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Volumn 66, Issue 10, 2010, Pages 1053-1062

Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes

Author keywords

ABC transporters; Conyza canadensis; Glyphosate resistance; GS FLX 454 DNA sequencing; High Throughput transcriptome sequencing; Horseweed

Indexed keywords

HERBICIDE; VEGETABLE PROTEIN;

EID: 77957084941     PISSN: 1526498X     EISSN: 15264998     Source Type: Journal    
DOI: 10.1002/ps.2004     Document Type: Article
Times cited : (101)

References (44)
  • 1
    • 41349098162 scopus 로고    scopus 로고
    • Glyphosate-resistant crops: Adoption, use and future consideration
    • Dill GM, Cajacob CA and Padgette SR, Glyphosate-resistant crops: adoption, use and future consideration. Pest Manag Sci 64:326-331 (2008).
    • (2008) Pest Manag Sci , vol.64 , pp. 326-331
    • Dill, G.M.1    Cajacob, C.A.2    Padgette, S.R.3
  • 2
    • 41349085389 scopus 로고    scopus 로고
    • Glyphosate: A once-in-a-century herbicide
    • Duke SO and Powles SB, Glyphosate: a once-in-a-century herbicide. Pest Manag Sci 64:319-325 (2008).
    • (2008) Pest Manag Sci , vol.64 , pp. 319-325
    • Duke, S.O.1    Powles, S.B.2
  • 4
    • 0000858169 scopus 로고    scopus 로고
    • Glyphosate-resistant horseweed from Delaware
    • Van Gessel MJ, Glyphosate-resistant horseweed from Delaware. Weed Sci 49:703-705 (2001).
    • (2001) Weed Sci , vol.49 , pp. 703-705
    • Van Gessel, M.J.1
  • 5
    • 77951283500 scopus 로고    scopus 로고
    • Functional genomics analysis of glyphosate resistance in Conyza canadensis (horseweed)
    • Yuan JS, Abercrombie LG, Cao Y, Halfhill MD, Zhou X, Peng Y et al, Functional genomics analysis of glyphosate resistance in Conyza canadensis (horseweed). Weed Sci 58:109-117 (2010).
    • (2010) Weed Sci , vol.58 , pp. 109-117
    • Yuan, J.S.1    Abercrombie, L.G.2    Cao, Y.3    Halfhill, M.D.4    Zhou, X.5    Peng, Y.6
  • 6
    • 0035700821 scopus 로고    scopus 로고
    • The biology of Canadian weeds. 115. Conyza canadensis
    • Weaver SE, The biology of Canadian weeds. 115. Conyza canadensis. Can. J. Plant Sci 81:867-875 (2001).
    • (2001) Can. J. Plant Sci , vol.81 , pp. 867-875
    • Weaver, S.E.1
  • 9
    • 33847231923 scopus 로고    scopus 로고
    • Transformation and segregation of GFP fluorescence and glyphosate resistance in horseweed (Conyza canadensis) hybrids
    • Halfhill MD, Good LL, Basu C, Burris J, Main CL, Mueller TC et al, Transformation and segregation of GFP fluorescence and glyphosate resistance in horseweed (Conyza canadensis) hybrids. Plant Cell Rep 26:303-311 (2007).
    • (2007) Plant Cell Rep , vol.26 , pp. 303-311
    • Halfhill, M.D.1    Good, L.L.2    Basu, C.3    Burris, J.4    Main, C.L.5    Mueller, T.C.6
  • 10
    • 13844293277 scopus 로고    scopus 로고
    • Investigations into glyphosate resistant horseweed (Conyza canadensis): Retention, uptake, translocation,andmetabolism
    • Feng PCC, Tran M, Chiu T, Sammons RD, Heck GR and Cajacob CA, Investigations into glyphosate resistant horseweed (Conyza canadensis): retention, uptake, translocation,andmetabolism.Weed Sci 52:498-505 (2004).
    • (2004) Weed Sci , vol.52 , pp. 498-505
    • Feng, P.C.C.1    Tran, M.2    Chiu, T.3    Sammons, R.D.4    Heck, G.R.5    Cajacob, C.A.6
  • 11
    • 13844303737 scopus 로고    scopus 로고
    • Inheritance of evolved glyphosate resistance in Conyza canadensis (L.) Cronq
    • Zelaya IA, Owen MDK and Van Gessel MJ, Inheritance of evolved glyphosate resistance in Conyza canadensis (L.) Cronq. Theor Appl Genet 110:58-57 (2004).
    • (2004) Theor Appl Genet , vol.110 , pp. 58-57
    • Zelaya, I.A.1    Owen, M.D.K.2    Van Gessel, M.J.3
  • 13
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • Morozova O and Marra MA, Applications of next-generation sequencing technologies in functional genomics. Genomics 92:255-264 (2008).
    • (2008) Genomics , vol.92 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 14
    • 53649100100 scopus 로고    scopus 로고
    • The development and impact of 454 sequencing
    • Rothberg JM and Leamon JH, The development and impact of 454 sequencing. Nat Biotechnol 26:1117-1124 (2008).
    • (2008) Nat Biotechnol , vol.26 , pp. 1117-1124
    • Rothberg, J.M.1    Leamon, J.H.2
  • 15
    • 33845984917 scopus 로고    scopus 로고
    • Gene discovery and annotation using LCM-454 transcriptome sequencing
    • Emrich SJ, Barbazuk WB, Li L and Schnable PS, Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 17:69-73 (2007).
    • (2007) Genome Res , vol.17 , pp. 69-73
    • Emrich, S.J.1    Barbazuk, W.B.2    Li, L.3    Schnable, P.S.4
  • 17
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi
    • Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I et al, High-throughput sequencing provides insights into genome variation and evolution in Salmonella typhi. Nat Genet 40:987-993 (2008).
    • (2008) Nat Genet , vol.40 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5    Goodhead, I.6
  • 19
    • 44349088153 scopus 로고    scopus 로고
    • Identification of new genes in Sinorhizobiummeliloti using the Genome Sequencer FLX system
    • Mao C, Evans C, Jensen RV and Sobral BW, Identification of new genes in Sinorhizobiummeliloti using the Genome Sequencer FLX system. BMCMicrobiol 8:72 (2008).
    • (2008) BMCMicrobiol , vol.8 , pp. 72
    • Mao, C.1    Evans, C.2    Jensen, R.V.3    Sobral, B.W.4
  • 20
    • 77951121533 scopus 로고    scopus 로고
    • De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
    • Sun C, Li Y, Wu Q, Luo H, Sun Y, Song J et al, De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis. BMC Genomics 11:262 (2010).
    • (2010) BMC Genomics , vol.11 , pp. 262
    • Sun, C.1    Li, Y.2    Wu, Q.3    Luo, H.4    Sun, Y.5    Song, J.6
  • 21
    • 50149095793 scopus 로고    scopus 로고
    • The genome sequencer FLX22222system - longer reads, more applications, straight forward bioinformatics andmore complete datasets
    • Droege M and Hill B, The genome sequencer FLX22222system - longer reads, more applications, straight forward bioinformatics andmore complete datasets. J Biotech 136:3-10 (2008).
    • (2008) J Biotech , vol.136 , pp. 3-10
    • Droege, M.1    Hill, B.2
  • 22
    • 0027478270 scopus 로고
    • Solid phase DNA minisequencing by an enzymatic luminometric inorganic pyrophosphate detection assay
    • Nyren P, Pettersson B and Uhlen M, Solid phase DNA minisequencing by an enzymatic luminometric inorganic pyrophosphate detection assay. Anal Biochem 208:171-175 (1993).
    • (1993) Anal Biochem , vol.208 , pp. 171-175
    • Nyren, P.1    Pettersson, B.2    Uhlen, M.3
  • 23
    • 0030298490 scopus 로고    scopus 로고
    • Realtime DNA sequencing using detection of pyrophosphate release
    • Ronaghi M, Karamohamed S, Pettersson B, Uhlen Mand Nyren P, Realtime DNA sequencing using detection of pyrophosphate release. Anal Biochem 242:84-89 (1996).
    • (1996) Anal Biochem , vol.242 , pp. 84-89
    • Ronaghi, M.1    Karamohamed, S.2    Pettersson, B.3    Uhlen, M.N.P.4
  • 24
    • 0037471581 scopus 로고    scopus 로고
    • Shikimate accumulates in both glyphosate-sensitive and glyphosate-resistant horseweed (Conyza canadensis L. Cronq.)
    • Mueller TC, Massey JH, Hayes RM, Main CL and Stewart CN, Jr, Shikimate accumulates in both glyphosate-sensitive and glyphosate-resistant horseweed (Conyza canadensis L. Cronq.). J Agric Food Chem 51:680-684 (2003).
    • (2003) J Agric Food Chem , vol.51 , pp. 680-684
    • Mueller, T.C.1    Massey, J.H.2    Hayes, R.M.3    Main, C.L.4    Stewart Jr., C.N.5
  • 25
    • 67650915750 scopus 로고    scopus 로고
    • Shedding light on an extremophile lifestyle through transcriptomics
    • Dassanayake M, Haas JS, Bohnert HJ and Cheeseman JM, Shedding light on an extremophile lifestyle through transcriptomics. New Phytol 183:764-775 (2009).
    • (2009) New Phytol , vol.183 , pp. 764-775
    • Dassanayake, M.1    Haas, J.S.2    Bohnert, H.J.3    Cheeseman, J.M.4
  • 26
    • 77957094650 scopus 로고    scopus 로고
    • Characterization of waterhemp transcriptome using 454 pyrosequencing and its application for studies of herbicide target-site genes
    • (accepted)
    • Riggins CW, Peng Y, Stewart CN, Jr and Tranel PJ, Characterization of waterhemp transcriptome using 454 pyrosequencing and its application for studies of herbicide target-site genes. Pest Manag Sci (accepted).
    • Pest Manag Sci
    • Riggins, C.W.1    Peng, Y.2    Stewart Jr., C.N.3    Tranel, P.J.4
  • 27
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequencing quality trimming and vector removal
    • Chou HH and Holmes MH, DNA sequencing quality trimming and vector removal. Bioinformatics 17:1093-1104 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 1093-1104
    • Chou, H.H.1    Holmes, M.H.2
  • 28
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X and Madan A, CAP3: a DNA sequence assembly program. Genome Res 9:868-877 (1999).
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 29
    • 38849108075 scopus 로고    scopus 로고
    • Statistical methods for efficiency adjusted real-time PCR analysis
    • Yuan JS, Wang D and Stewart CN, Statistical methods for efficiency adjusted real-time PCR analysis. Biotechnol J 3:112-123 (2008).
    • (2008) Biotechnol J , vol.3 , pp. 112-123
    • Yuan, J.S.1    Wang, D.2    Stewart, C.N.3
  • 30
    • 70349662156 scopus 로고    scopus 로고
    • Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development
    • Alagna F, D'Agostino N, Torchia L, Servili M, Rao R, Pietrella M et al, Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development. BMC Genomics 10:399-xxx (2009).
    • (2009) BMC Genomics , vol.10
    • Alagna, F.1    D'Agostino, N.2    Torchia, L.3    Servili, M.4    Rao, R.5    Pietrella, M.6
  • 31
    • 70449516453 scopus 로고    scopus 로고
    • Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing
    • Wang W, Wang Y, Zhang Q, Qi Y and Guo D, Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing. BMC Genomics 10:465-xxx (2009).
    • (2009) BMC Genomics , vol.10
    • Wang, W.1    Wang, Y.2    Zhang, Q.3    Qi, Y.4    Guo, D.5
  • 32
    • 34250666153 scopus 로고    scopus 로고
    • Samplingthe Arabidopsis transcriptome with massively parallel pyrosequencing
    • Weber AP, Weber KL, Carr K, Wilkerson C and Ohlrogge JB, Samplingthe Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol 144:32-42 (2007).
    • (2007) Plant Physiol , vol.144 , pp. 32-42
    • Weber, A.P.1    Weber, K.L.2    Carr, K.3    Wilkerson, C.4    Ohlrogge, J.B.5
  • 33
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black DL, Mechanisms of alternative pre-messenger RNA splicing. Ann Rev Biochem 72:291-336 (2003).
    • (2003) Ann Rev Biochem , vol.72 , pp. 291-336
    • Black, D.L.1
  • 34
    • 75649098860 scopus 로고    scopus 로고
    • Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis
    • Yuan Y, Chung JD, Fu X, Johnson VE, Ranjan P, Booth SL et al, Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. Proc Natl Acad Sci USA 106:22020-22025 (2009).
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 22020-22025
    • Yuan, Y.1    Chung, J.D.2    Fu, X.3    Johnson, V.E.4    Ranjan, P.5    Booth, S.L.6
  • 35
    • 34248222428 scopus 로고    scopus 로고
    • Plant ATP-binding cassette transporters
    • Rea PA, Plant ATP-binding cassette transporters. Ann Rev Plant Biol 58:347-375 (2007).
    • (2007) Ann Rev Plant Biol , vol.58 , pp. 347-375
    • Rea, P.A.1
  • 37
    • 58449097846 scopus 로고    scopus 로고
    • The role of translocation as a mechanism of resistance to glyphosate
    • Shaner DL, The role of translocation as a mechanism of resistance to glyphosate. Weed Sci 57:118-123 (2009).
    • (2009) Weed Sci , vol.57 , pp. 118-123
    • Shaner, D.L.1
  • 38
    • 77949283600 scopus 로고    scopus 로고
    • Rapid vacuolar sequestration: The horseweed glyphosate resistance mechanism
    • Ge X, d'Avignon DA, Ackerman JJH and Sammons RD, Rapid vacuolar sequestration: the horseweed glyphosate resistance mechanism. Pest Manag Sci 66:345-348 (2010).
    • (2010) Pest Manag Sci , vol.66 , pp. 345-348
    • Ge, X.1    d'Avignon, D.A.2    Ackerman, J.J.H.3    Sammons, R.D.4
  • 39
    • 33846259786 scopus 로고    scopus 로고
    • Non-target site herbicide resistance: A family business
    • Yuan JS, Tranel PJ and Stewart CN, Jr, Non-target site herbicide resistance: a family business. Trends Plant Sci 12:6-13 (2007).
    • (2007) Trends Plant Sci , vol.12 , pp. 6-13
    • Yuan, J.S.1    Tranel, P.J.2    Stewart Jr., C.N.3
  • 41
    • 77957094254 scopus 로고    scopus 로고
    • Arabidopsis is not a weed, and mostly not a good model for weed genomics; there is no good model for weed genomics
    • ed. by Stewart CN, Jr. Wiley-Blackwell, Ames
    • Gressel J, Arabidopsis is not a weed, and mostly not a good model for weed genomics; there is no good model for weed genomics, in Weedy and Invasive Plant Genomics, ed. by Stewart CN, Jr. Wiley-Blackwell, Ames, IA, pp. 25-32 (2009).
    • (2009) Weedy and Invasive Plant Genomics , vol.IA , pp. 25-32
    • Gressel, J.1
  • 42
    • 77749268135 scopus 로고    scopus 로고
    • Sampling the waterhemp (Amaranthustuberculatus) genome using pyrosequencing technology
    • Lee RM, Thimmapuram J, Thinglum KA, Gong G, Hernandez AG, Wright CL et al, Sampling the waterhemp (Amaranthustuberculatus) genome using pyrosequencing technology. Weed Sci 57:463-469 (2009).
    • (2009) Weed Sci , vol.57 , pp. 463-469
    • Lee, R.M.1    Thimmapuram, J.2    Thinglum, K.A.3    Gong, G.4    Hernandez, A.G.5    Wright, C.L.6
  • 43
    • 34249897232 scopus 로고    scopus 로고
    • Characterization of an EST database for the perennial weed leafy spurge: An important resource for weed biology research
    • Anderson JV, Horvath DP, Chao WS, Foley ME, Hernandez AG, Thimmapuram J et al, Characterization of an EST database for the perennial weed leafy spurge: an important resource for weed biology research. Weed Sci 55:193-203 (2007).
    • (2007) Weed Sci , vol.55 , pp. 193-203
    • Anderson, J.V.1    Horvath, D.P.2    Chao, W.S.3    Foley, M.E.4    Hernandez, A.G.5    Thimmapuram, J.6
  • 44
    • 34548025846 scopus 로고    scopus 로고
    • Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes
    • Lokko Y, Anderson JV, Rudd S, Raji AAJ, Horvath D, Mikel MA et al, Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes. Plant Cell Rep 26:1605-1618 (2007).
    • (2007) Plant Cell Rep , vol.26 , pp. 1605-1618
    • Lokko, Y.1    Anderson, J.V.2    Rudd, S.3    Raji, A.A.J.4    Horvath, D.5    Mikel, M.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.