Transcriptional characterization of Salmonella TA100 in log and stationary phase: Influence of growth phase on mutagenicity of MX

Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis

Volumn 692, Issue 1-2, 2010, Pages 19-25

  Ward, William O ^a   Swartz, Carol D ^b   Hanley, Nancy M ^a   DeMarini, David M ^a  

^a U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

^b UNIVERSITY OF NORTH CAROLINA   (United States)

Author keywords

Growth phase; Microarray; Mutagenicity; MX; Salmonella

Indexed keywords

3 CHLORO 4 DICHLOROMETHYL 5 HYDROXY 2(5H) FURANONE; BACTERIAL PROTEIN; DRINKING WATER; FURANONE DERIVATIVE; LEXA PROTEIN; MUCA PROTEIN; MUCB PROTEIN; MUTAGENIC AGENT; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; RECA PROTEIN; RECN PROTEIN; RIBOSOME PROTEIN; UNCLASSIFIED DRUG;

AMES TEST; AMINO ACID METABOLISM; AMINO ACID TRANSPORT; ARTICLE; BACTERIAL GROWTH; BACTERIAL MEMBRANE; BACTERIAL STRAIN; CELL GROWTH; CELL SUSPENSION; CONTROLLED STUDY; CULTURE MEDIUM; ENERGY METABOLISM; GENE EXPRESSION; GENE FREQUENCY; GENE FUNCTION; GENE MUTATION; GENETIC TRANSCRIPTION; GROWTH CURVE; MICROARRAY ANALYSIS; MUTAGEN TESTING; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PROTEIN TRANSPORT; REVERTANT; SALMONELLA; SIGNAL TRANSDUCTION; UPREGULATION;

CELL CYCLE; FURANS; MICROARRAY ANALYSIS; MUTAGENICITY TESTS; SALMONELLA; TRANSCRIPTION, GENETIC; WATER POLLUTANTS, CHEMICAL;

SALMONELLA;

EID: 77957173688     PISSN: 00275107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mrfmmm.2010.07.010     Document Type: Article

References (29)

1. Maron D.M., Ames B.N. Revised methods for the Salmonella mutagenicity test. Mutat. Res. 1983, 113:173-215.
2. Tani T.H., Khodursky A., Blumenthal R.M., Brown P.O., Matthews R.G. Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:13471-13476.
3. Dong T., Schellhorn H.E. Control of RpoS in global gene expression of Escherichia coli in minimal media. Mol. Genet. Genomics 2009, 281:19-33.
4. Chang D.-E., Smalley D.J., Conway T. Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol. Microbiol. 2002, 45:289-306.
5. Bradley M.D., Beach M.B., de Koning A.P.J., Pratt T.S., Osuna R. Effects of Fis on Escherichia coli gene expression during different growth stages. Microbiology 2007, 153:2922-2940.
6. Durfee T., Hansen A.-M., Zhi H., Blattner R.R., Jin D.J. Transcription profiling of the stringent response in Escherichia coli. J. Bacteriol. 2008, 190:1084-1096.
7. Osuna R., Lienau D., Hughes K.T., Johnson R.C. Sequence, regulation, and function of fis in Salmonella typhimurium. J. Bacteriol. 1995, 177:2021-2032.
8. Kelly A., Goldberg M.D., Carroll R.K., Danino V., Hinton J.C.D., Dorman C.J. A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium. Microbiology 2004, 150:2037-2053.
9. Ward W.O., Swartz C.D., Porwollik S., Warren S.H., Hanley N.M., Knapp G.W., McClelland M., DeMarini D.M. Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella. BMC Bioinformatics 2007, 8:378.
10. Ward W.O., Swartz C.D., Hanley N.M., Whitaker H.W., Franzén R., DeMarini D.M. Mutagen structure and transcriptional response: induction of distinct transcriptional profiles in Salmonella TA100 by the drinking-water mutagen MX and its homologues. Environ. Mol. Mutagen. 2010, 51:69-79.
11. Porwollik S., Frye J., Florea L.D., Blackmer F., McClelland M. A nonredundant microarray of genes for two related bacteria. Nucleic Acids Res. 2003, 31:1869-1876.
12. Baldi P., Long A.D. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 2001, 17:509-519.
13. de Hoon M.J., Imoto S., Nolan J., Miyano S. Open source clustering software. Bioinformatics 2004, 20:1453-1454.
14. Gama-Castro S., Jiménez-Jacinto V., Peralta-Gil M., Santos-Zavaleta A., Peñaloza-Spindola M., Contreras-Moreira B., Segura-Salazar J., Muñiz-Rascado L., Martinez-Flores I., Salgado H., Bonavides-Martinez C., Abreu-Goodger C., Rodriguez-Penagos C., Miranda-Rios J., Morett E., Merino E., Huerta A., Treviño-Quintanilla L., Collado-Vides J. Regulon DB (Version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res. 2008, 36:D120-D124.
15. Postgate J. The Outer Reaches of Life 1994, Cambridge University, Press.
16. Hayes C.S., Low D.A. Signals of growth regulation in bacteria. Curr. Opin. Microbiol. 2009, 12:667-673.
17. Lange R., Hengge-Aronis R. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol. Microbiol. 1991, 5:49-59.
18. Ishihama A. Adaptation of gene expression in stationary phase bacteria. Curr. Opin. Genet. Dev. 1997, 7:582-588.
19. Kjelleberg S., Hermansson M., Marden P., Jones G.W. The transient phase between growth and nongrowth of heterotrophic bacteria, with emphasis on the marine environment. Annu. Rev. Microbiol. 1997, 41:25-49.
20. Song M., Kim H., Kim E., Shin M., Lee H., Hong Y., Rhee J., Yoon H., Ryu S., Lim H., Choy H. ppGpp-dependent stationary phase induction of genes on Salmonella pathogenicity island 1. J. Biol. Chem. 2004, 279:34183-34190.
21. Cock P.J.A., Whitworth D.E. Evolution of prokaryotic two-component system signaling pathways: gene fusions and fissions. Mol. Biol. Evol. 2007, 24:2355-2357.
22. Reeve C.A., Amy P.S., Matin A. Role of protein synthesis in the survival of carbon-starved Escherichia coli K-12. J. Bacteriol. 1984, 160:1041-1046.
23. Reeve C.A., Bockman A.T., Matin A. Role of protein degradation in the survival of carbon-starved Escherichia coli and Salmonella typhimurium. J. Bacteriol. 1984, 168:486-493.
24. Groat R.G., Schultz J.E., Zychlinsky E., Bockman A., Matin A. Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival. J. Bacteriol. 1986, 168:486-493.
25. Kolter R., Siegele D.A., Tormo A. The stationary phase of the bacterial life cycle. Annu. Rev. Microbiol. 1993, 47:855-874.
26. Elledge S.J., Walker G.C. The muc genes of pKM101 are induced by DNA damage. J. Bacteriol. 1983, 155:1306-1315.
27. 2B are responsible for their different mutagenic properties during bypass of a T-T cis-syn cyclobutane dimmer. J. Bacteriol. 2000, 182:2285-2291.
28. McDonald T.A., Komulainen H. Carcnogenicity of the chlorination disinfection by-product MX. J. Environ. Sci. Health C: Environ. Carcinogen. Ecotoxicol. Rev. 2005, 23:163-214.
29. King L.C., Hester S.D., Warren S.H., DeMarini D.M. Induction of abasic sites by the drinking-water mutagen MX in Salmonella TA100. Chem. Biol. Interact. 2009, 180:340-343.