Modelling the peroxisomal carbon leak during lipid mobilization in Arabidopsis

Biochemical Society Transactions

Volumn 38, Issue 5, 2010, Pages 1230-1233

  Hooks, Mark A ^a   Allen, Elizabeth ^a   Wattis, Jonathan A D ^b  

^a BANGOR UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF NOTTINGHAM   (United Kingdom)

Author keywords

Acetyl CoA; Carbon metabolism; Glyoxylate cycle; Kinetic model; Peroxisome; Seedling

Indexed keywords

ACETIC ACID; ACETYL COENZYME A; CARBON; GLYOXYLIC ACID;

ACN1 GENE; ARABIDOPSIS; GENE LOCUS; LIPID METABOLISM; NONHUMAN; PEROXISOME; PLANT GENE; PRIORITY JOURNAL; REVIEW;

ACETATES; ACETYL COENZYME A; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CARBON; COENZYME A LIGASES; LIPID METABOLISM; PEROXISOMES;

ARABIDOPSIS;

EID: 77957278149     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST0381230     Document Type: Review

References (44)

1. Finch-Savage, W.E. and Leubner-Metzger, G. (2006) Seed dormancy and the control of germination. New Phytol. 171, 501-523
2. Holdsworth, M.J., Finch-Savage, W.E., Grappin, P. and Job, D. (2008) Post-genomics dissection of seed dormancy and germination. Trends Plant Sci. 13, 7-13
3. Penfield, S., Graham, I. and Halliday, K. (2007) Control of seed dormancy and germination by environmental signals. Comp. Biochem. Physiol., Part A: Mol. Integr. Physiol. 146, S274-S274
4. Penfield, S., Pinfield-Wells, H.M. and Graham, I.A. (2006) Storage reserve mobilisation and seedling establishment in Arabidopsis. In the Arabidopsis Book, American Society of Plant Biologists, Rockville, doi:10.1199/tab.0100, http://www.aspb.org/publications/arabidopsis
5. Pritchard, S.L., Charlton, W.L., Baker, A. and Graham, I.A. (2002) Germination and storage reserve mobilization are regulated independently in Arabidopsis. Plant J. 31, 639-647
6. Holman, T.J., Jones, P.D., Russell, L., Medhurst, A., Tomas, S.U., Talloji, P., Marquez, J., Schmuths, H., Tung, S.A., Taylor, I. et al. (2009) The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 106, 4549-4554
7. Goepfert, S. and Poirier, Y. (2007) β-Oxidation in fatty acid degradation and beyond. Curr. Opin. Plant Biol. 10, 245-251
8. Pracharoenwattana, I. and Smith, S.M. (2008) When is a peroxisome not a peroxisome? Trends Plant Sci. 13, 522-525
9. Baker, A., Graham, I.A., Holdsworth, M., Smith, S.M. and Theodoulou, F.L. (2006) Chewing the fat: β-oxidation in signalling and development. Trends Plant Sci. 11, 124-132 (Pubitemid 43376142)
10. Graham, I.A. (2008) Seed storage oil mobilization. Annu. Rev. Plant Biol. 59, 115-142
11. Poirier, Y., Antonenkov, V.D., Glumoff, T. and Hiltunen, J.K. (2006) Peroxisomal β-oxidation: a metabolic pathway with multiple functions. Biochim. Biohys. Acta 1763, 1413-1426
12. Penfield, S., Li, Y., Gilday, A.D., Graham, S. and Graham, I.A. (2006) Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm. Plant Cell 18, 1887-1899
13. Hayashi, M., Toriyama, K., Kondo, M. and Nishimura, M. (1998) 2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid β-oxidation. Plant Cell 10, 183-195
14. Germain, V., Rylott, E.L., Larson, T.R., Sherson, S.M., Bechtold, N., Carde, J.P., Bryce, J.H., Graham, I.A. and Smith, S.M. (2001) Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid β-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings. Plant J. 28, 1-12
15. Rylott, E.L., Rogers, C.A., Gilday, A.D., Edgell, T., Larson, T.R. and Graham, I.A. (2003) Arabidopsis mutants in short- and medium-chain acyl-CoA oxidase activities accumulate acyl-CoAs and reveal that fatty acid β-oxidation is essential for embryo development. J. Biol. Chem. 278, 21370-21377
16. Rylott, E.L., Eastmond, P.J., Gilday, A.D., Slocombe, S.P., Larson, T.R., Baker, A. and Graham, I.A. (2006) The Arabidopsis thaliana multifunctional protein gene (MFP2) of peroxisomal β-oxidation is essential for seedling establishment. Plant J. 45, 930-941
17. Pracharoenwattana, I., Cornah, J.E. and Smith, S.M. (2005) Arabidopsis peroxisomal citrate synthase is required for fatty acid respiration and seed germination. Plant Cell 17, 2037-2048
18. Pracharoenwattana, I., Cornah, J.E. and Smith, S.M. (2007) Arabidopsis peroxisomal malate dehydrogenase functions in β-oxidation but not in the glyoxylate cycle. Plant J. 50, 381-390
19. To, J.P., Reiter, W.D. and Gibson, S.I. (2002) Mobilization of seed storage lipid by Arabidopsis seedlings is retarded in the presence of exogenous sugars. BMC Plant Biol. 2, 4
20. Martin, T., Oswald, O. and Graham, I.A. (2002) Arabidopsis seedling growth, storage lipid mobilization, and photosynthetic gene expression are regulated by carbon:nitrogen availability. Plant Physiol. 128, 472-481
21. Graham, I.A., Li, Y. and Larson, T.R. (2002) Acyl-CoA measurements in plants suggest a role in regulating various cellular processes. Biochem. Soc. Trans. 30, 1095-1099
22. Maeda, I., Delessert, S., Hasegawa, S., Seto, Y., Zuber, S. and Poirier, Y. (2006) The peroxisomal acyl-CoA thioesterase Pte1p from Saccharomyces cerevisiae is required for efficient degradation of short straight chain and branched chain fatty acids. J. Biol. Chem. 281, 11729-11735
23. Oliver, D.J., Nikolau, B.J. and Wurtele, E.S. (2009) Acetyl-CoA: life at the metabolic nexus. Plant Sci. 176, 597-601
24. Fatland, B.L., Nikolau, B.J. and Wurtele, E.S. (2005) Reverse genetic characterization of cytosolic acetyl-CoA generation by ATP-citrate lyase in Arabidopsis. Plant Cell 17, 182-203
25. Runquist, M. and Kruger, N.J. (1999) Control of gluconeogenesis by isocitrate lyase in endosperm of germinating castor bean seedlings. Plant J. 19, 423-431 (Pubitemid 129621615)
26. Eastmond, P.J., Germain, V., Lange, P.R., Bryce, J.H., Smith, S.M. and Graham, I.A. (2000) Postgerminative growth and lipid catabolism in oilseeds lacking the glyoxylate cycle. Proc. Natl. Acad. Sci. U.S.A. 97, 5669-5674
27. Eastmond, P.J. and Graham, I.A. (2001) Re-examining the role of the glyoxylate cycle in oilseeds. Trends Plant Sci. 6, 72-77
28. Eastmond, P.J. (2004) Glycerol-insensitive Arabidopsis mutants: gli1 seedlings lack glycerol kinase, accumulate glycerol and are more resistant to abiotic stress. Plant J. 37, 617-625
29. Hooks, M.A., Turner, J.E., Murphy, E.C. and Graham, I.A. (2004) Acetate non-utilizing mutants of Arabidopsis: evidence that organic acids influence carbohydrate perception in germinating seedlings. Mol. Genet. Genomics 271, 249-256
30. Poolman, M.G., Assmus, H.E. and Fell, D.A. (2004) Applications of metabolic modelling to plant metabolism. J. Exp. Bot. 55, 1177-1186
31. Snoep, J.L. (2005) The Silicon Cell initiative: working towards a detailed kinetic description at the cellular level. Curr. Opin. Biotechnol. 16, 336-343
32. Sweetlove, L.J., Fell, D. and Fernie, A.R. (2008) Getting to grips with the plant metabolic network. Biochem. J. 409, 27-41
33. Allen, E., Moing, A., Ebbels, T.M.D., Maucourt, M., Tomos, A.D., Rolin, D. and Hooks, M.A. (2010) Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Syst. Biol. 4, 62
34. Bender-Machado, L., Bauerlein, M., Carrari, F., Schauer, N., Lytovchenko, A., Gibon, Y., Kelly, A.A., Loureiro, M., Muller-Rober, B., Willmitzer, L. and Fernie, A.R. (2004) Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis. Plant Mol. Biol. 55, 645-662
35. Lin, M. and Oliver, D.J. (2008) The role of acetyl-coenzyme A synthetase in Arabidopsis. Plant Physiol. 147, 1822-1829
36. Turner, J.E., Greville, K., Murphy, E.C. and Hooks, M.A. (2005) Characterization of Arabidopsis fluoroacetate-resistant mutants reveals the principal mechanism of acetate activation for entry into the glyoxylate cycle. J. Biol. Chem. 280, 2780-2787
37. Hooks, M.A., Turner, J.E., Murphy, E.C., Johnston, K.A., Burr, S. and Jaroslawski, S. (2007) The Arabidopsis ALDP protein homologue COMATOSE is instrumental in peroxisomal acetate metabolism. Biochem. J. 406, 399-406
38. Hooks, M.A., Kellas, F. and Graham, I.A. (1999) Long-chain acyl-CoA oxidases of Arabidopsis. Plant J. 20, 1-13
39. Rylott, E.L., Hooks, M.A. and Graham, I.A. (2001) Co-ordinate regulation of genes involved in storage lipid mobilization in Arabidopsis thaliana. Biochem. Soc. Trans. 29, 283-287
40. Holtman, W.L., Heistek, J.C., Mattem, K.A., Bakhuisen, R. and Douma, A.C. (1994) β-Oxidation of fatty-acids is linked to the glyoxylate cycle in the aleurone but not in the embryo of germinating barley. Plant Sci. 99, 43-53
41. Bao, X., Focke, M., Pollard, M. and Ohlrogge, J. (2000) Understanding in vivo carbon precursor supply for fatty acid synthesis in leaf tissue. Plant J. 22, 39-50
42. Mansfield, S.G. and Briarty, L.G. (1996) The dynamics of seedling and cotyledon cell development in Arabidopsis thaliana during reserve mobilization. Int. J. Plant Sci. 157, 280-295
43. Larson, T.R. and Graham, I.A. (2001) Technical Advance: a novel technique for the sensitive quantification of acyl CoA esters from plant tissues. Plant J. 25, 115-125
44. 1H-NMR analyses: application to plant genetics and functional genomics. Funct. Plant Biol. 31, 889-902