Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis

Biochemical and Biophysical Research Communications

Volumn 400, Issue 4, 2010, Pages 599-605

  Macqueen, Daniel J ^a   Bower, Neil I ^a   Johnston, Ian A ^a  

^a UNIVERSITY OF ST ANDREWS   (United Kingdom)

Author keywords

Akirin gene family paralogues; Atlantic salmon (Salmo salar L.); Gene paralogue regulation; Myogenesis

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; PROTEIN; PROTEIN AKIRIN; SOMATOMEDIN B; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; ATLANTIC SALMON; CELL MATURATION; CELL PROLIFERATION; CLUSTER ANALYSIS; DOWN REGULATION; GENE EXPRESSION PROFILING; MUSCLE DEVELOPMENT; MYOBLAST; NONHUMAN; PRIORITY JOURNAL; RNA EXTRACTION; TRANSCRIPTION REGULATION;

ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE REGULATORY NETWORKS; MUSCLE DEVELOPMENT; RNA, MESSENGER; SALMO SALAR;

SALMO SALAR; SALMONIDAE; VERTEBRATA;

EID: 77957288875     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2010.08.110     Document Type: Article

References (20)

1. Macqueen D.J., Johnston I.A. Evolution of the multifaceted eukaryotic akirin gene family. BMC Evol. Biol. 2009, 9:34.
2. Macqueen D.J., Kristjánsson B.K., Johnston I.A. Salmonid genomes have a remarkably expanded akirin family, co-expressed with genes from conserved pathways governing skeletal muscle growth and catabolism. Physiol. Genomics 2010, 42:134-148.
3. Goto A., Matsushita K., Gesellchen V., et al. Akirins are highly conserved nuclear proteins required for NF-kappaB-dependent gene expression in drosophila and mice. Nat. Immunol. 2008, 9:97-104.
4. Komiya Y., Kurabe N., Katagiri K., et al. A novel binding factor of 14-3-3beta functions as a transcriptional repressor and promotes anchorage-independent growth, tumorigenicity, and metastasis. J. Biol. Chem. 2008, 283:18753-18764.
5. Marshall A., Salerno M.S., Thomas M., et al. Mighty is a novel promyogenic factor in skeletal myogenesis. Exp. Cell Res. 2008, 314:1013-1029.
6. Salerno M.S., Dyer K., Bracegirdle J., et al. Akirin1 (Mighty), a novel promyogenic factor regulates muscle regeneration and cell chemotaxis. Exp. Cell Res. 2009, 315:2012-2021.
7. Bower N.I., Johnston I.A. Selection of reference genes for expression studies with fish myogenic cell cultures. BMC Mol. Biol. 2009, 10:80.
8. Bower N.I., Johnston I.A. Transcriptional regulation of the IGF signaling pathway by amino acids and insulin-like growth factors during myogenesis in Atlantic salmon. PloS One 2010, 5:e11100.
9. Bustin S.A., Benes V., Garson J.A., et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 2009, 55:611-622.
10. Bower N.I., Li X., Taylor R., Johnston I.A. Switching to fast growth: the insulin-like growth factor (IGF) system in skeletal muscle of Atlantic salmon. J. Exp. Biol. 2008, 211:3859-3870.
11. Macqueen D.J., Johnston I.A. A novel salmonid myoD gene is distinctly regulated during development and probably arose by duplication after the genome tetraploidization. FEBS Lett. 2006, 580:4996-5002.
12. Bower N.I., Johnston I.A. Paralogs of Atlantic salmon myoblast determination factor genes are distinctly regulated in proliferating and differentiating myogenic cells. Am. J. Physiol. Regul. Integr. Comp. Physiol. 2010, 298:R1615-R1626.
13. Caraux G., Pinloche S. Permutmatrix: a graphical environment to arrange gene expression profiles in optimal linear order. Bioinformatics 2005, 21:1280-1281.
14. Muller P.Y., Janovjak H., Miserez A.R., Dobbie Z. Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques 2002, 32:1372-1378.
15. Andersen C.L., Jensen J.L., Ørntoft T.F. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
16. Black B.L., Olson E.N. Transcriptional control of muscle development by myocyte enhancer factor-2 (MEF2) proteins. Annu. Rev. Cell Dev. Biol. 1998, 14:167-196.
17. Berkes C.A., Tapscott S.J. MyoD and the transcriptional control of myogenesis. Semin. Cell Dev. Biol. 2005, 16:585-595.
18. Nowak S.J., Gonzalez K., Baylies M.K. Bhringi, a highly conserved regulator of Twist transcription factor activity. A Dros. Res. Conf. 2008, 49:127.
19. McKinsey T.A., Zhang CL C.L., Olson E.N. Activation of the myocyte enhancer factor-2 transcription factor by calcium/calmodulin-dependent protein kinase-stimulated binding of 14-3-3 to histone deacetylase 5. Proc. Natl. Acad. Sci. USA 2000, 97:14400-14405.
20. Benton M.J., Donoghue P.C.J. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 2007, 24:25-53.