-
1
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Luhrmann R. The spliceosome: Design principles of a dynamic RNP machine. Cell 2009; 136:701-18.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
2
-
-
75849145292
-
Expansion of the eukaryotic proteome by alternative splicing
-
Nilsen TW, Graveley BR. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010; 463:457-63.
-
(2010)
Nature
, vol.463
, pp. 457-463
-
-
Nilsen, T.W.1
Graveley, B.R.2
-
3
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003; 72:291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
4
-
-
12344250822
-
Function of alternative splicing
-
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, et al. Function of alternative splicing. Gene 2005; 344:1-20.
-
(2005)
Gene
, vol.344
, pp. 1-20
-
-
Stamm, S.1
Ben-Ari, S.2
Rafalska, I.3
Tang, Y.4
Zhang, Z.5
Toiber, D.6
-
5
-
-
33947305594
-
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay
-
Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, O'Brien G, et al. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev 2007; 21:708-18.
-
(2007)
Genes Dev
, vol.21
, pp. 708-718
-
-
Ni, J.Z.1
Grate, L.2
Donohue, J.P.3
Preston, C.4
Nobida, N.5
O'Brien, G.6
-
6
-
-
42449124624
-
The coupling of alternative splicing and nonsensemediated mRNA decay
-
Lareau LF, Brooks AN, Soergel DA, Meng Q, Brenner SE. The coupling of alternative splicing and nonsensemediated mRNA decay. Adv Exp Med Biol 2007; 623:190-211.
-
(2007)
Adv Exp Med Biol
, vol.623
, pp. 190-211
-
-
Lareau, L.F.1
Brooks, A.N.2
Soergel, D.A.3
Meng, Q.4
Brenner, S.E.5
-
7
-
-
0346124413
-
Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay
-
Wollerton MC, Gooding C, Wagner EJ, Garcia-Blanco MA, Smith CW. Autoregulation of polypyrimidine tract binding protein by alternative splicing leading to nonsense-mediated decay. Mol Cell 2004; 13:91-100.
-
(2004)
Mol Cell
, vol.13
, pp. 91-100
-
-
Wollerton, M.C.1
Gooding, C.2
Wagner, E.J.3
Garcia-Blanco, M.A.4
Smith, C.W.5
-
8
-
-
75149194407
-
Autoregulation of Fox protein expression to produce dominant negative splicing factors
-
Damianov A, Black DL. Autoregulation of Fox protein expression to produce dominant negative splicing factors. RNA 2010; 16:405-16.
-
(2010)
RNA
, vol.16
, pp. 405-416
-
-
Damianov, A.1
Black, D.L.2
-
9
-
-
0027969151
-
A nuclear cap binding protein complex involved in pre-mRNA splicing
-
Izaurralde E, Lewis J, McGuigan C, Jankowska M, Darzynkiewicz E, Mattaj IW. A nuclear cap binding protein complex involved in pre-mRNA splicing. Cell 1994; 78:657-68.
-
(1994)
Cell
, vol.78
, pp. 657-668
-
-
Izaurralde, E.1
Lewis, J.2
McGuigan, C.3
Jankowska, M.4
Darzynkiewicz, E.5
Mattaj, I.W.6
-
10
-
-
0030711724
-
Participation of the nuclear cap binding complex in pre-mRNA 3' processing
-
Flaherty SM, Fortes P, Izaurralde E, Mattaj IW, Gilmartin GM. Participation of the nuclear cap binding complex in pre-mRNA 3' processing. Proc Natl Acad Sci USA 1997; 94:11893-8.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 11893-11898
-
-
Flaherty, S.M.1
Fortes, P.2
Izaurralde, E.3
Mattaj, I.W.4
Gilmartin, G.M.5
-
11
-
-
34247552158
-
NELF interacts with CBC and participates in 3' end processing of replication-dependent histone mRNAs
-
Narita T, Yung TM, Yamamoto J, Tsuboi Y, Tanabe H, Tanaka K, et al. NELF interacts with CBC and participates in 3' end processing of replication-dependent histone mRNAs. Mol Cell 2007; 26:349-65.
-
(2007)
Mol Cell
, vol.26
, pp. 349-365
-
-
Narita, T.1
Yung, T.M.2
Yamamoto, J.3
Tsuboi, Y.4
Tanabe, H.5
Tanaka, K.6
-
12
-
-
27144478105
-
CBP80 promotes interaction of Upf1 with Upf2 during nonsense- mediated mRNA decay in mammalian cells
-
Hosoda N, Kim YK, Lejeune F, Maquat LE. CBP80 promotes interaction of Upf1 with Upf2 during nonsense- mediated mRNA decay in mammalian cells. Nat Struct Mol Biol 2005; 12:893-901.
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 893-901
-
-
Hosoda, N.1
Kim, Y.K.2
Lejeune, F.3
Maquat, L.E.4
-
13
-
-
0036645697
-
The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: Dynamics of mRNP remodeling
-
Lejeune F, Ishigaki Y, Li X, Maquat LE. The exon junction complex is detected on CBP80-bound but not eIF4E-bound mRNA in mammalian cells: Dynamics of mRNP remodeling. EMBO J 2002; 21:3536-45.
-
(2002)
EMBO J
, vol.21
, pp. 3536-3545
-
-
Lejeune, F.1
Ishigaki, Y.2
Li, X.3
Maquat, L.E.4
-
14
-
-
0028983915
-
A cap-binding protein complex mediating U snRNA export
-
Izaurralde E, Lewis J, Gamberi C, Jarmolowski A, McGuigan C, Mattaj IW. A cap-binding protein complex mediating U snRNA export. Nature 1995; 376:709-12.
-
(1995)
Nature
, vol.376
, pp. 709-712
-
-
Izaurralde, E.1
Lewis, J.2
Gamberi, C.3
Jarmolowski, A.4
McGuigan, C.5
Mattaj, I.W.6
-
15
-
-
33845626622
-
Human mRNA export machinery recruited to the 5' end of mRNA
-
Cheng H, Dufu K, Lee CS, Hsu JL, Dias A, Reed R. Human mRNA export machinery recruited to the 5' end of mRNA. Cell 2006; 127:1389-400.
-
(2006)
Cell
, vol.127
, pp. 1389-1400
-
-
Cheng, H.1
Dufu, K.2
Lee, C.S.3
Hsu, J.L.4
Dias, A.5
Reed, R.6
-
16
-
-
47249089938
-
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
-
Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Ratsch G, et al. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci USA 2008; 105:8795-800.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 8795-8800
-
-
Laubinger, S.1
Sachsenberg, T.2
Zeller, G.3
Busch, W.4
Lohmann, J.U.5
Ratsch, G.6
-
17
-
-
67650590937
-
Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation
-
Gruber JJ, Zatechka DS, Sabin LR, Yong J, Lum JJ, Kong M, et al. Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation. Cell 2009; 138:328-39.
-
(2009)
Cell
, vol.138
, pp. 328-339
-
-
Gruber, J.J.1
Zatechka, D.S.2
Sabin, L.R.3
Yong, J.4
Lum, J.J.5
Kong, M.6
-
18
-
-
67650638926
-
Ars2 regulates both miRNA- and siRNA-dependent silencing and suppresses RNA virus infection in Drosophila
-
Sabin LR, Zhou R, Gruber JJ, Lukinova N, Bambina S, Berman A, et al. Ars2 regulates both miRNA- and siRNA-dependent silencing and suppresses RNA virus infection in Drosophila. Cell 2009; 138:340-51.
-
(2009)
Cell
, vol.138
, pp. 340-351
-
-
Sabin, L.R.1
Zhou, R.2
Gruber, J.J.3
Lukinova, N.4
Bambina, S.5
Berman, A.6
-
19
-
-
0034852936
-
Crystal structure of the human nuclear cap binding complex
-
Mazza C, Ohno M, Segref A, Mattaj IW, Cusack S. Crystal structure of the human nuclear cap binding complex. Mol Cell 2001; 8:383-96.
-
(2001)
Mol Cell
, vol.8
, pp. 383-396
-
-
Mazza, C.1
Ohno, M.2
Segref, A.3
Mattaj, I.W.4
Cusack, S.5
-
20
-
-
0037107401
-
Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex
-
Mazza C, Segref A, Mattaj IW, Cusack S. Large-scale induced fit recognition of an m(7)GpppG cap analogue by the human nuclear cap-binding complex. EMBO J 2002; 21:5548-57.
-
(2002)
EMBO J
, vol.21
, pp. 5548-5557
-
-
Mazza, C.1
Segref, A.2
Mattaj, I.W.3
Cusack, S.4
-
22
-
-
0035252410
-
Alternative splicing: Increasing diversity in the proteomic world
-
Graveley BR. Alternative splicing: Increasing diversity in the proteomic world. Trends Genet 2001; 17:100-7.
-
(2001)
Trends Genet
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
23
-
-
0036337915
-
A genomic view of alternative splicing
-
Modrek B, Lee C. A genomic view of alternative splicing. Nat Genet 2002; 30:13-9.
-
(2002)
Nat Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
24
-
-
1642473041
-
How prevalent is functional alternative splicing in the human genome?
-
Sorek R, Shamir R, Ast G. How prevalent is functional alternative splicing in the human genome? Trends Genet 2004; 20:68-71.
-
(2004)
Trends Genet
, vol.20
, pp. 68-71
-
-
Sorek, R.1
Shamir, R.2
Ast, G.3
-
25
-
-
69049116283
-
Stochastic noise in splicing machinery
-
Melamud E, Moult J. Stochastic noise in splicing machinery. Nucleic Acids Res 2009; 37:4873-86.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4873-4886
-
-
Melamud, E.1
Moult, J.2
-
26
-
-
0035834430
-
In silico screening for tumour-specific expressed sequences in human genome
-
Baranova AV, Lobashev AV, Ivanov DV, Krukovskaya LL, Yankovsky NK, Kozlov AP. In silico screening for tumour-specific expressed sequences in human genome. FEBS Lett 2001; 508:143-8.
-
(2001)
FEBS Lett
, vol.508
, pp. 143-148
-
-
Baranova, A.V.1
Lobashev, A.V.2
Ivanov, D.V.3
Krukovskaya, L.L.4
Yankovsky, N.K.5
Kozlov, A.P.6
-
27
-
-
33646076438
-
Stepwise RNP assembly at the site of H/ ACA RNA transcription in human cells
-
Darzacq X, Kittur N, Roy S, Shav-Tal Y, Singer RH, Meier UT. Stepwise RNP assembly at the site of H/ ACA RNA transcription in human cells. J Cell Biol 2006; 173:207-18.
-
(2006)
J Cell Biol
, vol.173
, pp. 207-218
-
-
Darzacq, X.1
Kittur, N.2
Roy, S.3
Shav-Tal, Y.4
Singer, R.H.5
Meier, U.T.6
-
28
-
-
0037039159
-
Directed proteomic analysis of the human nucleolus
-
Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, et al. Directed proteomic analysis of the human nucleolus. Curr Biol 2002; 12:1-11.
-
(2002)
Curr Biol
, vol.12
, pp. 1-11
-
-
Andersen, J.S.1
Lyon, C.E.2
Fox, A.H.3
Leung, A.K.4
Lam, Y.W.5
Steen, H.6
-
29
-
-
18244366043
-
Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition
-
Shav-Tal Y, Blechman J, Darzacq X, Montagna C, Dye BT, Patton JG, et al. Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition. Mol Biol Cell 2005; 16:2395-413.
-
(2005)
Mol Biol Cell
, vol.16
, pp. 2395-2413
-
-
Shav-Tal, Y.1
Blechman, J.2
Darzacq, X.3
Montagna, C.4
Dye, B.T.5
Patton, J.G.6
-
31
-
-
0026016404
-
A naturally occurring truncated form of FosB that inhibits Fos/Jun transcriptional activity
-
Nakabeppu Y, Nathans D. A naturally occurring truncated form of FosB that inhibits Fos/Jun transcriptional activity. Cell 1991; 64:751-9.
-
(1991)
Cell
, vol.64
, pp. 751-759
-
-
Nakabeppu, Y.1
Nathans, D.2
-
32
-
-
0026587115
-
Transformation by FosB requires a trans-activation domain missing in FosB2 that can be substituted by heterologous activation domains
-
Wisdom R, Yen J, Rashid D, Verma IM. Transformation by FosB requires a trans-activation domain missing in FosB2 that can be substituted by heterologous activation domains. Genes Dev 1992; 6:667-75.
-
(1992)
Genes Dev
, vol.6
, pp. 667-675
-
-
Wisdom, R.1
Yen, J.2
Rashid, D.3
Verma, I.M.4
-
33
-
-
0030272377
-
Importin provides a link between nuclear protein import and U snRNA export
-
Gorlich D, Kraft R, Kostka S, Vogel F, Hartmann E, Laskey RA, et al. Importin provides a link between nuclear protein import and U snRNA export. Cell 1996; 87:21-32.
-
(1996)
Cell
, vol.87
, pp. 21-32
-
-
Gorlich, D.1
Kraft, R.2
Kostka, S.3
Vogel, F.4
Hartmann, E.5
Laskey, R.A.6
-
34
-
-
69949149572
-
The molecular basis for the regulation of the capbinding complex by the importins
-
Dias SM, Wilson KF, Rojas KS, Ambrosio AL, Cerione RA. The molecular basis for the regulation of the capbinding complex by the importins. Nat Struct Mol Biol 2009; 16:930-7.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 930-937
-
-
Dias, S.M.1
Wilson, K.F.2
Rojas, K.S.3
Ambrosio, A.L.4
Cerione, R.A.5
-
35
-
-
77957659003
-
Unloading RNAs in the cytoplasm: An "importin" task
-
Dias, et al. Unloading RNAs in the cytoplasm: An "importin" task. Nucleus 2010; 1(2):139.
-
(2010)
Nucleus
, vol.1
, Issue.2
, pp. 139
-
-
Dias1
-
36
-
-
63449132795
-
Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B
-
He Y, Smith R. Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B. Cell Mol Life Sci 2009; 66:1239-56.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 1239-1256
-
-
He, Y.1
Smith, R.2
-
37
-
-
0037032415
-
PSF and p54(nrb)/NonO- multi-functional nuclear proteins
-
Shav-Tal Y, Zipori D. PSF and p54(nrb)/NonO- multi-functional nuclear proteins. FEBS Lett 2002; 531:109-14.
-
(2002)
FEBS Lett
, vol.531
, pp. 109-114
-
-
Shav-Tal, Y.1
Zipori, D.2
-
38
-
-
0015716692
-
A rapid, sensitive and specific method for the determination of protein in dilute solution
-
Schaffner W, Weissmann C. A rapid, sensitive and specific method for the determination of protein in dilute solution. Anal Biochem 1973; 56:502-14.
-
(1973)
Anal Biochem
, vol.56
, pp. 502-514
-
-
Schaffner, W.1
Weissmann, C.2
-
39
-
-
33845411711
-
Enhancement of U4/U6 small nuclear ribonucleoprotein particle association in Cajal bodies predicted by mathematical modeling
-
Klingauf M, Stanek D, Neugebauer KM. Enhancement of U4/U6 small nuclear ribonucleoprotein particle association in Cajal bodies predicted by mathematical modeling. Mol Biol Cell 2006; 17:4972-81.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 4972-4981
-
-
Klingauf, M.1
Stanek, D.2
Neugebauer, K.M.3
-
40
-
-
33748351186
-
Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells
-
Listerman I, Sapra AK, Neugebauer KM. Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat Struct Mol Biol 2006; 13:815-22.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 815-822
-
-
Listerman, I.1
Sapra, A.K.2
Neugebauer, K.M.3
-
41
-
-
26944490411
-
A combined approach for the localization and tandem affinity purification of protein complexes from metazoans
-
Cheeseman IM, Desai A. A combined approach for the localization and tandem affinity purification of protein complexes from metazoans. Sci STKE 2005; 11.
-
(2005)
Sci STKE
, pp. 11
-
-
Cheeseman, I.M.1
Desai, A.2
-
42
-
-
66249131877
-
Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division
-
Theis M, Slabicki M, Junqueira M, Paszkowski-Rogacz M, Sontheimer J, Kittler R, et al. Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division. EMBO J 2009; 28:1453-65.
-
(2009)
EMBO J
, vol.28
, pp. 1453-1465
-
-
Theis, M.1
Slabicki, M.2
Junqueira, M.3
Paszkowski-Rogacz, M.4
Sontheimer, J.5
Kittler, R.6
-
43
-
-
53049085543
-
Separating the wheat from the chaff: Unbiased filtering of background tandem mass spectra improves protein identification
-
Junqueira M, Spirin V, Santana Balbuena T, Waridel P, Surendranath V, Kryukov G, et al. Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification. J Proteome Res 2008; 7:3382-95.
-
(2008)
J Proteome Res
, vol.7
, pp. 3382-3395
-
-
Junqueira, M.1
Spirin, V.2
Santana Balbuena, T.3
Waridel, P.4
Surendranath, V.5
Kryukov, G.6
-
44
-
-
57949091054
-
Chromatin Central: Towards the comparative proteome by accurate mapping of the yeast proteomic environment
-
Shevchenko A, Roguev A, Schaft D, Buchanan L, Habermann B, Sakalar C, et al. Chromatin Central: Towards the comparative proteome by accurate mapping of the yeast proteomic environment. Genome Biol 2008; 9:167.
-
(2008)
Genome Biol
, vol.9
, pp. 167
-
-
Shevchenko, A.1
Roguev, A.2
Schaft, D.3
Buchanan, L.4
Habermann, B.5
Sakalar, C.6
-
45
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller A, Nesvizhskii AI, Kolker E, Aebersold R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 2002; 74:5383-92.
-
(2002)
Anal Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
|