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Volumn 11, Issue SUPPL. 6, 2010, Pages

Promoter prediction in E. coli based on SIDD profiles and Artificial Neural Networks

Author keywords

[No Author keywords available]

Indexed keywords

ANN CLASSIFIERS; ENERGY THRESHOLD METHOD; PREDICTION METHODS; PROMOTER PREDICTION; PROMOTER REGION; STACKING ENERGY; THRESHOLD APPROACH; TRADITIONAL APPROACHES;

EID: 77957696401     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-17     Document Type: Article
Times cited : (16)

References (10)
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    • (1996) Methods Enzymol , vol.273 , pp. 30-42
    • Hertz, G.Z.1    Stormo, G.D.2
  • 2
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    • Sigma 70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals.
    • 10.1016/j.jmb.2003.07.017, 14529615
    • Huerta AM, Collado-Vides J. Sigma 70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. J Mol Biol 2003, 333:261-278. 10.1016/j.jmb.2003.07.017, 14529615.
    • (2003) J Mol Biol , vol.333 , pp. 261-278
    • Huerta, A.M.1    Collado-Vides, J.2
  • 3
    • 20344396385 scopus 로고    scopus 로고
    • Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes
    • Pacific Symposium on Biocomputing, 6:103-114, 10.1093/nar/gki627, 1143579, 15939933
    • Kanhere A, Bansal M. Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes. Nucleic Acids Research 2005, 33:3165-3175. Pacific Symposium on Biocomputing, 6:103-114, 10.1093/nar/gki627, 1143579, 15939933.
    • (2005) Nucleic Acids Research , vol.33 , pp. 3165-3175
    • Kanhere, A.1    Bansal, M.2
  • 4
    • 33646853178 scopus 로고    scopus 로고
    • Involvement of DNA curvature in intergenic regions of prokaryotes.
    • 10.1093/nar/gkl230, 1458280, 16679450
    • Kozobay-Avraham L, Hosid S, Bolshoy A. Involvement of DNA curvature in intergenic regions of prokaryotes. Nucleic Acids Research 2006, 34:2316-2327. 10.1093/nar/gkl230, 1458280, 16679450.
    • (2006) Nucleic Acids Research , vol.34 , pp. 2316-2327
    • Kozobay-Avraham, L.1    Hosid, S.2    Bolshoy, A.3
  • 5
    • 72949097205 scopus 로고    scopus 로고
    • Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition.
    • 10.1039/b906535k, 19593472
    • Rangannan V, Bansal M. Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition. Mol Biosyst 2009, 5:1758-1769. 10.1039/b906535k, 19593472.
    • (2009) Mol Biosyst , vol.5 , pp. 1758-1769
    • Rangannan, V.1    Bansal, M.2
  • 6
    • 4444337094 scopus 로고    scopus 로고
    • Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters.
    • 10.1101/gr.2080004, 509266, 15289476
    • Wang H, Noordewier M, Benham CJ. Stress-induced DNA duplex destabilization (SIDD) in the E. coli genome: SIDD sites are closely associated with promoters. Genome Res 2004, 14:1575-1584. 10.1101/gr.2080004, 509266, 15289476.
    • (2004) Genome Res , vol.14 , pp. 1575-1584
    • Wang, H.1    Noordewier, M.2    Benham, C.J.3
  • 7
    • 33646867391 scopus 로고    scopus 로고
    • Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.
    • 10.1186/1471-2105-7-248, 1468432, 16677393
    • Wang H, Benham CJ. Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress. BMC Bioinformatics 2006, 7:248. 10.1186/1471-2105-7-248, 1468432, 16677393.
    • (2006) BMC Bioinformatics , vol.7 , pp. 248
    • Wang, H.1    Benham, C.J.2
  • 8
    • 84874663610 scopus 로고    scopus 로고
    • Weka Data Mining
    • Weka Data Mining. , http://www.cs.waikato.ac.nz/ml/weka/
  • 9
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    • RequlonDB promoters
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    • Tiberius Data Mining
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.