Development of molecular markers for marker-assisted selection of dieback disease resistance in lettuce (Lactuca sativa)

Acta Horticulturae

Volumn 859, Issue , 2010, Pages 401-408

  Simko, I ^a   Pechenick, D A ^a   McHale, L K ^b   Truco, M J ^b   Ochoa, O E ^b   Michelmore, R W ^b   Scheffler, B E ^c  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Association mapping; High resolution DNA melting analysis; Lettuce dieback disease; Linkage mapping

Indexed keywords

LACTUCA; LACTUCA SATIVA; LETTUCE NECROTIC STUNT VIRUS; LYCOPERSICON ESCULENTUM; TOMATO BUSHY STUNT VIRUS;

EID: 77957295555     PISSN: 05677572     EISSN: None     Source Type: Book Series    
DOI: 10.17660/ActaHortic.2010.859.49     Document Type: Conference Paper

References (18)

1. Barrett, J.C., Fry, B., Maller, J. and Daly, M.J. 2005. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21:263-265.
2. Bradbury, P.J., Zhang, Z., Kroon, D.E., Casstevens, T.M., Ramdoss, Y. and Buckler, E.S. 2007. TASSEL: Software for association mapping of complex traits in diverse samples. Bioinformatics 23:2633-2635.
3. CGPDB. 2009. Compositae Genome Project Database. http://cgpdb.ucdavis.edu
4. CLGRP. 2009. California Leafy Greens Research Program. http://calgreens.org
5. Falush, D., Stephens, M. and Pritchard, J.K. 2007. Inference of population structure using multilocus genotype data: Dominant markers and null alleles. Mol. Ecol. Notes 7:574-578.
6. Grube, R.C., Wintermantel, W.M., Hand, P., Aburomia, R., Pink, D.A.C. and Ryder, E.J. 2005. Genetic analysis and mapping of resistance to lettuce dieback: a soilborne disease caused by tombusviruses. Theor. Appl. Genet. 110:259-268.
7. Jagger, I.C. 1940. Brown blight of lettuce. Phytopathology 30:53-64.
8. Lawson, W.R., Goulter, K.C., Henry, R.J., Kong, G.A. and Kochman, J.K. 1998. Markerassisted selection for two rust resistance genes in sunflower. Mol. Breed. 4:227-234.
9. Lebeda, A., Ryder, E.J., Grube, R., Dolezalova, I. and Kristkova, E. 2007. Lettuce (Asteraceae; Lactuca spp.). p.377-472. In: R.J. Singh (ed.), Genetic resources, chromosome engineering, and crop improvement: Vol. 3. Vegetable crops. CRC Press, Boca Raton, FL.
10. Manly, K.F., Cudmore R.H, Jr. and Meer, J.M. 2001. Map Manager QTX, cross-platform software for genetic mapping. Mamm. Genome 12:930-932.
11. Moreno-Vázquez, S., Ochoa, O.E., Faber, N., Chao, S., Jacobs, J.M.E., Maisonneuve, B., Kesseli, R.V. and Michelmore, R.W. 2003. SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa). Genome 46:1059-1069.
12. Obermeier, C., Sears, J.L., Liu, H.Y., Schlueter, K.O., Ryder, E.J., Duffus, J.E., Koike, S.T. and Wisler, G.C. 2001. Characterization of distinct tombusviruses that cause diseases of lettuce and tomato in the western United States. Phytopathology 91:797-806.
13. Rozen, S. and Skaletsky, H.J. 2000. Primer3 on the WWW for general users and for biologist programmers. p.365-386. In: S. Krawetz and S. Misener (eds.), Bioinformatics methods and protocols: Methods in molecular biology. Humana Press, Totowa, NJ.
14. Ryder, E.J. 1997. Introduction. p.1-8. In: R.M. Davis, K.V. Subbarao, R.N. Raid and E.A. Kurtz (eds.), Compendium of lettuce diseases. APS Press, St. Paul, MN.
15. Simko, I. and Hu, J. 2008. Population structure in cultivated lettuce and its impact on association mapping. J. Am. Soc. Hort. Sci. 133:61-68.
16. Simko, I. 2009. Development of EST-SSR markers for the study of population structure in lettuce (Lactuca sativa L.). J. Hered. 100:256-262.
17. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
18. Wisler, G.C. and Duffus, J.E. 2000. A century of plant virus management in the Salinas Valley of California, 'East of Eden'. Virus Res. 71:161-169.