Text mining meets workflow: Linking U-compare with Taverna

Bioinformatics

Volumn 26, Issue 19, 2010, Pages 2486-2487

  Kano, Yoshinobu ^a   Dobson, Paul ^b   Nakanishi, Mio ^a   Tsujii, Jun'ichi ^a,b   Ananiadou, Sophia ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPUTER INTERFACE; DATA MINING; FACTUAL DATABASE; METHODOLOGY; WORKFLOW;

COMPUTATIONAL BIOLOGY; DATA MINING; DATABASES, FACTUAL; USER-COMPUTER INTERFACE; WORKFLOW;

EID: 77957228045     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq464     Document Type: Article

References (7)

1. Ananiadou, S. et al. (2010) Event extraction for systems biology by text mining the literature. Trends Biotechnol., 28, 381-390.
2. Ferrucci, D. et al. (2006) Towards an interoperability standard for text and multi-modal analytics. IBM Research Report, RC24122, W0611-188.
3. Hull, D. et al. (2006) Taverna: a tool for building and running workflows of services. Nucleic Acids Res., 34, W729-W732.
4. Kano, Y. et al. (2009) U-Compare: share and compare text mining tools with UIMA. Bioinformatics, 25, 1997-1998.
5. Krallinger, M. et al. (2008) Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biol., 9 (Suppl. 2), S8.
6. Miwa, M. et al. (2010) Event extraction with complex event classification using rich features. J. Bioinform. Comput. Biol., 8, 131-146.
7. Settles, B. (2005)ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics, 21, 3191-3192.