메뉴 건너뛰기




Volumn 49, Issue 5, 2010, Pages 657-668

Comparative study of genetic variability of AAT and CT/GT microsatellites in staghorn coral, Acropora (Scleractinia: Acroporidae)

Author keywords

Acropora; Dinucleotide; Microsatellite; Mutation rate; Trinucleotide

Indexed keywords

ACROPORA; ACROPORA DIGITIFERA; ACROPORA MURICATA; ACROPORIDAE; ANTHOZOA; SCLERACTINIA;

EID: 77957141631     PISSN: 10215506     EISSN: 1810522X     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (12)

References (53)
  • 2
    • 4644243715 scopus 로고    scopus 로고
    • Does heterozygosity estimate inbreeding in real populations?
    • Balloux F; W Amos; T Coulson. 2004. Does heterozygosity estimate inbreeding in real populations? Mol Ecol. 13: 3021-3031
    • (2004) Mol Ecol , vol.13 , pp. 3021-3031
    • Balloux, F.1    Amos, W.2    Coulson, T.3
  • 3
    • 67649861376 scopus 로고    scopus 로고
    • Nine novel, polymorphic microsatellite markers for the study of threatened Caribbean acroporid corals
    • Baums IB, MK Devlin-Durante, L Brown, JH Pizon. 2009. Nine novel, polymorphic microsatellite markers for the study of threatened Caribbean acroporid corals. Mol. Ecol. Resources. 9: 1155-1158.
    • (2009) Mol. Ecol. Resources , vol.9 , pp. 1155-1158
    • Baums, I.B.1    Devlin-Durante, M.K.2    Brown, L.3    Pizon, J.H.4
  • 4
    • 17644380002 scopus 로고    scopus 로고
    • Mendelian microsatellite loci for the Caribbean coral Acropora palmata
    • Baums IB, CR Hughes, ME Hellberg. 2005a. Mendelian microsatellite loci for the Caribbean coral Acropora palmata. Mar. Ecol.-Prog. Ser. 288: 115-127.
    • (2005) Mar. Ecol.-Prog. Ser , vol.288 , pp. 115-127
    • Baums, I.B.1    Hughes, C.R.2    Hellberg, M.E.3
  • 5
    • 14844339215 scopus 로고    scopus 로고
    • Regionally isolated populations of an imperiled Caribbean coral, Acropora palmata
    • Baums IB, MW Miller, ME Hellberg. 2005b. Regionally isolated populations of an imperiled Caribbean coral, Acropora palmata. Mol. Ecol. 14: 1377-1390.
    • (2005) Mol. Ecol , vol.14 , pp. 1377-1390
    • Baums, I.B.1    Miller, M.W.2    Hellberg, M.E.3
  • 6
    • 33845307595 scopus 로고    scopus 로고
    • Geographic variation in clonal structure in a reef-building Caribbean coral, Acropora palmata
    • Baums IB, MW Miller, ME Hellberg. 2006. Geographic variation in clonal structure in a reef-building Caribbean coral, Acropora palmata. Ecol. Monogr. 76: 503-519.
    • (2006) Ecol. Monogr , vol.76 , pp. 503-519
    • Baums, I.B.1    Miller, M.W.2    Hellberg, M.E.3
  • 8
    • 58849137067 scopus 로고    scopus 로고
    • Comparative analyses of coding and noncoding DNA regions indicate that Acropora spp. (Anthozoa; Scleractina) possess a similar evolutionary tempo of nuclear vs. mitochondrial genomes in plants
    • Chen IP, CY Tang, CY Chiou, JH Hsui, NV Wei, CC Wallace et al. 2009. Comparative analyses of coding and noncoding DNA regions indicate that Acropora spp. (Anthozoa; Scleractina) possess a similar evolutionary tempo of nuclear vs. mitochondrial genomes in plants. Mar. Biotech. 11: 141-153.
    • (2009) Mar. Biotech , vol.11 , pp. 141-153
    • Chen, I.P.1    Tang, C.Y.2    Chiou, C.Y.3    Hsui, J.H.4    Wei, N.V.5    Wallace, C.C.6
  • 9
    • 0036860522 scopus 로고    scopus 로고
    • Limited hybridization between Quercus lobata and Quercus douglasii (Fragaceae) in a mixed stand in central coastal California
    • Craft KJ, MV Ashley, WD Koenig. 2002. Limited hybridization between Quercus lobata and Quercus douglasii (Fragaceae) in a mixed stand in central coastal California. Am. J. Bot. 89: 1792-1798.
    • (2002) Am. J. Bot , vol.89 , pp. 1792-1798
    • Craft, K.J.1    Ashley, M.V.2    Koenig, W.D.3
  • 10
    • 0032840798 scopus 로고    scopus 로고
    • Rate and directionality of mutations and effects of allele size constraints at anonymous, gene-associated, and disease-causing trinucleotide loci
    • Deka R, S Guangyun, D Smelser, Y Zhong, M Kimmel, R Chakraborty. 1999. Rate and directionality of mutations and effects of allele size constraints at anonymous, gene-associated, and disease-causing trinucleotide loci. Mol. Biol. Evol. 16: 1166-1177.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1166-1177
    • Deka, R.1    Guangyun, S.2    Smelser, D.3    Zhong, Y.4    Kimmel, M.5    Chakraborty, R.6
  • 11
    • 0037346501 scopus 로고    scopus 로고
    • MICROSATELLITE ANALYSER (MSA): A platform independent analysis tool for large microsatellite data sets
    • Dieringer D, C Schlotterer. 2003. MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets. Mol. Ecol. Notes 3: 167-169.
    • (2003) Mol. Ecol. Notes , vol.3 , pp. 167-169
    • Dieringer, D.1    Schlotterer, C.2
  • 12
    • 0036346161 scopus 로고    scopus 로고
    • Non-Mendelian inheritance revealed in a genetic analysis of sexual progeny of Phytophthora cinnamomi with microsatellite markers
    • Dobrowolski MP, IC Tommerup, HD Blakeman, PA O'Brien.2002. Non-Mendelian inheritance revealed in a genetic analysis of sexual progeny of Phytophthora cinnamomi with microsatellite markers. Fungal Genet. Biol. 35: 197-212.
    • (2002) Fungal Genet. Biol , vol.35 , pp. 197-212
    • Dobrowolski, M.P.1    Tommerup, I.C.2    Blakeman, H.D.3    O'Brien, P.A.4
  • 13
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin vers. 3.0: An integrated software package for population genetics data analysis
    • Excoffer L, G Laval, S Schneider. 2005. Arlequin vers. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
    • (2005) Evol. Bioinform. Online , vol.1 , pp. 47-50
    • Excoffer, L.1    Laval, G.2    Schneider, S.3
  • 14
    • 34748829153 scopus 로고    scopus 로고
    • Gene flow in Duautia arborea and D. ciliolata: The role of ecology and isolation by distance in maintaining species boundaries despite ongoing hybridization
    • Friar EA, JM Cruse-Sanders, ME Mcglaughlin. 2007. Gene flow in Duautia arborea and D. ciliolata: the role of ecology and isolation by distance in maintaining species boundaries despite ongoing hybridization. Mol. Ecol. 16: 4028-4038.
    • (2007) Mol. Ecol , vol.16 , pp. 4028-4038
    • Friar, E.A.1    Cruse-Sanders, J.M.2    McGlaughlin, M.E.3
  • 15
    • 77956278356 scopus 로고    scopus 로고
    • Short review: Molecular phylogenetic analyses of reef corals
    • Fukami H. 2008. Short review: molecular phylogenetic analyses of reef corals. Galaxea 10: 47-55.
    • (2008) Galaxea , vol.10 , pp. 47-55
    • Fukami, H.1
  • 16
    • 0038115419 scopus 로고    scopus 로고
    • Ecological and genetic aspects of reproductive isolation by different spawning times in Acropora corals
    • Fukami H, M Omori, K Shimoike, T Hayashibara, M Hatta.2003. Ecological and genetic aspects of reproductive isolation by different spawning times in Acropora corals. Mar. Biol. 142: 679-684.
    • (2003) Mar. Biol , vol.142 , pp. 679-684
    • Fukami, H.1    Omori, M.2    Shimoike, K.3    Hayashibara, T.4    Hatta, M.5
  • 17
    • 0033826127 scopus 로고    scopus 로고
    • An evaluation of chelex-based DNA purifcation protocols for the typing of lactic acid bacteria
    • Giraffa G, L Rossetti, E Neviani. 2000. An evaluation of chelex-based DNA purifcation protocols for the typing of lactic acid bacteria. J. Microbiol. Meth. 42: 175-184.
    • (2000) J. Microbiol. Meth , vol.42 , pp. 175-184
    • Giraffa, G.1    Rossetti, L.2    Neviani, E.3
  • 19
    • 0028085643 scopus 로고
    • Evaluation of 13 short tandem repeat loci for use in personal identifcation applications
    • Hammond HA, L Jin, Y Zhong, CT. Caskey, R. Chakraborty, 1994. Evaluation of 13 short tandem repeat loci for use in personal identifcation applications. Am. J. Hum. Genet. 55: 175-189.
    • (1994) Am. J. Hum. Genet , vol.55 , pp. 175-189
    • Hammond, H.A.1    Jin, L.2    Zhong, Y.3    Caskey, C.T.4    Chakraborty, R.5
  • 21
    • 43949139240 scopus 로고    scopus 로고
    • Microsatellite loci isolated from the scleractinian coral, Acropora nobilis
    • Isomura N, M Hidaka. 2008. Microsatellite loci isolated from the scleractinian coral, Acropora nobilis. Mol. Ecol. Resources 8: 587-589.
    • (2008) Mol. Ecol. Resources , vol.8 , pp. 587-589
    • Isomura, N.1    Hidaka, M.2
  • 22
    • 0034766129 scopus 로고    scopus 로고
    • Assessment of genetic variation and differentiation of hop genotypes by microsatellite and AFLP markers
    • Jakse J, K Kindlhofer, B Javornik. 2001. Assessment of genetic variation and differentiation of hop genotypes by microsatellite and AFLP markers. Genome 44: 773-782.
    • (2001) Genome , vol.44 , pp. 773-782
    • Jakse, J.1    Kindlhofer, K.2    Javornik, B.3
  • 23
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, K Tamura, M Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5: 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 24
    • 0033841482 scopus 로고    scopus 로고
    • Evolution of microsatellite alleles in four species of mice (genus Apodemus)
    • Makova KD, A Nekrutenko, RJ Baker. 2000. Evolution of microsatellite alleles in four species of mice (genus Apodemus). J. Mol. Evol. 51: 166-172.
    • (2000) J. Mol. Evol , vol.51 , pp. 166-172
    • Makova, K.D.1    Nekrutenko, A.2    Baker, R.J.3
  • 27
    • 0037744566 scopus 로고    scopus 로고
    • Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora
    • Márquez LM, DJ Miller, JB MacKenzie, MJH van Oppen. 2003. Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Mol. Biol. Evol. 20: 1077-1086.
    • (2003) Mol. Biol. Evol , vol.20 , pp. 1077-1086
    • Márquez, L.M.1    Miller, D.J.2    Mackenzie, J.B.3    Oppen, M.J.H.V.4
  • 29
    • 0343962224 scopus 로고    scopus 로고
    • Species status of hybridizing oaks
    • Muir G., C.C. Fleming, C. Schlötterer. 2000. Species status of hybridizing oaks. Nature 405: 1016.
    • (2000) Nature , vol.405 , pp. 1016
    • Muir, G.1    Fleming, C.C.2    Schlötterer, C.3
  • 30
    • 0035146034 scopus 로고    scopus 로고
    • Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L
    • Muir G. CC Fleming CSchlötterer. 2001. Three divergent rDNA clusters predate the species divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L. Molecular Biology and Evolution 18: 112-119
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 112-119
    • Muir, G.1    Fleming, C.C.2    Schlötterer, C.3
  • 31
    • 65949098990 scopus 로고    scopus 로고
    • Novel and cross-species amplifiable microsatellite markers in two Acropora species. Plankt
    • Nakajima Y, A Nishikawa, A Iguchi, K Sakai. 2009a. Novel and cross-species amplifiable microsatellite markers in two Acropora species. Plankt. Benthos Res. 4: 38-41.
    • (2009) Benthos Res , vol.4 , pp. 38-41
    • Nakajima, Y.1    Nishikawa, A.2    Iguchi, A.3    Sakai, K.4
  • 32
    • 65949116594 scopus 로고    scopus 로고
    • Genetic connectivity in the broadcast-spawning coral Acropora digitifera analyzed by microsatellite markers on the Sekisei Reef, southwestern Japan
    • Nakajima Y, A Nishikawa, N Isomura, A Iguchi, K Sakai. 2009b. Genetic connectivity in the broadcast-spawning coral Acropora digitifera analyzed by microsatellite markers on the Sekisei Reef, southwestern Japan. Zool. Sci. 26: 209-215.
    • (2009) Zool. Sci , vol.26 , pp. 209-215
    • Nakajima, Y.1    Nishikawa, A.2    Isomura, N.3    Iguchi, A.4    Sakai, K.5
  • 33
    • 0030904506 scopus 로고    scopus 로고
    • A likelihood approach to populations samples of microsatellite alleles
    • Nielsen R. 1997. A likelihood approach to populations samples of microsatellite alleles. Genetics 146: 711-716.
    • (1997) Genetics , vol.146 , pp. 711-716
    • Nielsen, R.1
  • 34
    • 0009520474 scopus 로고    scopus 로고
    • Variation in the ribosomal internal transcribed spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): Patterns of variation consistent with reticulate evolution
    • Odorico DM, DJ Miller. 1997. Variation in the ribosomal internal transcribed spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): patterns of variation consistent with reticulate evolution. Mol. Biol. Evol. 14: 465-473.
    • (1997) Mol. Biol. Evol , vol.14 , pp. 465-473
    • Odorico, D.M.1    Miller, D.J.2
  • 35
    • 0000262278 scopus 로고
    • GenePop (vers. 1.2): A population genetics software for exact test and ecumenicism
    • Raymond M, F Rousset. 1995. GenePop (vers. 1.2): a population genetics software for exact test and ecumenicism. J. Hered. 86: 248-249.
    • (1995) J. Hered , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 36
    • 33646510871 scopus 로고    scopus 로고
    • Why are there so few genetic markers available for coral population analyses?
    • Ridgway T, RD Gates. 2006. Why are there so few genetic markers available for coral population analyses? Symbiosis 41: 1-7.
    • (2006) Symbiosis , vol.41 , pp. 1-7
    • Ridgway, T.1    Gates, R.D.2
  • 38
    • 0036897723 scopus 로고    scopus 로고
    • Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
    • Shearer TL, MJH Van Oppen, SL Romano, G Worheide. 2002. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol. Ecol. 11: 2475-2487.
    • (2002) Mol. Ecol , vol.11 , pp. 2475-2487
    • Shearer, T.L.1    Oppen, M.J.H.V.2    Romano, S.L.3    Worheide, G.4
  • 40
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Survey and analysis
    • Toth G, Z Gaspari, J Jurka. 2000. Microsatellites in different eukaryotic genomes: survey and analysis. Gen. Res. 10: 967-981.
    • (2000) Gen. Res , vol.10 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 41
    • 34248185079 scopus 로고    scopus 로고
    • Te n microsatellite loci for the reef-building coral Acropora millepora (Cnidaria, Scleractinia) from the Great Barrier Reef, Australia
    • van Oppen MJH, JN Underwood, AN Muirhead, L Peplow. 2007. Te n microsatellite loci for the reef-building coral Acropora millepora (Cnidaria, Scleractinia) from the Great Barrier Reef, Australia. Mol. Ecol. Notes 7: 436-438.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 436-438
    • Oppen, M.J.H.V.1    Underwood, J.N.2    Muirhead, A.N.3    Peplow, L.4
  • 42
    • 0033593441 scopus 로고    scopus 로고
    • Atypically low rate of cytochrome b evolution in the scleractinian coral genus Acropora
    • van Oppen MJH, BL Willis, DJ Miller. 1999. Atypically low rate of cytochrome b evolution in the scleractinian coral genus Acropora. Proc. R. Soc. Lond. B 266: 179-183.
    • (1999) Proc. R. Soc. Lond. B , vol.266 , pp. 179-183
    • Oppen, M.J.H.V.1    Willis, B.L.2    Miller, D.J.3
  • 43
    • 0035993704 scopus 로고    scopus 로고
    • Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: Evidence for natural hybridization and semi-permeable species boundaries in corals
    • van Oppen MJH, BL Willis, T Van Rheede, DJ Miller. 2002. Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Mol. Ecol. 11: 1363-1376.
    • (2002) Mol. Ecol , vol.11 , pp. 1363-1376
    • Oppen, M.J.H.V.1    Willis, B.L.2    Rheede, T.V.3    Miller, D.J.4
  • 44
    • 0033824430 scopus 로고    scopus 로고
    • Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses
    • van Oppen MJH, BL Willis, HWJAV Vugt, DJ Miller. 2000. Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses. Mol. Ecol. 9: 1363-1373.
    • (2000) Mol. Ecol , vol.9 , pp. 1363-1373
    • Oppen, M.J.H.V.1    Willis, B.L.2    Vugt, H.W.J.A.V.3    Miller, D.J.4
  • 45
    • 4344645239 scopus 로고    scopus 로고
    • Testing the utility of internally transcribed spacer sequences in coral phylogenetics
    • Vollmer SV, SR Palumbi. 2004. Testing the utility of internally transcribed spacer sequences in coral phylogenetics. Mol. Ecol. 13: 2763-2772.
    • (2004) Mol. Ecol , vol.13 , pp. 2763-2772
    • Vollmer, S.V.1    Palumbi, S.R.2
  • 46
    • 77957146932 scopus 로고    scopus 로고
    • Staghorn corals of the world: A revision of the coral genus Acropora (Scleractinia; Astrocoeniina; Acroporidae)
    • Collingwood, Australia: CISRO Publishing
    • Wallace C. 1999. Staghorn corals of the world: a revision of the coral genus Acropora (Scleractinia; Astrocoeniina; Acroporidae) worldwide, with emphasis on morphology phylogeny and biogeography. Collingwood, Australia: CISRO Publishing.
    • (1999) Worldwide, With Emphasis On Morphology Phylogeny and Biogeography
    • Wallace, C.1
  • 47
    • 0028191479 scopus 로고
    • Systematics of the coral genus Acropora-implications of new biological findings for species concepts
    • Wallace CC, BL Willis. 1994. Systematics of the coral genus Acropora-implications of new biological findings for species concepts. Annu. Rev. Ecol. Syst. 25: 237-262.
    • (1994) Annu. Rev. Ecol. Syst , vol.25 , pp. 237-262
    • Wallace, C.C.1    Willis, B.L.2
  • 48
    • 0032219756 scopus 로고    scopus 로고
    • Revision of the coral genus Acropora (Scleractinia: Astrocoeniina: Acroporidae) in Indonesia
    • Wallace CC, J Wolstenholme. 1998. Revision of the coral genus Acropora (Scleractinia: Astrocoeniina: Acroporidae) in Indonesia. Zool. J. Linn. Soc. 123: 199-384.
    • (1998) Zool. J. Linn. Soc , vol.123 , pp. 199-384
    • Wallace, C.C.1    Wolstenholme, J.2
  • 49
    • 65349133124 scopus 로고    scopus 로고
    • Microsatellite characterization and marker development from public EST and WGS databases in the reef-building coral Acropora millepora (Cnidaria, Anthozoa, Scleractinia)
    • Wang S, L Zhang, M Matz. 2009. Microsatellite characterization and marker development from public EST and WGS databases in the reef-building coral Acropora millepora (Cnidaria, Anthozoa, Scleractinia). J. Hered. 100: 329-337.
    • (2009) J. Hered , vol.100 , pp. 329-337
    • Wang, S.1    Zhang, L.2    Matz, M.3
  • 50
    • 33749653470 scopus 로고    scopus 로고
    • Analyses of the ribosomal internal transcribed spacers (ITS) and the 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (Scleractinia: Acroporidae)
    • Wei NWV, CC Wallace, CF Dai, KRM Pillay, CA Chen. 2006. Analyses of the ribosomal internal transcribed spacers (ITS) and the 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (Scleractinia: Acroporidae). Zool. Stud. 45: 404-418.
    • (2006) Zool. Stud , vol.45 , pp. 404-418
    • Wei, N.W.V.1    Wallace, C.C.2    Dai, C.F.3    Pillay, K.R.M.4    Chen, C.A.5
  • 51
    • 1842360244 scopus 로고    scopus 로고
    • Experimental hybridization and breeding incompatibilities within the mating systems of mass spawning reef corals
    • Willis BL, RC Babcock, PL Harrison, CC Wallace. 1997. Experimental hybridization and breeding incompatibilities within the mating systems of mass spawning reef corals. Coral Reefs 16: S53-S65.
    • (1997) Coral Reefs , vol.16
    • Willis, B.L.1    Babcock, R.C.2    Harrison, P.L.3    Wallace, C.C.4
  • 53
    • 84890417804 scopus 로고
    • The genetic structure of populations
    • Wright S. 1951. The genetic structure of populations. 0041nnu. Eugen. 15: 323-354.
    • (1951) 0041nnu. Eugen , vol.15 , pp. 323-354
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.