Speciation and phylogeography of Opsariichthys bidens (Pisces: Cypriniformes: Cyprinidae) in China: Analysis of the cytochrome b gene of mtDNA from diverse populations

Zoological Studies

Volumn 48, Issue 4, 2009, Pages 569-583

  Li, Gao Yan ^a,b   Wang, Xu Zhen ^c   Zhao, Ya Hui ^a   Zhang, Jie ^a   Zhang, Chun Guang ^a   He, Shun Ping ^c  

^a INSTITUTE OF ZOOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c INSTITUTE OF HYDROBIOLOGY   (China)

Author keywords

Demographic history; Genetic divergence; Mismatch distribution analysis; Molecular clock; Neutrality test

Indexed keywords

EID: 77957144133     PISSN: 10215506     EISSN: 1810522X     Source Type: Journal    
DOI: None     Document Type: Article

References (56)

1. An Z, JE Kutzbach, WL Prell, SC Porter. 2001. Evolution of Asian monsoons and phased uplift of the Himalaya- Tibetan plateau since Late Miocene times. Nature 411: 62-66.
2. Aris-Brosou S, L Excoffier. 1996. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol. Biol. Evol. 13: 494-504.
3. Banarescu PM, BW Coad. 1991. Cyprinids of Eurasia. In IJ Windfield, JS Nelson, eds. Cyprinid fishes. Systematics, biology and exploitation. Fish and Fisheries. Series 3. London: Chapman & Hall.
4. Berrebi P, X Retif, F Fang, CG Zhang. 2006. Population structure and systematics of Opsariichthys bidens (Osteichthyes: Cyprinidae) in south-east China using a new nuclear marker: the introns (EPIC-PCR). Biol. J. Linnean Soc. 87: 155-166.
5. Brito RM, J Briolay, N Galtier, Y Bouvet, MM Coelho. 1997. Phylogenetic relationships within the genus Leuciscus (Pisces, Cyprinidae) in Portuguese fresh waters, based on mitochondrial DNA cytochrome b sequences. Mol. Phylogenet. Evol. 8: 435-442.
6. Burridge CP, D Craw, JM Waters. 2006. River capture, range expansion, and cladogenesis: the genetic signature of freshwater vicariance. Evol. Int. J. Organ. Evol. 60: 1038-1049.
7. Cantatore P, M Roberti, G Pesole, A Ludovico, F Milella, MN Gadaleta, C Saccone. 1994. Evolutionary analysis of cytochrome b sequences in some Perciformes: evidence for a slower rate of evolution than in mammals. J. Mol. Evol. 39: 589-597.
8. Chen Y. 1982. A revision of Opsariichthine cyprinid fishes. Oceanol. Limnol. Sin. 13: 293-299.
9. Chen Y. 1998. Fauna Sinica. Beijing, China: Science Press
10. Costedoat C, R Chappaz, B Barascud, O Guillard, A Gilles. 2006. Heterogeneous colonization pattern of European cyprinids, as highlighted by the dace complex (Teleostei: Cyprinidae). Mol. Phylogenet. Evol. 41: 127-148.
11. Doadrio I, JA Carmona. 2004. Phylogenetic relationships and biogeography of the genus Chondrostoma inferred from mitochondrial DNA sequences. Mol. Phylogenet. Evol. 33: 802-815.
12. Dowling TE, CA Tibbets, WL Minckley, GR Smith. 2002. Evolutionary relationships of the plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia 2002: 655-678.
13. Durand JD, PG Bianco, J Laroche, A Gilles. 2003. Insight into the origin of endemic Mediterranean ichthyofauna: phylogeography of Chondrostoma genus (Teleostei, Cyprinidae). J. Hered. 94: 315-328.
14. Esposti MD, S De Vries, M Crimi, A Ghelli, T Patarnello, A Meyer. 1993. Mitochondrial cytochrome b: evolution and structure of the protein. Biochim. Biophys. Acta 1143: 243-271.
15. Guindon S, O Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biol. 52: 696-704.
16. Guindon S, F Lethiec, P Duroux, O Gascuel. 2005. PHYML Online - a web server for fast maximum likelihoodbased phylogenetic inference. Nucleic Acids Res. 33: W557-W559.
17. Harpending HC. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum. Biol. 66: 591-600.
18. Howes GJ. 1991. Systematics and biogeography: an overview. In IJ Winfield, JS Nelson, eds. Cyprinid fishes. Systematics, biology and exploitation. London: Chapman & Hall.
19. Huelsenbeck JP, F Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
20. Johansson F. 2006. Body shape differentiation among mitochondrial-DNA lineages of Zacco platypus and Opsariichthys bidens (Cyprinidae) from the Chang Jiang and Xi Jiang river drainage areas in southern China. Acta Zool. Sin. 52: 948-953.
21. Ketmaier V, PG Bianco, M Cobolli, M Krivokapic, R Caniglia, E De Matthaeis. 2004. Molecular phylogeny of two lineages of Leuciscinae cyprinids (Telestes and Scardinius) from the peri-Mediterranean area based on cytochrome b data. Mol. Phylogenet. Evol. 32: 1061-1071.
22. Kumar S, K Tamura, M Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform. 5: 150-163.
23. Li G. 2007. Phylogeography and life history of the East Asia endemic cyprinid fish, Opsariichthys bidens Günther (Pisces: Cypriniformes). PhD dissertation, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
24. Lu G, EN Moriyama. 2004. Vector NTI, a balanced all-in-one sequence analysis suite. Brief Bioinform. 5: 378-388.
25. Machordom A, I Doadrio. 2001. Evidence of a Cenozoic Betic-Kabilian connection based on freshwater fish phylogeography (Luciobarbus, Cyprinidae). Mol. Phylogenet. Evol. 18: 252-263.
26. Mesquita N, B Hanfling, GR Carvalho, MM Coelho. 2005. Phylogeography of the cyprinid Squalius aradensis and implications for conservation of the endemic freshwater fauna of southern Portugal. Mol. Ecol. 14: 1939-1954.
27. Ministry of Geology and Mineral Resources"Nanling Project" Special Group. 1988. Nanling areal structure characters and stone & ore control structure studies. Beijing, China: Geology Press.
28. Nelson SJ. 2006. Fishes of the world. 4th ed. New York, USA: J Wiley.
29. Perdices A, MM Coelho. 2006. Comparative phylogeography of Zacco platypus and Opsariichthys bidens (Teleostei, Cyprinidae) in China based on cytochrome b sequences. J. Zool. Systemat. Evol. Res. 44: 330-338.
30. Perdices A, C Cunha, MM Coelho. 2004. Phylogenetic structure of Zacco platypus (Teleostei, Cyprinidae) populations on the upper and middle Chang Jiang (=Yangtse) drainage inferred from cytochrome b sequences. Mol. Phylogenet. Evol. 31: 192-203.
31. Perdices A, D Sayanda, MM Coelho. 2005. Mitochondrial diversity of Opsariichthys bidens (Teleostei, Cyprinidae) in three Chinese drainages. Mol. Phylogenet. Evol. 37: 920-927.
32. Posada D, KA Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
33. Rogers AR, H Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552-569.
34. Ronquist F, JP Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
35. Sambrook J, D Russell. 2004. Molecular cloning (3-volume set): a laboratory manual. New York: Cold Spring Harbor Laboratory Press.
36. Schmidat TR, JR Gold. 1993. Complete sequence of the mitochondrial cytochrome b gene in the cherryfin shiner, Lythrurus roseipinnis (Teleostei: Cyprinidae). Copeia 3: 880-883.
37. Schneider S, D Roessli, L Excoffier. 2000. Arlequin vers. 2.000: a software for population genetics data analysis. Geneva, Switzerland: Genetics and Biometry Laboratory, Department of Anthropology and Ecology, Univ. of Geneva.
38. Shi Y, J Li, B Li, T Yao, S Wang, S Li, Z Cui, F Wang, B Pan, X Fang, Q Zhang. 1999. Uplift of the Qinghai-Xizang (Tibetan) plateau and East Asia environmental change during late Cenozoic. Acta Geogr. Sin. 54: 10-21.
39. Shu L, X Zhou, P Deng, X Yu. 2006. Principal geological features of Nanling tectonic belt, South China. Geol. Rev. 52: 251-265.
40. Su J, F Qiu, W Zhou, C Xie, W Wang, C Chen. 1993. Age, growth, reproductive biology and food habitat of Opsariichthys bidens in Sandaohe Reservoir. Reservoir Fish, pp. 15-18.
41. Su R, J Yang, G Cui. 2001. The nominal invalidity of the cyprinid genus, Parasinilabeo, with descriptions of a new genus and species. Zool. Stud. 40: 134-140.
42. Sun H, D Zheng. 1998. Forming and development of Qinghai-Tibetan Plateau. GuangZhou, China: Guangdong Science and Technology Publisher.
43. Swofford DL. 1998. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Vers. 4. Sunderland, MA: Sinauer Associates.
44. Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
45. Tamura K, M Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
46. Thompson JD, TJ Gibson, F Plewniak, F Jeanmougin, DG Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
47. Wang D. 2005a. Species diversity and zoogeographical analysis of freshwater fishes in Guangxi Zhuang Autonomous Region, China. Master,s thesis. Institute of Zoology. Chinese Academy of Sciences, Beijing, China.
48. Wang HY, CF Wang, SY Du, SC Lee. 2007. New insights on molecular systematics of opsariichthines based on cytochrome b sequencing. J. Fish Biol. 71 (Supplement A): 18-32.
49. Wang J, G Li, J Wang. 1981. The early Tertiary fossil fishes From SanShui and its adjacent basin. Beijing, China: Guangdong Science Press.
50. Wang X. 2005b. Molecular phylogeny of the East Asian cyprinids (Pisces: Cypriniformes). PhD thesis. Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China.
51. Wright S. 1931. Evolution in Mendelian populations. Genetics 16: 97-159.
52. Wu XW, WX Cao, BL Yi. 1964. Cyprinids fishes in China. Shanghai, China: Shanghai Scientific and Technical Publishers.
53. Xiao W, Y Zhang, H Liu. 2001. Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): taxonomy, biogeography, and coevolution of a special group restricted in East Asia. Mol. Phylogenet. Evol. 18: 163-173.
54. Zane L, S Marcato, L Bargelloni, E Bortolotto, C Papetti, M Simonato, V Varotto, T Patarnello. 2006. Demographic history and population structure of the Antarctic silverfish Pleuragramma antarcticum. Mol. Ecol. 15: 4499-4511.
55. Zardoya R, I Doadrio. 1999. Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. J. Mol. Evol. 49: 227-237.
56. Zhong F. 1990. Prel iminar y s tudy of geologi cal geomorphological conditions of Ling Canal. Carsologica Sin. 9: 88-93.