Ca2+ binding sites in calmodulin and troponin C alter interhelical angle movements

FEBS Letters

Volumn 561, Issue 1-3, 2004, Pages 51-57

  Goto, Kunihiko ^a   Toyama, Akira ^b   Takeuchi, Hideo ^b   Takayama, Kazuyoshi ^b   Saito, Tsutomu ^b   Iwamoto, Masatoshi ^c   Yeh, Jay Z ^a   Narahashi, Toshio ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

^b TOHOKU UNIVERSITY   (Japan)

^c TOHOKU GAKUIN UNIVERSITY   (Japan)

Author keywords

Alpha helix; Calcium binding protein; CaM, calmodulin; Conformational change; EF hand; Molecular dynamics; RMSD, root mean square difference; Root mean square difference; TnC, troponin C

Indexed keywords

CALCIUM BINDING PROTEIN; CALCIUM ION; CALMODULIN; TROPONIN C; CALCIUM; XENOPUS PROTEIN;

ALPHA HELIX; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CALCIUM BINDING; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; HYDROPHOBICITY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE; STEREOCHEMISTRY; ANIMAL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; KINETICS; METABOLISM; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE;

ANIMALS; BINDING SITES; CALCIUM; CALMODULIN; COMPUTER SIMULATION; HYDROPHOBICITY; KINETICS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; TROPONIN C; XENOPUS PROTEINS;

EID: 1542358152     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(04)00114-0     Document Type: Article

References (41)

1. Kakiuchi S., Yamazaki R. Biochem. Biophys. Res. Commun. 41:1970;1104-1110.
2. Ebashi S. J. Biochem. 48:1960;150-158.
3. Leavis P.C., Gergeley J. CRC Crit. Rev. Biochem. 16:1984;235-305.
4. Zot A.S., Potter J.D. Annu. Rev. Biophys. Biophys. Chem. 16:1987;535-559.
5. Ohtsuki I., Maruyama K., Ebashi S. Adv. Protein Chem. 38:1986;1-67.
6. Farah C.S., Reinach F.C. FASEB J. 9:1995;755-767.
7. Ikura M., et al. Biochemistry. 22:1983;2573-2579.
8. Andersson A., Forsen S., Thulin E., Vogel H.J. Biochemistry. 22:1983;2309-2313.
9. Dalgarno D.C., et al. Eur. J. Biochem. 138:1984;281-289.
10. Minowa O., Yagi K. J. Biochem. 96:1984;1175-1182.
11. Klee, C.B. (1988) In: Calmodulin (Cohen, P. and Klee, C.B., Eds.), pp. 35-56, Elsevier, New York.
12. Linse S., Hjalmersson A., Forsen S. J. Biol. Chem. 266:1991;8050-8054.
13. Grabarek Z., Tao T., Gergely J. J. Muscle Res. Cell Motil. 13:1992;383-393.
14. Gagne S.M., Tsuda S., Li M.X., Smillie L.B., Sykes B.D. Nat. Struct. Biol. 2:1995;784-789.
15. Zhang M., Tanaka T., Ikura M. Nat. Struct. Biol. 2:1995;758-767.
16. Chattopadhyaya R., Weador W.E., Means A.R., Quiocho F.A. J. Mol. Biol. 228:1995;1177-1195.
17. Meador W.E., Means A.R., Quiocho F.A. Science. 257:1992;1251-1255.
18. Li Y., Love M.L., Putkey J.A., Cohen C. Proc. Natl. Acad. Sci. USA. 97:2000;5140-5145.
19. Vassylyev D.G., Takeda S., Wakatsuki S., Maeda K., Maeda Y. Proc. Natl. Acad. Sci. USA. 95:1998;4847-4852.
20. Van Der Spoel D., De Groot B.L., Hayward S., Berendsen H.J.C., Vogel H.J. Protein Sci. 5:1996;2044-2053.
21. Wriggers W., Mehler E., Pitici F., Weinstein H., Schulten K. Biophys. J. 74:1998;1622-1639.
22. Vigil D., Gallagher S.C., Trewhella J., Garcia A.E. Biophys. J. 80:2001;2082-2092.
23. Yamaotsu N., Suga M., Hirono S. Biopolymers. 58:2001;410-421.
24. Yang C., Jas G.S., Kuczera K. J. Biomol. Struct. 19:2001;247-271.
25. Komeiji Y., Ueno Y., Uebayasi M. FEBS Lett. 521:2002;133-139.
26. Chou J.J., Li S., Klee C.B., Bax A. Nat. Struct. Biol. 8:2001;990-997.
27. Kuboniwa H., Tjandra N., Grezesiek S., Ren H., Klee C.B., Bax A. Nat. Struct. Biol. 2:1995;768-776.
28. Darden T., York D., Pedersen L. J. Chem. Phys. 98:1993;10089-10092.
29. Hwang M.J., Stockfisch T.P., Hagler A.T. J. Am. Chem. Soc. 116:1994;2515-2518.
30. Houdusse A., Love M.L., Dominguez R., Grabarek Z., Cohen C. Structure. 5:1997;1695-1711.
31. Strynadka N.C., Cherney M., Sielecki A., Li M.X., Smillies L.B., James M.N.G. J. Mol. Biol. 273:1997;238-255.
32. Ohya Y., Botstein D. Science. 263:1994;963-966.
33. Meyer D.F., Mabuchi Y., Grabarek Z. J. Biol. Chem. 271:1996;11284-11290.
34. Richardson J.S., Richardson D.C. Proteins. 4:1988;229-239.
35. Evanas J., Forsen S., Malmendal A., Akke M. J. Mol. Biol. 289:1999;603-617.
36. Goto K. Tohoku J. Exp. Med. 139:1983;159-164.
37. Goto K. J. Theor. Biol. 170:1994;267-272.
38. Goto K. Biochem. Biophys. Res. Commun. 206:1995;497-501.
39. Goto K., Iwamoto M. Tohoku J. Exp. Med. 182:1997;15-33.
40. Goto K. Prog. Anesth. Mech. 5:1998;1-22.
41. Goto, K. et al. (2004) J. Mem. Biol., submitted.