.J. Lee, C.Y. Park, H.C. Park, J.Y. Choi, and M.J. Cho Involvement of specific calmodulin isoforms in salicylic acid-independent activation of plant disease resistance responses Proc. Natl. Acad. Sci. USA 96 1999 766 771
11. A. Himmelbach, T. Hoffmann, M. Leube, B. Hohener, and E. Grill Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis EMBO J. 21 2002 3029 3038 (Pubitemid 34670387)
12. J.C. Hong, Y.H. Cheong, R.T. Nagao, J.D. Bahk, J.L. Key, and M.J. Cho Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene Plant J. 8 1995 199 211
13. W. Hu, C.W. dePamphilis, and H. Ma Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families J. Integ. Plant Biol. 50 2008 1031 1045
14. J.Y. Kim, Y. Rim, J. Wang, and D. Jackson A novel cell-to-cell trafficking assay indicates that the KNOX homeodomain is necessary and sufficient for intercellular protein and mRNA trafficking Genes Dev. 19 2005 788 793 (Pubitemid 40502981)
15. E.O. King, M.K. Ward, and D.E. Raney Two simple media for the demonstration of phycocyanin and fluorescin J. Lab. Clin. 44 1954 301 307
16. H. Knight, and M.R. Knight Abiotic stress signaling pathways: specificity and cross-talk Trends Plant Sci. 6 2001 262 267
17. S.H. Lee, J.C. Kim, M.S. Lee, W.D. Heo, H.Y. Seo, H.W. Yoon, J.C. Hong, S.Y. Lee, J.D. Bahk, I. Hwang, and M.J. Cho Identification of a novel divergent calmodulin isoform from soybean which has different ability to activate calmodulin-dependent enzymes J. Biol. Chem. 270 1995 21806 21812
18. L. Meisel, and E. Lam Switching on gene expression: analysis of the factors that spatially and temporally regulate plant gene expression Genet. Eng. 19 1997 183 199
19. R.T. Nagao, V.H. Goekjian, J.C. Hong, and J.L. Key Identification of protein-binding DNA sequences in an auxin-regulated gene of soybean Plant Mol. Biol. 21 1993 1147 1162
20. H.C. Park, M.L. Kim, Y.H. Kang, J.M. Jeon, J.H. Yoo, M.C. Kim, C.Y. Park, J.C. Jeong, B.C. Moon, J.H. Lee, H.W. Yoon, S.-H. Lee, W.S. Chung, C.O. Lim, S.Y. Lee, J.C. Hong, and M.J. Cho Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor Plant Physiol. 135 2004 2150 2161
21. H.C. Park, M.L. Kim, S.M. Lee, J.D. Bahk, D.-J. Yun, C.O. Lim, J.C. Hong, S.Y. Lee, M.J. Cho, and W.S. Chung Pathogen-induced binding of the soybean zinc finger homeodomain proteins GmZF-HD1 and GmZF-HD2 to two repeats of ATTA homeodomain binding site in the calmodulin isoform 4 (GmCaM4) promoter Nucleic Acids Res. 35 2007 3612 3623
22. H.C. Park, M.L. Kim, Y.H. Kang, J.C. Jeong, M.S. Cheong, W. Choi, S.Y. Lee, M.J. Cho, M.C. Kim, W.S. Chung, and D.-J. Yun Functional analysis of the stress-inducible soybean calmodulin isoform-4 (GmCaM-4) promoter in transgenic tobacco plants Mol. Cells 27 2009 475 480
23. G. Plesch, K. Stormann, J.T. Torres, R. Walden, and I.E. Somssich Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene Plant J. 12 1997 635 647 (Pubitemid 27434042)
24. V.K. Rajasekhar, C. Lamb, and R.A. Dixon Early events in the signal pathway for the oxidative burst in soybean cells exposed to avirulent Pseudomonas syringae pv glycinea Plant Physiol. 120 1999 1137 1146 (Pubitemid 29411901)
25. J.L. Riechmann, J. Heard, G. Martin, L. Reuber, C.-Z. Jiang, J. Keddie, L. Adam, O. Pineda, O.J. Ratcliffe, R.R. Samaha, R. Creelman, M. Pilgrim, P. Broun, J.Z. Zhang, D. Ghandehari, B.K. Sherman, and G.-L. Yu Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes Science 290 2000 2105 2110 (Pubitemid 32001583)
26. Schrick, K., Nguyen, D., Karlowski, W.M., Mayer, K.F.X., 2004. START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeo domain transcription factors. Genome Biol. 5, R41.1-R41.16.
27. C. Schwechheimer, and M. Bevan The regulation of transcription factor activity in plants Trends Plant Sci. 3 1998 378 383 (Pubitemid 28472063)
28. K.B. Singh, R.C. Foley, and L. Oñate-Sánchez Transcription factors in plant defense and stress responses Curr. Opin. Plant Biol. 5 2002 430 436 (Pubitemid 34961406)
29. H.M. Smith, B.C. Campbell, and S. Hake Competence to respond to floral inductive signals requires the homeobox genes PENNYWISE and POUND-FOOLISH Curr. Biol. 14 2004 812 817 (Pubitemid 38583718)
30. W.A. Snedden, and H. Fromm Calmodulin as a versatile calcium signal transducer in plants New Phytol. 151 2001 35 66 (Pubitemid 32620639)
31. Q.K.-G. Tan, and V.F. Irish The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development Plant Physiol. 140 2006 1095 1108
32. L.S. Tran, K. Nakashima, Y. Sakuma, Y. Osakabe, F. Qin, S.D. Simpson, K. Maruyama, Y. Fujita, K. Shinozaki, and K. Yamaguchi-Shinozaki Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis Plant J. 49 2006 46 63 (Pubitemid 44952697)
33. S.C. Tucker, and R. Wisdom Site-specific heterodimerization by paired class homeodomain proteins mediates selective transcriptional responses J. Biol. Chem. 274 1999 32325 32332 (Pubitemid 129503833)
34. A. Veraksa, M. Del Campo, and W. McGinnis Developmental patterning genes and their conserved functions: from model organisms to humans Mol. Genet. Metab. 69 2000 85 100 (Pubitemid 30180692)
35. 4 phosphoenolpyruvate carboxylase gene of Flaveria trinervia Plant Mol. Biol. 45 2001 201 214 (Pubitemid 32228605)
36. C. Wolberger Homeodomain interactions Curr. Opin. Struct. Biol. 6 1996 62 68 (Pubitemid 26073945)
37. H. Yamakawa, I. Mitsuhara, N. Ito, S. Seo, H. Kamada, and Y. Ohashi Transcriptionally and post-transcriptionally regulated response of 13 calmodulin genes to tobacco mosaic virus-induced cell death and wounding in tobacco plant Eur. J. Biochem. 268 2001 3916 3929 (Pubitemid 32868603)
38. J.H. Yoo, C.Y. Park, J.C. Kim, W.D. Heo, M.S. Cheong, H.C. Park, M.C. Kim, B.C. Moon, M.S. Choi, Y.H. Kang, J.H. Lee, H.S. Kim, S.M. Lee, H.W. Yoon, C.O. Lim, D.-J. Yun, S.Y. Lee, W.S. Chung, and M.J. Cho Direct interaction of a divergent CaM isoform and the transcription factor, MYB2, enhances salt tolerance in Arabidopsis J. Biol. Chem. 280 2005 3697 3706
39. J. Zhu, H. Shi, B.H. Lee, B. Damsz, S. Cheng, V. Stirm, J.-K. Zhu, M.P. Hasegawa, and R.A. Bressan An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway Proc. Natl. Acad. Sci. USA 101 2004 9873 9878 (Pubitemid 38869329)