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Volumn 161, Issue 8, 2010, Pages 687-693

Structural differentiation of bacterial communities in indole-degrading bioreactors under denitrifying and sulfate-reducing conditions

Author keywords

16S rRNA gene; Bacterial community; Denitrifying bioreactor; Indole degradation; Sulfate reducing bioreactor

Indexed keywords

INDOLE; RNA 16S;

EID: 77957286305     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2010.06.010     Document Type: Article
Times cited : (50)

References (38)
  • 1
    • 0022894771 scopus 로고
    • Anaerobic degradation of indolic compounds by sulfate-reducing enrichment cultures, and description of Desulfobacterium indolicum gen. nov., sp. nov
    • Bak F., Widdel F. Anaerobic degradation of indolic compounds by sulfate-reducing enrichment cultures, and description of Desulfobacterium indolicum gen. nov., sp. nov. Arch. Microbiol. 1986, 146:470-476.
    • (1986) Arch. Microbiol. , vol.146 , pp. 470-476
    • Bak, F.1    Widdel, F.2
  • 2
    • 0023119666 scopus 로고
    • Conversion of indole to oxindole under methanogenic conditions
    • Berry D., Madsen E., Bollag J. Conversion of indole to oxindole under methanogenic conditions. Appl. Environ. Microbiol. 1987, 53:180-182.
    • (1987) Appl. Environ. Microbiol. , vol.53 , pp. 180-182
    • Berry, D.1    Madsen, E.2    Bollag, J.3
  • 3
    • 0035289309 scopus 로고    scopus 로고
    • Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae
    • Boon N., Goris J., De Vos P., Verstraete W., Top E.M. Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae. Appl. Environ. Microbiol. 2001, 67:1107-1115.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1107-1115
    • Boon, N.1    Goris, J.2    De Vos, P.3    Verstraete, W.4    Top, E.M.5
  • 4
    • 0020622839 scopus 로고
    • Degradation of indole by Alcaligenes sp.
    • Claus G., Kutzner H.J. Degradation of indole by Alcaligenes sp. Syst. Appl. Microbiol. 1983, 4:169-180.
    • (1983) Syst. Appl. Microbiol. , vol.4 , pp. 169-180
    • Claus, G.1    Kutzner, H.J.2
  • 5
    • 0030916145 scopus 로고    scopus 로고
    • Comparative study of five polycyclic aromatic hydrocarbon degrading bacterial strains isolated from contaminated soils
    • Dagher F., Déziel E., Lirette P. Comparative study of five polycyclic aromatic hydrocarbon degrading bacterial strains isolated from contaminated soils. Can. J. Microbiol. 1997, 43:368-377.
    • (1997) Can. J. Microbiol. , vol.43 , pp. 368-377
    • Dagher, F.1    Déziel, E.2    Lirette, P.3
  • 6
    • 49449100545 scopus 로고    scopus 로고
    • Spatial and temporal patterns in the microbial diversity of a meromictic soda lake in Washington State
    • Dimitriu P.A., Pinkart H.C., Peyton B.M., Mormile M.R. Spatial and temporal patterns in the microbial diversity of a meromictic soda lake in Washington State. Appl. Environ. Microbiol. 2008, 74:4877-4888.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 4877-4888
    • Dimitriu, P.A.1    Pinkart, H.C.2    Peyton, B.M.3    Mormile, M.R.4
  • 7
    • 29144450332 scopus 로고    scopus 로고
    • Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography
    • Ginige M., Keller J., Blackall L. Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography. Appl. Environ. Microbiol. 2005, 71:8683-8691.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8683-8691
    • Ginige, M.1    Keller, J.2    Blackall, L.3
  • 8
    • 0026629059 scopus 로고
    • Metabolism of 3-methylindole by a methanogenic consortium
    • Gu J., Berry D. Metabolism of 3-methylindole by a methanogenic consortium. Appl. Environ. Microbiol. 1992, 58:2667-2669.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2667-2669
    • Gu, J.1    Berry, D.2
  • 9
    • 0036741558 scopus 로고    scopus 로고
    • Relationship between structures of substituted indolic compounds and their degradation by marine anaerobic microorganisms
    • Gu J., Fan Y., Shi H. Relationship between structures of substituted indolic compounds and their degradation by marine anaerobic microorganisms. Mar. Pollut. Bull. 2002, 45:379-384.
    • (2002) Mar. Pollut. Bull. , vol.45 , pp. 379-384
    • Gu, J.1    Fan, Y.2    Shi, H.3
  • 10
    • 65849284656 scopus 로고    scopus 로고
    • Comparison of microbial community structure of quinoline and indole acclimated denitrifying bioreactor
    • Hong X., Liu B., Zhang X., Zhao L. Comparison of microbial community structure of quinoline and indole acclimated denitrifying bioreactor. Wei Sheng Wu Xue Bao 2008, 48:503-507.
    • (2008) Wei Sheng Wu Xue Bao , vol.48 , pp. 503-507
    • Hong, X.1    Liu, B.2    Zhang, X.3    Zhao, L.4
  • 12
    • 0030959852 scopus 로고    scopus 로고
    • Metabolic pathways of quinoline, indole and their methylated analogs by Desulfobacterium indolicum (DSM 3383)
    • Johansen S.S., Licht D., Arvin E., Mosbæk H., Hansen A.B. Metabolic pathways of quinoline, indole and their methylated analogs by Desulfobacterium indolicum (DSM 3383). Appl. Microbiol. Biotechnol. 1997, 47:292-300.
    • (1997) Appl. Microbiol. Biotechnol. , vol.47 , pp. 292-300
    • Johansen, S.S.1    Licht, D.2    Arvin, E.3    Mosbæk, H.4    Hansen, A.B.5
  • 13
    • 0035989129 scopus 로고    scopus 로고
    • The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach
    • Juretschko S., Loy A., Lehner A., Wagner M. The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. Syst. Appl. Microbiol. 2002, 25:84-99.
    • (2002) Syst. Appl. Microbiol. , vol.25 , pp. 84-99
    • Juretschko, S.1    Loy, A.2    Lehner, A.3    Wagner, M.4
  • 14
    • 0036307713 scopus 로고    scopus 로고
    • Members of the family Comamonadaceae as primary poly(3-hydroxybutyrate-co-3-hydroxyvalerate)-degrading denitrifiers in activated sludge as revealed by a polyphasic approach
    • Khan S., Horiba Y., Yamamoto M., Hiraishi A. Members of the family Comamonadaceae as primary poly(3-hydroxybutyrate-co-3-hydroxyvalerate)-degrading denitrifiers in activated sludge as revealed by a polyphasic approach. Appl. Environ. Microbiol. 2002, 68:3206-3214.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3206-3214
    • Khan, S.1    Horiba, Y.2    Yamamoto, M.3    Hiraishi, A.4
  • 15
    • 77953594953 scopus 로고    scopus 로고
    • The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes
    • Kirchman D.L., Cottrell M.T., Lovejoy C. The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ Microbiol. 2010.
    • (2010) Environ Microbiol.
    • Kirchman, D.L.1    Cottrell, M.T.2    Lovejoy, C.3
  • 17
    • 58149204132 scopus 로고    scopus 로고
    • Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet
    • Lau M.C., Aitchison J.C., Pointing S.B. Bacterial community composition in thermophilic microbial mats from five hot springs in central Tibet. Extremophiles 2009, 13:139-149.
    • (2009) Extremophiles , vol.13 , pp. 139-149
    • Lau, M.C.1    Aitchison, J.C.2    Pointing, S.B.3
  • 18
    • 49249112075 scopus 로고    scopus 로고
    • Monitoring bacterial and archaeal community shifts in a mesophilic anaerobic batch reactor treating a high-strength organic wastewater
    • Lee C., Kim J., Shin S.G., Hwang S. Monitoring bacterial and archaeal community shifts in a mesophilic anaerobic batch reactor treating a high-strength organic wastewater. FEMS Microbiol. Ecol. 2008, 65:544-554.
    • (2008) FEMS Microbiol. Ecol. , vol.65 , pp. 544-554
    • Lee, C.1    Kim, J.2    Shin, S.G.3    Hwang, S.4
  • 19
    • 0028450606 scopus 로고
    • Population densities and enzymatic activities of heterotrophic bacteria in sewer biofilms and activated sludge
    • Lemmer H., Roth D., Schade M. Population densities and enzymatic activities of heterotrophic bacteria in sewer biofilms and activated sludge. Water Res. 1994, 28:1341-1346.
    • (1994) Water Res. , vol.28 , pp. 1341-1346
    • Lemmer, H.1    Roth, D.2    Schade, M.3
  • 20
    • 33644841019 scopus 로고    scopus 로고
    • Cometabolic biodegradation of nitrogenous heterocyclic compounds indole and pyridine under anoxic conditions
    • Li Y., Li W., Gu G. Cometabolic biodegradation of nitrogenous heterocyclic compounds indole and pyridine under anoxic conditions. Huan Jing Ke Xue 2006, 27:300-304.
    • (2006) Huan Jing Ke Xue , vol.27 , pp. 300-304
    • Li, Y.1    Li, W.2    Gu, G.3
  • 21
    • 33645037113 scopus 로고    scopus 로고
    • Thauera and Azoarcus as functionally important genera in a denitrifying quinoline-removal bioreactor as revealed by microbial community structure comparison
    • Liu B., Zhang F., Feng X., Liu Y., Yan X., Zhang X., Wang L., Zhao L. Thauera and Azoarcus as functionally important genera in a denitrifying quinoline-removal bioreactor as revealed by microbial community structure comparison. FEMS Microbiol. Ecol. 2006, 55:274-286.
    • (2006) FEMS Microbiol. Ecol. , vol.55 , pp. 274-286
    • Liu, B.1    Zhang, F.2    Feng, X.3    Liu, Y.4    Yan, X.5    Zhang, X.6    Wang, L.7    Zhao, L.8
  • 22
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 2005, 71:8228-8235.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 23
    • 34249968319 scopus 로고
    • Pathway of indole metabolism by a denitrifying microbial community
    • Madsen E., Bollag J.-M. Pathway of indole metabolism by a denitrifying microbial community. Arch. Microbiol. 1989, 151:71-76.
    • (1989) Arch. Microbiol. , vol.151 , pp. 71-76
    • Madsen, E.1    Bollag, J.-M.2
  • 24
    • 0023672509 scopus 로고
    • Environmental factors affecting indole metabolism under anaerobic conditions
    • Madsen E., Francis A., Bollag J. Environmental factors affecting indole metabolism under anaerobic conditions. Appl. Environ. Microbiol. 1988, 54:74-78.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 74-78
    • Madsen, E.1    Francis, A.2    Bollag, J.3
  • 25
    • 50549091706 scopus 로고    scopus 로고
    • Development of group-specific PCR-DGGE fingerprinting for monitoring structural changes of Thauera spp. in an industrial wastewater treatment plant responding to operational perturbations
    • Mao Y., Zhang X., Yan X., Liu B., Zhao L. Development of group-specific PCR-DGGE fingerprinting for monitoring structural changes of Thauera spp. in an industrial wastewater treatment plant responding to operational perturbations. J. Microbiol. Methods 2008, 75:231-236.
    • (2008) J. Microbiol. Methods , vol.75 , pp. 231-236
    • Mao, Y.1    Zhang, X.2    Yan, X.3    Liu, B.4    Zhao, L.5
  • 26
    • 0036281185 scopus 로고    scopus 로고
    • Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromaticasp. nov., and Azoarcus buckelii sp. nov
    • Mechichi T., Stackebrandt E., Gad'on N., Fuchs G. Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromaticasp. nov., and Azoarcus buckelii sp. nov. Arch. Microbiol. 2002, 178:26-35.
    • (2002) Arch. Microbiol. , vol.178 , pp. 26-35
    • Mechichi, T.1    Stackebrandt, E.2    Gad'on, N.3    Fuchs, G.4
  • 27
    • 67649603926 scopus 로고    scopus 로고
    • Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park
    • Miller S.R., Strong A.L., Jones K.L., Ungerer M.C. Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park. Appl. Environ. Microbiol. 2009, 75:4565-4572.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 4565-4572
    • Miller, S.R.1    Strong, A.L.2    Jones, K.L.3    Ungerer, M.C.4
  • 28
    • 33846205559 scopus 로고    scopus 로고
    • Membrane biofouling in pilotscale membrane bioreactors (MBRs) treating municipal wastewater: impact of biofilm formation
    • Miura Y., Watanbe Y., Okabe S. Membrane biofouling in pilotscale membrane bioreactors (MBRs) treating municipal wastewater: impact of biofilm formation. Environ. Sci. Technol. 2007, 41:632-638.
    • (2007) Environ. Sci. Technol. , vol.41 , pp. 632-638
    • Miura, Y.1    Watanbe, Y.2    Okabe, S.3
  • 29
    • 0036133120 scopus 로고    scopus 로고
    • Enumeration of acetate-consuming bacteria by microautoradiography under oxygen and nitrate respiring conditions in activated sludge
    • Nielsen J., Nielsen P. Enumeration of acetate-consuming bacteria by microautoradiography under oxygen and nitrate respiring conditions in activated sludge. Water Res. 2002, 36:421-428.
    • (2002) Water Res. , vol.36 , pp. 421-428
    • Nielsen, J.1    Nielsen, P.2
  • 30
    • 0030741576 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria in activated sludge
    • Snaidr J., Amann R., Huber I., Ludwig W., Schleifer K. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol. 1997, 63:2884-2896.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2884-2896
    • Snaidr, J.1    Amann, R.2    Huber, I.3    Ludwig, W.4    Schleifer, K.5
  • 31
    • 8844277663 scopus 로고    scopus 로고
    • In situ characterization of microbial community in an A/O submerged membrane bioreactor with nitrogen removal
    • Sofia A., Liu W.T., Ong S.L., Ng W.J. In situ characterization of microbial community in an A/O submerged membrane bioreactor with nitrogen removal. Water Sci. Technol. 2004, 50:41-48.
    • (2004) Water Sci. Technol. , vol.50 , pp. 41-48
    • Sofia, A.1    Liu, W.T.2    Ong, S.L.3    Ng, W.J.4
  • 32
    • 0035068818 scopus 로고    scopus 로고
    • Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov
    • Song B., Palleroni N.J., Kerkhof L.J., Haggblom M.M. Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov. Int. J. Syst. Evol. Microbiol. 2001, 51:589-602.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 589-602
    • Song, B.1    Palleroni, N.J.2    Kerkhof, L.J.3    Haggblom, M.M.4
  • 33
    • 34249038014 scopus 로고    scopus 로고
    • Ecophysiology of abundant denitrifying bacteria in activated sludge
    • Thomsen T.R., Kong Y., Nielsen P.H. Ecophysiology of abundant denitrifying bacteria in activated sludge. FEMS Microbiol. Ecol. 2007, 60:370-382.
    • (2007) FEMS Microbiol. Ecol. , vol.60 , pp. 370-382
    • Thomsen, T.R.1    Kong, Y.2    Nielsen, P.H.3
  • 34
    • 0032960491 scopus 로고    scopus 로고
    • Phylogenetic analysis of an anaerobic, trichlorobenzene-transforming microbial consortium
    • von Wintzingerode F., Selent B., Hegemann W., Gobel U.B. Phylogenetic analysis of an anaerobic, trichlorobenzene-transforming microbial consortium. Appl. Environ. Microbiol. 1999, 65:283-286.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 283-286
    • von Wintzingerode, F.1    Selent, B.2    Hegemann, W.3    Gobel, U.B.4
  • 37
    • 4143111277 scopus 로고    scopus 로고
    • Microdiversity of phenol hydroxylase genes among phenol-degrading isolates of Alcaligenes sp. from an activated sludge system
    • Zhang X., Gao P., Chao Q., Wang L., Senior E., Zhao L. Microdiversity of phenol hydroxylase genes among phenol-degrading isolates of Alcaligenes sp. from an activated sludge system. FEMS Microbiol. Lett. 2004, 237:369-375.
    • (2004) FEMS Microbiol. Lett. , vol.237 , pp. 369-375
    • Zhang, X.1    Gao, P.2    Chao, Q.3    Wang, L.4    Senior, E.5    Zhao, L.6
  • 38
    • 0029031784 scopus 로고
    • Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov
    • Zhou J., Fries M., Chee-Sanford J. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. Int. J. Syst. Bacteriol. 1995, 45:500-506.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 500-506
    • Zhou, J.1    Fries, M.2    Chee-Sanford, J.3


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