Over-represented promoter motifs in abiotic stress-induced DREB genes of rice and sorghum and their probable role in regulation of gene expression

Plant Signaling and Behavior

Volumn 5, Issue 7, 2010, Pages 775-784

  Srivastav, Amrita ^a   Mehta, Sameet ^a   Lindlof, Angelica ^b   Bhargava, Sujata ^a  

^a UNIVERSITY OF PUNE   (India)

^b UNIVERSITY OF SKÖVDE   (Sweden)

Author keywords

DREB genes; DREB promoters; In silico analysis; Motifs

Indexed keywords

EID: 77956966539     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.4161/psb.5.7.11769     Document Type: Article

References (22)

1. Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K. DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem Biophys Res Commun 2002; 290:998-1009.
2. Nakano T, Suzuki K, Fujimura T, Shinshi H. Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol 2006; 140:411-432.
3. Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, et al. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two micro array systems. Plant J 2004; 38:982-993.
4. Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K, et al. Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 2006; 18:1292-1309.
5. Maruyama K, Takeda M, Kidokoro S, Yamada K, Sakuma Y, Urano K, et al. Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol 2009; 150:1972-1980.
6. Nakashima K, Yamaguchi-Shinozaki K. Regulons involved in osmotic stress-responsive and cold stress-responsive gene expression in plants. Physiol Plant 2006; 126:62-71.
7. Chinnusamy V, Ohta M, Kanrar S, Lee BH, Hong X, Agarwal M, et al. ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev 2003; 17:1043-1054.
8. Haake V, Cook D, Riechmann JL, Pineda O, Thomashow MF, Zhang JZ. Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. Plant Physiol 2002; 130:639-648.
9. Paterson AH, Bowers JE, Bruggmann R, Dubchak I, et al. The Sorghum bicolor genome and the diversification of grasses. Nature 2009; 457:551-556.
10. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 2007; 24:1596-1599.
11. Lindlof A, Brautigam M, Chawade A, Olsson O. In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control. Bioinformatics 2009; 25:1345-1348.
12. th Edition. Affiliated East West Press, New Delhi 1994; 117-120.
13. Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell 2009; l21:972-984.
14. Xiong L, Zhu J-K. Regulation of abscisic acid biosynthesis. Plant Physiol 2003; 133:29-36.
15. Buchanan CD, Lim S, Salzman RA, Kagiampakis I, Morishige DT, Weers BD, et al. Sorghum bicolor's tran scriptome response to dehydration, high salinity and ABA. Plant Molec Biol 2005; 58:699-720.
16. Creelman RA, Mullet JE. Jasmonic acid distribution and action in plants: regulation during development and response to biotic and abiotic stress. Proc Natl Acad Sci USA 1995; 92:4114-4119.
17. Turner JG, Ellis C, Devoto A. The jasmonate signal pathway. Plant Cell 2002; 14:153-164.
18. Sobajima H, Tani T, Chujo T, Okada K, Suzuki K, Mori S, et al. Identification of a jasmonic acid -responsive region in the promoter of the rice 12-oxo-phytodienoic acid reductase 1 gene OsOPR1. Biosci Biotechnol Biochem 2007; 71:3110-3115.
19. Nag R, Maity MK, DasGupta M. Dual DNA Binding property of ABA insensitive 3 like factors targeted to promoters responsive to ABA and auxin. Plant Mol Biol 2005; 59.
20. Nakashima K, Yusuke I, Yamaguchi-Shinozaki K. Transcriptional regulatory networks in response to abiotic stresses in Arabidopsis and grasses. Plant Physiol 2009; 149:88-95.
21. Bartels D, Sunkar R. Drought and salt tolerance in plants. Crit Rev Plant Sci 2005; 24:23-58.
22. Zarka DG, Vogel JV, Cook D, Thomashow MF. Cold induction of arabidopsis CBF genes involves multiple ICE promoter elements and a cold regulatory circuit that is desensitized by low temperature. Plant Physiol 2003; 133:910-918.