Conformational and dynamical properties of the isolated, three-dimensional single-and double-tethered polymer chain on an infinite surface

Macromolecular Theory and Simulations

Volumn 19, Issue 7, 2010, Pages 440-448

  Fritsche, Miriam ^a   Heermann, Dieter W ^a   Dutra, Mariana ^b   Cordeiro, Claudette E ^b  

^a INSTITUT FÜR THEORETISCHE PHYSIK   (Germany)

^b FLUMINENSE FEDERAL UNIVERSITY   (Brazil)

Author keywords

Biological applications of polymers; Biopolymers; Chromosomes; Computer modeling; Diffusion; Fluorescence; Imaging; Monte Carlo simulation

Indexed keywords

BIOLOGICAL APPLICATIONS OF POLYMER; COMPUTER MODELING; CONTOUR LENGTHS; DYNAMICAL PROPERTIES; GENOME PACKAGING; IMAGING; IMPENETRABLE SURFACES; MEAN SQUARE; MONTE CARLO SIMULATION; POLYMER CHAINS; TETHERED POLYMERS; VISUALISATION;

BIOMOLECULES; BIOPOLYMERS; CHROMOSOMES; COSMIC RAY DETECTORS; DIFFUSION; FLUORESCENCE; ION BEAMS; LINEAR TRANSFORMATIONS; MONTE CARLO METHODS; POLYMERS; VISUALIZATION;

COMPUTER SIMULATION;

EID: 77957202702     PISSN: 10221344     EISSN: 15213919     Source Type: Journal    
DOI: 10.1002/mats.201000025     Document Type: Article

References (42)

1. D. Napper, Polymeric Stabilization of colloidal Dispersions, 2nd edition, Academic Press, London, New York 1984.
2. L. Newnham, P. Jordan, B. Rockmill, G. S. Roeder, E. Hoffmann, Proc. Natl. Acad. Sci. USA 2010, 107, 781.
3. E. Toro, L. Shapiro, Cold Spring Harb Perspect Biol 2010, 2, 1.
4. S. Milner, Science 1991, 13, 905.
5. A. Halperin, M. Tirrell, T. Lodge, Advances in Polymer Science 1991, 100, 21.
6. S. T. Milner, T. A. Witten, M. E. Cates, Macromolecules 1988, 21, 2610.
7. P. G. de Gennes, Advances in Polymer Science 1980, 13, 1069.
8. H. S. Gulati, C. K. Hall, R. L. Jones, R. J. Spontak, J. Chem. Phys. 1996, 105, 7712.
9. R. L. Jones, R. J. Spontak, J. Chem. Phys. 1994, 101, 5179.
10. K. Shida, A. Kasuya, Y. Kawazoe, Physica A 2007, 382, 405.
11. J. Huang, W. Jiang, S. Han, Macromol. Theory Simul. 2001, 10, 339.
12. R. Reyes-Lamothe, X. Wang, D. Sherratt, Trends in Microbiology 2008, 16, 238.
13. I. Carmesin, K. Kremer, Macromolecules 1988, 21, 2819.
14. K. Binder, D. W. Heermann, Monte Carlo Simulation in Statistical Physics: An Introduction, 4th edition, Springer Verlag, Berlin, Heidelberg, New York 2002.
15. A. D. Sokal, Functional Integration: Basics and Applications, C. de Witt-Morette, P. Cartier, A. Folacci, 1st edition, Plenum, New York 1997.
16. P. G. de Gennes, Scaling concepts in polymer physics, 1th edition, Cornell University Press, Ithaca, London 1979.
17. W. Bruns, Macromol. Chem. Theory Simul. 1992, 1, 287.
18. G. Zifferer, J. Chem. Phys. 1998, 109, 3691.
19. O. Jagodzinski, E. Eisenriegler, K. Kremer, J. Phys. I 1992, 2, 2243.
20. J. W. Cannon, J. A. Aronovitz, P. Goldbart, J. Phys. I 1991, 1, 629.
21. G. Gaeta, Physics Letters A 1990, 151, 62.
22. E. Orlandini, M. C. Tesi, S. G. Whittington, D. W. Summers, E. J. Janse van Rensburg, J. Phys. A: Math. Gen. 1994, 27, 333.
23. E. J. Janse van Rensburg, D. W. Summers, E. Wassermann, S. G. Whittington, J. Phys. A: Math. Gen. 1992, 25, 6557.
24. G. A. Arteca, J. Math. Chem. 1992, 12, 37.
25. M. Brill, P. M. Diesinger, D. Heermann, arXiv:cond-mat/0507020v1, 2008.
26. G. A. Arteca, Biopolymers. 1993, 33, 1829.
27. J. Mateos-Langerak, M. Bohn, W. de Leeuw, O. Giromus, E. M. M. Manders, P. J. Verschure, M. H. G. Indemans, H. J. Gierman, D. W. Heermann, R. van Driel, et al. Proc. Natl. Acad. Sci. USA 2009, 106, 3812.
28. P. A. Wiggins, K. C. Cheveralls, J. S. Martin, R. Lintner, J. Kondev, Proc. Natl. Acad. Sci. USA 2010, 107, 4991.
29. P. Fraser, Current Opinion in Genetics & Development 2006, 16, 490.
30. J. Bode, H. Heng, S. Krawetz, C. Benham, Chromosome Res. 2003, 11, 435.
31. D. Marenduzzo, I. Faro-Trindade, P. R. Cook, Trends Genet. 2007, 23, 126.
32. J. Dekker, K. Rippe, M. Dekker, N. Kleckner, Science 2002, 15, 1306.
33. M. Simonis, P. Klous, E. Splinter, Y. Moshkin, R. Willemsen, et al., Nature Genetics 2006, 38, 1348.
34. J. Dostie, J. Dekker, Nature Protocols 2007, 2, 988.
35. E. Lieberman-Aiden, N. L. van Berkum, L. Williams, M. Imakaev, T. Ragoczy, et al. Science 326, 289. 2009.
36. M. Bohn, private communication 2010.
37. P. E. J. Rouse, J. Chem. Phys. 1953, 21, 1272.
38. W. F. Marshall, A. Straight, J. F. Marko, J. Swedlow, A. Dernburg, A. Belmont, A. W. Murray, D. A. Agard, J. W. Sedat Current Biology 1997, 7, 930.
39. J. R. Chubb, S. Boyle, P. Perry, W. A. Bickmore, Current Biology 2002, 12, 439.
40. A. Taddei, S. M. Gasser, Biochimica et Biophysica Acta 2004, 1677, 120.
41. L. Guelen, L. Pagie, E. Brasset, W. Meulemann, M. B. Faza, W. Talhout, B. H. Eussen, A. de Klein, L. Wessels, W. De Laat, B. van Steensel Nature 2008, 453, 948.
42. S. M. Parkhurst, private communication, 2010.