-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
24744443523
-
Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex
-
Baldwin, A., Mahenthiralingam, E., Thickett, K. M., Honeybourne, D., Maiden, M. C., Govan, J. R., Speert, D. P., Lipuma, J. J., Vandamme, P. & other authors (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43, 4665-4673.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4665-4673
-
-
Baldwin, A.1
Mahenthiralingam, E.2
Thickett, K.M.3
Honeybourne, D.4
Maiden, M.C.5
Govan, J.R.6
Speert, D.P.7
Lipuma, J.J.8
Vandamme, P.9
-
3
-
-
27444437013
-
The rhizosphere as a reservoir for opportunistic human pathogenic bacteria
-
Berg, G., Eberl, L. & Hartmann, A. (2005). The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. Environ Microbiol 7, 1673-1685.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1673-1685
-
-
Berg, G.1
Eberl, L.2
Hartmann, A.3
-
4
-
-
0034099727
-
Efficacy of Burkholderia cepacia MCI 7 in disease suppression and growth promotion of maize
-
Bevivino, A., Dalmastri, C., Tabacchioni, S. & Chiarini, L. (2000). Efficacy of Burkholderia cepacia MCI 7 in disease suppression and growth promotion of maize. Biol Fertil Soils 31, 225-231.
-
(2000)
Biol Fertil Soils
, vol.31
, pp. 225-231
-
-
Bevivino, A.1
Dalmastri, C.2
Tabacchioni, S.3
Chiarini, L.4
-
5
-
-
0036529046
-
Inflammation, infection, and pulmonary function in infants and young children with cystic fibrosis
-
Dakin, C. J., Numa, A. H., Wang, H., Morton, J. R., Vertzyas, C. C. & Henry, R. L. (2002). Inflammation, infection, and pulmonary function in infants and young children with cystic fibrosis. Am J Respir Crit Care Med 165, 904-910.
-
(2002)
Am J Respir Crit Care Med
, vol.165
, pp. 904-910
-
-
Dakin, C.J.1
Numa, A.H.2
Wang, H.3
Morton, J.R.4
Vertzyas, C.C.5
Henry, R.L.6
-
6
-
-
34648841073
-
The role of gene fusions in the evolution of metabolic pathways: The histidine biosynthesis case
-
Fani, R., Brilli, M., Fondi, M. & Lio, P. (2007). The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case. BMC Evol Biol 7, S4.
-
(2007)
BMC Evol Biol
, vol.7
-
-
Fani, R.1
Brilli, M.2
Fondi, M.3
Lio, P.4
-
7
-
-
0030613350
-
Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred
-
Fries, M. R., Forney, L. J. & Tiedje, J. M. (1997). Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred. Appl Environ Microbiol 63, 1523-1530.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1523-1530
-
-
Fries, M.R.1
Forney, L.J.2
Tiedje, J.M.3
-
8
-
-
0027266917
-
Evidence for transmission of Pseudomonas cepacia by social contact in cystic fibrosis
-
Govan, J. R., Brown, P. H., Maddison, J., Doherty, C. J., Nelson, J. W., Dodd, M., Greening, A. P. & Webb, A. K. (1993). Evidence for transmission of Pseudomonas cepacia by social contact in cystic fibrosis. Lancet 342, 15-19.
-
(1993)
Lancet
, vol.342
, pp. 15-19
-
-
Govan, J.R.1
Brown, P.H.2
Maddison, J.3
Doherty, C.J.4
Nelson, J.W.5
Dodd, M.6
Greening, A.P.7
Webb, A.K.8
-
9
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
10
-
-
0034468014
-
Zoospore homing and infection events: Effects of the biocontrol bacterium Burkholderia cepacia AMMDR1 on two oomycete pathogens of pea (Pisum sativum L.)
-
Heungens, K. & Parke, J. L. (2000). Zoospore homing and infection events: effects of the biocontrol bacterium Burkholderia cepacia AMMDR1 on two oomycete pathogens of pea (Pisum sativum L.). Appl Environ Microbiol 66, 5192-5200.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5192-5200
-
-
Heungens, K.1
Parke, J.L.2
-
11
-
-
58149507650
-
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients
-
Holden, M. T. G., Drevinek, P., Seth-Smith, H., Bentley, S. D., Cerdeño-Tárraga, A. M., Crossman, L. C., Sebaihia, M., Thomson, N. R., Bason, N. & other authors (2009). The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol 191, 261-277.
-
(2009)
J Bacteriol
, vol.191
, pp. 261-277
-
-
Holden, M.T.G.1
Drevinek, P.2
Seth-Smith, H.3
Bentley, S.D.4
Cerdeño- Tárraga, A.M.5
Crossman, L.C.6
Sebaihia, M.7
Thomson, N.R.8
Bason, N.9
-
12
-
-
0032969849
-
An epidemic of Burkholderia cepacia transmitted between patients with and without cystic fibrosis
-
Holmes, A., Nolan, R., Taylor, R., Finley, R., Riley, M., Jiang, R. Z., Steinbach, S. & Goldstein, R. (1999). An epidemic of Burkholderia cepacia transmitted between patients with and without cystic fibrosis. J Infect Dis 179, 1197-1205.
-
(1999)
J Infect Dis
, vol.179
, pp. 1197-1205
-
-
Holmes, A.1
Nolan, R.2
Taylor, R.3
Finley, R.4
Riley, M.5
Jiang, R.Z.6
Steinbach, S.7
Goldstein, R.8
-
13
-
-
0033827722
-
DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III
-
Mahenthiralingam, E., Bischof, J., Byrne, S. K., Radomski, C., Davies, J. E., Av-Gay, Y. & Vandamme, P. (2000). DNA-based diagnostic approaches for identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, and Burkholderia cepacia genomovars I and III. J Clin Microbiol 38, 3165-3173.
-
(2000)
J Clin Microbiol
, vol.38
, pp. 3165-3173
-
-
Mahenthiralingam, E.1
Bischof, J.2
Byrne, S.K.3
Radomski, C.4
Davies, J.E.5
Av-Gay, Y.6
Vandamme, P.7
-
14
-
-
13444251656
-
The multifarious, multireplicon Burkholderia cepacia complex
-
DOI 10.1038/nrmicro1085
-
Mahenthiralingam, E., Urban, T. A. & Goldberg, J. B. (2005). The multifarious, multireplicon Burkholderia cepacia complex. Nat Rev Microbiol 3, 144-156. (Pubitemid 40207595)
-
(2005)
Nature Reviews Microbiology
, vol.3
, Issue.2
, pp. 144-156
-
-
Mahenthiralingam, E.1
Urban, T.A.2
Goldberg, J.B.3
-
15
-
-
70349969948
-
Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia
-
Papaleo, M. C., Russo, E., Fondi, M., Emiliani, G., Frandi, A., Brilli, M., Pastorelli, R. & Fani, R. (2009). Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia. Gene 448, 16-28.
-
(2009)
Gene
, vol.448
, pp. 16-28
-
-
Papaleo, M.C.1
Russo, E.2
Fondi, M.3
Emiliani, G.4
Frandi, A.5
Brilli, M.6
Pastorelli, R.7
Fani, R.8
-
16
-
-
1642556721
-
Infection control in cystic fibrosis
-
Saiman, L. & Siegel, J. (2004). Infection control in cystic fibrosis. Clin Microbiol Rev 17, 57-71.
-
(2004)
Clin Microbiol Rev
, vol.17
, pp. 57-71
-
-
Saiman, L.1
Siegel, J.2
-
17
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
18
-
-
0004136246
-
-
2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
19
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74, 5463-5467.
-
(1977)
Proc Natl Acad Sci U S A
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
20
-
-
0027485007
-
Epidemic of Pseudomonas cepacia in an adult cystic fibrosis unit: Evidence of person-to-person transmission
-
Smith, D. L., Gumery, L. B., Smith, E. G., Stableforth, D. E., Kaufmann, M. E. & Pitt, T. L. (1993). Epidemic of Pseudomonas cepacia in an adult cystic fibrosis unit: evidence of person-to-person transmission. J Clin Microbiol 31, 3017-3022.
-
(1993)
J Clin Microbiol
, vol.31
, pp. 3017-3022
-
-
Smith, D.L.1
Gumery, L.B.2
Smith, E.G.3
Stableforth, D.E.4
Kaufmann, M.E.5
Pitt, T.L.6
-
21
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
22
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
23
-
-
0022350960
-
Cystic fibrosis locus defined by a genetically linked polymorphic DNA marker
-
Tsui, L. C., Buchwald, M., Barker, D., Braman, J. C., Knowlton, R., Schumm, J. W., Eiberg, H., Mohr, J., Kennedy, D. & other authors (1985). Cystic fibrosis locus defined by a genetically linked polymorphic DNA marker. Science 230, 1054-1057. (Pubitemid 16192696)
-
(1985)
Science
, vol.230
, Issue.4729
, pp. 1054-1057
-
-
Tsui, L.-C.1
Buchwald, M.2
Barker, D.3
-
24
-
-
0030827928
-
Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov
-
Vandamme, P., Holmes, B., Vancanneyt, M., Coenye, T., Hoste, B., Coopman, R., Revets, H., Lauwers, S., Gillis, M. & other authors (1997). Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. Int J Syst Bacteriol 47, 1188-1200.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 1188-1200
-
-
Vandamme, P.1
Holmes, B.2
Vancanneyt, M.3
Coenye, T.4
Hoste, B.5
Coopman, R.6
Revets, H.7
Lauwers, S.8
Gillis, M.9
-
25
-
-
0037013965
-
Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools
-
Vandamme, P., Henry, D., Coenye, T., Nzula, S., Vancanneyt, M., LiPuma, J. J., Speert, D. P., Govan, J. R. W. & Mahenthiralingam, E. (2002). Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol Med Microbiol 33, 143-149.
-
(2002)
FEMS Immunol Med Microbiol
, vol.33
, pp. 143-149
-
-
Vandamme, P.1
Henry, D.2
Coenye, T.3
Nzula, S.4
Vancanneyt, M.5
LiPuma, J.J.6
Speert, D.P.7
Govan, J.R.W.8
Mahenthiralingam, E.9
-
26
-
-
0037342665
-
Burkholderia cenocepacia sp. nov. - A new twist to an old story
-
Vandamme, P., Holmes, B., Coenye, T., Goris, J., Mahenthiralingam, E., LiPuma, J. J. & Govan, J. R. W. (2003). Burkholderia cenocepacia sp. nov. - a new twist to an old story. Res Microbiol 154, 91-96.
-
(2003)
Res Microbiol
, vol.154
, pp. 91-96
-
-
Vandamme, P.1
Holmes, B.2
Coenye, T.3
Goris, J.4
Mahenthiralingam, E.5
LiPuma, J.J.6
Govan, J.R.W.7
-
27
-
-
52449132309
-
Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex
-
Vanlaere, E., Lipuma, J. J., Baldwin, A., Henry, D., De Brandt, E., Mahenthiralingam, E., Speert, D., Dowson, C. & Vandamme, P. (2008). Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex. Int J Syst Evol Microbiol 58, 1580-1590.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1580-1590
-
-
Vanlaere, E.1
Lipuma, J.J.2
Baldwin, A.3
Henry, D.4
De Brandt, E.5
Mahenthiralingam, E.6
Speert, D.7
Dowson, C.8
Vandamme, P.9
-
28
-
-
60349114025
-
Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov
-
Vanlaere, E., Baldwin, A., Gevers, D., Henry, D., De Brandt, E., LiPuma, J. J., Mahenthiralingam, E., Speert, D. P., Dowson, C. & Vandamme, P. (2009). Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. Int J Syst Evol Microbiol 59, 102-111.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 102-111
-
-
Vanlaere, E.1
Baldwin, A.2
Gevers, D.3
Henry, D.4
De Brandt, E.5
LiPuma, J.J.6
Mahenthiralingam, E.7
Speert, D.P.8
Dowson, C.9
Vandamme, P.10
-
29
-
-
0036841749
-
Evaluation of species-specific recA-based PCR tests for genomovar level identification within the Burkholderia cepacia complex
-
Vermis, K., Coenye, T., Mahenthiralingam, E., Nelis, H. J. & Vandamme, P. (2002). Evaluation of species-specific recA-based PCR tests for genomovar level identification within the Burkholderia cepacia complex. J Med Microbiol 51, 937-940.
-
(2002)
J Med Microbiol
, vol.51
, pp. 937-940
-
-
Vermis, K.1
Coenye, T.2
Mahenthiralingam, E.3
Nelis, H.J.4
Vandamme, P.5
-
30
-
-
0028823871
-
Outcome of Burkholderia (Pseudomonas) cepacia colonisation in children with cystic fibrosis following a hospital outbreak
-
Whiteford, M. L., Wilkinson, J. D., McColl, J. H., Conlon, F. M., Michie, J. R., Evans, T. J. & Paton, J. Y. (1995). Outcome of Burkholderia (Pseudomonas) cepacia colonisation in children with cystic fibrosis following a hospital outbreak. Thorax 50, 1194-1198.
-
(1995)
Thorax
, vol.50
, pp. 1194-1198
-
-
Whiteford, M.L.1
Wilkinson, J.D.2
McColl, J.H.3
Conlon, F.M.4
Michie, J.R.5
Evans, T.J.6
Paton, J.Y.7
|