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Volumn 19, Issue 10, 2010, Pages 1991-1995

RosettaHoles2: A volumetric packing measure for protein structure refinement and validation

Author keywords

Crystallography; Protein core packing; Protein design; Protein folding; Protein structure validation

Indexed keywords

ARTICLE; CHEMICAL STRUCTURE; DEVICE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; ROSETTAHOLES; SCORING SYSTEM; X RAY CRYSTALLOGRAPHY;

EID: 77957296071     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1002/pro.458     Document Type: Article
Times cited : (36)

References (13)
  • 1
    • 50649095790 scopus 로고    scopus 로고
    • Macromolecular modeling with rosetta
    • Das R, Baker D (2008) Macromolecular modeling with rosetta. Annu Rev Biochem 77:363-382.
    • (2008) Annu Rev Biochem , vol.77 , pp. 363-382
    • Das, R.1    Baker, D.2
  • 4
    • 58149463441 scopus 로고    scopus 로고
    • RosettaHoles: Rapid assessment of protein core packing for structure prediction, refinement, design, and validation
    • Sheffler W, Baker D (2009) RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation. Protein Sci 18:229-239.
    • (2009) Protein Sci , vol.18 , pp. 229-239
    • Sheffler, W.1    Baker, D.2
  • 5
    • 0033135638 scopus 로고    scopus 로고
    • Effective energy function for proteins in solution
    • Lazaridis T, Karplus M (1999) Effective energy function for proteins in solution. Proteins 35:133-152.
    • (1999) Proteins , vol.35 , pp. 133-152
    • Lazaridis, T.1    Karplus, M.2
  • 6
    • 39749166769 scopus 로고    scopus 로고
    • The geometry of biomolecular solvation
    • Jacob E. Goodman, János Pach and Emo Welzl, editors. Cambridge: MSRI publications
    • Edelsbrunner E, Koehl P, The geometry of biomolecular solvation. In: Jacob E. Goodman, János Pach and Emo Welzl, editors. Combinatorial and computational geometry, Vol. 52. Cambridge: MSRI publications, pp 243-275.
    • Combinatorial and Computational Geometry , vol.52 , pp. 243-275
    • Edelsbrunner, E.1    Koehl, P.2
  • 9
    • 5344244656 scopus 로고    scopus 로고
    • Vienna, Austria: R Foundation for Statistical Computing. ISBN 3-900051-07-0, Available at
    • R Development Core Team (2008) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. ISBN 3-900051-07-0, Available at: http://www.R-project.org.
    • (2008) R: A Language and Environment for Statistical Computing
  • 10
    • 58149464546 scopus 로고    scopus 로고
    • Sorting the chaff from the wheat at the PDB
    • Tronrud DE, Matthews BW (2009) Sorting the chaff from the wheat at the PDB. Protein Sci 18:2-5.
    • (2009) Protein Sci , vol.18 , pp. 2-5
    • Tronrud, D.E.1    Matthews, B.W.2
  • 11
    • 0000261801 scopus 로고
    • Staphylococcal nuclease: Proposed mechanism of action based on structure of enzyme-thymidine 3′,5′-bisphosphate-calcium ion complex at 1.5-A resolution
    • PubMed
    • Cotton FA, Hazenjunior EE, Jr, Legg MJ (1979) Staphylococcal nuclease: proposed mechanism of action based on structure of enzyme-thymidine 3′,5′-bisphosphate-calcium ion complex at 1.5-A resolution. Proc Natl Acad Sci USA 76:2551 PubMed.
    • (1979) Proc Natl Acad Sci USA , vol.76 , pp. 2551
    • Cotton, F.A.1    Hazenjunior Jr., E.E.2    Legg, M.J.3
  • 12
    • 0038730769 scopus 로고    scopus 로고
    • High-resolution structures of retinol-binding protein in complex with retinol: PH-induced protein structural changes in the crystal state
    • Calderone V, Berni R, Zanotti G (2003) High-resolution structures of retinol-binding protein in complex with retinol: pH-induced protein structural changes in the crystal state. J Mol Biol 329:841-850.
    • (2003) J Mol Biol , vol.329 , pp. 841-850
    • Calderone, V.1    Berni, R.2    Zanotti, G.3
  • 13
    • 4143077357 scopus 로고    scopus 로고
    • Helical shifts generate two distinct conformers in the atomic resolution structure of the CheA phosphotransferase domain from Thermotoga maritima
    • DOI 10.1016/j.jmb.2004.06.061, PII S002228360400765X
    • Quezada CM, Gradinaru C, Simon MI, Bilwes AM, Crane BR (2004) Helical shifts generate two distinct conformers in the atomicresolution structure of the CheA phosphotransferase domainfrom Thermotoga maritima. J Mol Biol 341:1283-1294. (Pubitemid 39092315)
    • (2004) Journal of Molecular Biology , vol.341 , Issue.5 , pp. 1283-1294
    • Quezada, C.M.1    Gradinaru, C.2    Simon, M.I.3    Bilwes, A.M.4    Crane, B.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.