Long-term time series analysis of quantum dot encoded cells by deconvolution of the autofluorescence signal

Cytometry Part A

Volumn 77, Issue 10, 2010, Pages 925-932

  Brown, M Rowan ^a   Summers, Huw D ^b   Rees, Paul ^b   Chappell, Sally C ^a   Silvestre, Oscar F ^a   Khan, Imtiaz A ^a   Smith, Paul J ^a   Errington, Rachel J ^a  

^a CARDIFF UNIVERSITY   (United Kingdom)

^b SWANSEA UNIVERSITY   (United Kingdom)

Author keywords

Cell cycle; Flow cytometry; In silico modeling; Nano toxicity; Proliferation; Quantum dot; Systems biology

Indexed keywords

FLUORESCENT DYE; QUANTUM DOT;

ARTICLE; CHEMISTRY; FLOW CYTOMETRY; FLUORESCENCE; HUMAN; METABOLISM; METHODOLOGY; TUMOR CELL LINE;

CELL LINE, TUMOR; FLOW CYTOMETRY; FLUORESCENCE; FLUORESCENT DYES; HUMANS; QUANTUM DOTS;

EID: 77957252875     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.20936     Document Type: Article

References (20)

1. Wang H, Huang S. Mixture-model classification in DNA content analysis. Cytometry Part A 2007;71A:716-723.
2. Perry MBA, Lehman JM. Activities of SV40 T antigen necessary for the induction of tetraploid DNA content in permissive CV-1 cells. Cytometry 1998;31:251-259.
3. Darzynkiewicz Z, Gong J, Juan G, Ardelt B, Traganos F. Cytometry of cyclin proteins. Cytometry 1996;25:1-13.
4. Carbonari M, Mancaniello D, Tedesco T, Fiorilli M. Flow acetone-staining technique: A highly efficient procedure for the simultaneous analysis of DNA content, cell morphology, and immunophenotype by flow cytometry. Cytometry Part A 2008;73A:168-174.
5. Rabinovitch P. Practical Considerations for DNA Content and Cell Cycle Analysis. Clinical Flow Cytometry: Principles and Application. Baltimore: Williams and Wilkins; 1993.
6. Darzynkiewicz Z. The Cell Cycle: Application of Flow Cytometry in Studies of Cell Reproduction. Clinical Flow Cytometry: Principles and Application. Baltimore: Williams and Wilkins; 1993.
7. Resch-Genger U, Grabolle M, Cavaliere-Jaricot S, Nitschke R, Nann T. Quantum dots versus organic dyes as fluorescent labels. Nat Methods 2008;5:763-775.
8. Alivisatos AP. Semiconductor clusters: Nanocrystals, and quantum dots. Science 1996;271:933-937.
9. Summers HD, Errington RJ, Smith PJ, Chappell S, Rees P, Brown MR, Leary JF. Cell-population tracking using quantum dots in flow cytometry. SPIE Proc 2008;6865:68650L.
10. Errington RJ, Brown MR, Silvestre O, Njoh K, Chappell SC, Khan I, Rees P, Wilks S, Smith PJ, Summers HD. Single cell nanoparticle tracking to model cell cycle dynamics and compartmental inheritance. Cell Cycle 2010;9:121-130.
11. Brown M, Rees P, Wilks S, Summers H, Errington R, Njoh K, Chappell S, Smith P, Leary J. Computational simulation of optical tracking of cell populations using quantum dot fluorophores. Comput Methods Syst Biol 2007;LNBI 4695:96-105.
12. Hodgkin PD, Lee JH, Lyons AB. B cell differentiation and isotype switching is related to division cycle number. J Exp Med 1996;184:277-281.
13. Chance B, Cohen P, Jobsis F, Schoener B. Intracellular oxidation-reduction states in vivo: The microfluorometry of pyridine nucleotide gives a continuous measurement of the oxidation state. Science 1962;137:499-508.
14. White NS, Errington RJ. Fluorescence techniques for drug delivery research: Theory and practice. Adv Drug Deliv Rev 2005;57:17-42.
15. Storn R, Price K. Differential evolution. A simple and efficient heuristic for global optimization over continuous spaces. Journal of Global Optimization 1997;11(4):341-359.
16. Koji K, Shigeo H. Dynamic intracellular distribution of Notch during activation and asymmetric cell division revealed by functional fluorescent fusion proteins. Genes Genes to Cells 2010;15(7):749-759.
17. Corsetti JP, Sotirchos SV, Cox C, Cowles JW, Leary JF, Blumburg N. Correction of cellular autofluorescence in flow cytometry by mathematical modeling of cellular fluorescence. Cytometry 1988;9:539-547.
18. Watson JV. Proof without prejudice revisited: Immunofluorescence histogram analysis using cumulative frequency subtraction plus ratio analysis of means. Cytometry 2001;43:55-68.
19. Lampariello F, Antonella A. Complete mathematical modeling method for the analysis of immunofluorescence distributions composed of negative and weakly positive cells. Cytometry 1998;32:241-254.
20. Lampariello F. Ratio analysis of cumulatives for labeled cell quantification from immunofluorescence histograms derived from cells expressing low antigen levels. Cytometry Part A 2009;75A:665-674.