Polygalacturonase inhibiting protein: Isolation, developmental regulation and pathogen related expression in Panax ginseng C.A. Meyer

Molecular Biology Reports

Volumn 37, Issue 7, 2010, Pages 3445-3454

  Sathiyaraj, Gayathri ^a   Srinivasan, Sathiyaraj ^a   Subramanium, Sathiyamoorty ^a   Kim, Yu Jin ^a   Kim, Yeon Ju ^a   Kwon, Woo Saeng ^a   Yang, Deok Chun ^a  

^a Kyung Hee University   (South Korea)

Author keywords

Abiotic stress; Biotic stress; Polygalacturonase; Polygalacturonase inhibiting protein; Relative expression

Indexed keywords

COMPLEMENTARY DNA; POLYGALACTURONASE; POLYGALACTURONASE INHIBITING PROTEIN; UNCLASSIFIED DRUG;

ALPHA HELIX; AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; BOTRYTIS CINEREA; BUD; CELL WALL; COLLETOTRICHUM GLOEOSPORIOIDES; CONTROLLED STUDY; CYLINDROCARPON DESTRUCTAN; FUNGAL PLANT DISEASE; FUNGUS; FUSARIUM OXYSPORUM; GINSENG; NONHUMAN; PHYTHIUM ULTIMUM; PLANT ROOT; PLANT STEM; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN ISOLATION; PROTEIN STRUCTURE; REGULATORY MECHANISM; RHIZOCTONIA SOLANI; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SOUTHERN BLOTTING; STRUCTURE ANALYSIS; UPREGULATION;

BLOTTING, SOUTHERN; DISK DIFFUSION ANTIMICROBIAL TESTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; PANAX; PLANT PROTEINS; POLYGALACTURONASE; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; STRESS, PHYSIOLOGICAL; TIME FACTORS;

ARABIDOPSIS; BOTRYOTINIA FUCKELIANA; CICER ARIETINUM; FUNGI; FUSARIUM OXYSPORUM; GLOMERELLA CINGULATA; NEONECTRIA RADICICOLA; PANAX GINSENG; THANATEPHORUS CUCUMERIS;

EID: 77956950172     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-009-9936-1     Document Type: Article

References (35)

1. Y Elad K Evensen 1995 Physiological aspects of resistance to Botrytis cinerea Phytopathology 85 637 643
2. Cooper RM (1984) The role of cell wall-degrading enzymes in infection and damage. In: Wood RKS, Jellis GJ (eds) Plant disease: infection, damage and loss. Blackwell Scientific, Oxford, pp 13-27
3. Hahn MG, Bucheli P, Cervone F, Doares SH, O'Neill RA, Darvill A, Albersheim P (1989) Roles of cell wall constituents in plant-pathogen interaction. In: Kosuge T, Nester EW (eds) Plant-microbe interact. Molecular and genetics perspectives. McGraw Hill, New York, pp 131-181
4. C Weurman 1953 Pectinase inhibitors in pears Acta Bot Neerl 2 107 121 1:CAS:528:DyaG2cXks1yjsw%3D%3D
5. F Favaron C Castiglioni R D'Ovidio P Alghisi 1997 Polygalacturonase- inhibiting proteins from Allium porrum L. and their role in plant tissue against fungal endopolygalacturonase Mol Plant Microb Interact 50 403 414 1:CAS:528:DyaK2sXntFSjtbc%3D
6. F Cervone MG Hahn G De Lorenzo A Darvill P Albersheim 1989 Host-pathogen interactions. XXXIII. A plant protein converts a fungal pathogenesis factor into an elicitor of plant defense responses Plant Physiol 90 542 548 1:CAS:528:DyaL1MXlvFWlt7c%3D 10.1104/pp.90.2.542 16666805
7. Powell ALT, Stotz HU, Labavitch JM, Bennette AB (1994) Glycoprotein inhibitors of fungal polygalacturonases. In: Daniels MJ et al (eds) Advances in molecular genetics of plant-microbe interactions, vol 3. Kluwer Academic, Boston, pp 399-402
8. DA Jones JDG Jones 1997 The role of leucine-rich repeat protein in plant defenses Adv Bot Res 24 89 167 10.1016/S0065-2296(08)60072-5
9. PC Morris A Kumar DJ Bowles AC Cuming 1990 Osmotic stress and abscisic acid regulate the expression of the Em gene of wheat Eur J Biochem 190 625 630 1:CAS:528:DyaK3cXktVegsLw%3D 10.1111/j.1432-1033.1990.tb15618.x 2142646
10. LJ McGuffin K Bryson DT Jones 2000 The PSIPRED protein structure prediction server Bioinformatics 16 404 405 1:CAS:528:DC%2BD3cXltFOksrw%3D 10.1093/bioinformatics/16.4.404 10869041
11. V Lombard EB Camon HE Parkinson P Hingamp G Stoesser N Redaschi 2002 EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database Bioinformatics 18 763 764 1:CAS:528:DC%2BD38XkvV2htrY%3D 10.1093/bioinformatics/18.5.763 12050074
12. A Sali TL Blundell 1993 Comparative protein modelling by satisfaction of spatial restraints J Mol Biol 234 779 815 1:CAS:528:DyaK2cXnt1ylug%3D%3D 10.1006/jmbi.1993.1626 8254673 (Pubitemid 24007801)
13. L Holm J Park 2000 DaliLite workbench for protein structure comparison Bioinformatics 16 566 567 1:CAS:528:DC%2BD3cXnsVeltr8%3D 10.1093/bioinformatics/ 16.6.566 10980157
14. RA Laskowski MW Macarthur DS Moss JM Thornton 1993 PROCHECK: a program to check the stereochemical quality of protein structures J Appl Crystallogr 26 2 283 291 1:CAS:528:DyaK3sXit12lurY%3D 10.1107/S0021889892009944
15. DeLano WL (2002) The PyMOL molecular graphics system. DeLano Scientific, San Carlos
16. MW Sweetingham RH Cruickshank DH Wong 1986 Pectic zymograms and taxonomy and pathogenicity of the Ceratobasidiaceae Trans Br Mycol Sci 86 305 311 1:CAS:528:DyaL28XktVeisbk%3D 10.1016/S0007-1536(86)80161-9
17. ALT Powell J van Kan A ten Have J Visser LC Greve AB Bennett JM Labavitch 2000 Transgenic expression of pear PGIP in tomato limits fungal colonization Mol Plant Microb Interact 13 942 950 1:CAS:528:DC%2BD3cXmtVWgurc%3D 10.1094/MPMI.2000.13.9.942
18. M Faize T Sugiyama L Faize H Ishii 2003 Polygalacturonase-inhibiting protein (PGIP) from Japanese pear: possible involvement in resistance against scab Mol Plant Microb Interact 63 319 327 1:CAS:528:DC%2BD2cXlsFynu70%3D
19. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 1:CAS:528:DyaE28XksVehtrY%3D 10.1016/0003-2697(76)90527- 3 942051
20. G Wang TJ Michailides RM Bostock 1997 Improved detection of polygalacturonase activity due to Mucor piriformis with a modified dinitrosalicylic acid reagent Phytopathology 87 161 163 1:CAS:528: DyaK2sXktV2lurg%3D 10.1094/PHYTO.1997.87.2.161 18945136
21. RJ Taylor GA Secor 1988 An improved diffusion assay for quantifying the polygalacturonase content of Erwinia culture filtrates Phytopathology 78 1101 1103 1:CAS:528:DyaL1MXjtler 10.1094/Phyto-78-1101
22. MK Kim BS Lee JG In H Sun JH Yoon DC Yang 2006 Comparative analysis of expressed sequence tags (ESTs) of ginseng leaf Plant Cell Rep 25 599 606 1:CAS:528:DC%2BD28Xksl2iu7w%3D 10.1007/s00299-005-0095-0 16397780 (Pubitemid 43787389)
23. Y Wang KJ Addess J Chen LY Geer J He S He S Lu T Madej A Marchler-Bauer PA Thiessen N Zhang SH Bryant 2007 MMDB: annotating protein sequences with Entrez's 3D-structure database Nucleic Acids Res 35 298 300 10.1093/nar/gkl952 (Pubitemid 46056218)
24. F Cervone G De Lorenzo L Degra G Salvi 1987 Elicitation of necrosis in Vigna unguiculata Walps Aspergillus niger endopolygalacturonase and a-D-galacturonate oligomers Plant Physiol 85 626 630 1:CAS:528: DyaL1cXnt1ehsw%3D%3D 10.1104/pp.85.3.626 16665750
25. HU Stotz ALT Powell SE Damon LC Greve AB Bennett JM Labavitch 1993 Molecular characterisation of a polygalacturonase inhibitor from Pyrus communis L. cv Bartlett Plant Physiol 102 133 138 1:CAS:528:DyaK3sXltlCisL8%3D 10.1104/pp.102.1.133 8108494
26. C Yao WS Conway CE Sams 1995 Purification and characterization of a polygalacturonase-inhibiting protein from apple fruit Phytopathology 85 1373 1377 1:CAS:528:DyaK28Xkslajtg%3D%3D 10.1094/Phyto-85-1373
27. M Fredini R Cremonini G Salvi C Caparai A Desiderio 1993 Cytological localization of the pgip genes in the embryo suspensor cells of Phaseolus vulgaris L Theor Appl Genet 87 369 373 10.1007/BF01184925
28. F Favaron R D'Ovidio E Porceddu P Alghisi 1994 Purification and characterization of a soybean polygalacturonase-inhibiting protein Planta 195 80 87 1:CAS:528:DyaK2MXit1yjt7s%3D 10.1007/BF00206295 7765794
29. Gomathi V, Gayathri S, Anupama B, Silva JAT, Gnanamanickam SS (2006) Molecular aspects of polygalacturonase-inhibiting proteins (PGIPs) in plant defense. In: Silva JAT (ed) Floriculture, ornamental and plant biotechnology, vol 3. Global Science Books, London, pp 373-379
30. G De Lorenzo R D'Ovidio F Cervone 2001 The role of polygalacturonase- inhibiting proteins (PGIPs) in defense against pathogenic fungi Annu Rev Phytopathol 39 313 335 10.1146/annurev.phyto.39.1.313 11701868 (Pubitemid 32965188)
31. R D'Ovidio S Roberti M Di Giovanni C Capodicasa M Melaragni L Sella P Tosi F Favaron 2006 The characterization of the soybean Pgip family reveals that a single member is responsible for the activity detected in soybean tissues Planta 224 633 645 10.1007/s00425-006-0235-y 16501991 (Pubitemid 44188106)
32. C Yao S William RR Conway S David SR Gavin ES Carl 1999 Gene encoding polygalacturonase inhibiting in apple fruit is developmentally regulated and activated by wounding and fungal infection Plant Mol Biol 39 1231 1241 1:CAS:528:DyaK1MXktFCnsrg%3D 10.1023/A:1006155723059 10380809 (Pubitemid 29266871)
33. S Ferrari D Vairo FM Ausubel F Cervone G De Lorenzo 2003 Tandemly duplicated Arabidopsis genes that encode polygalacturonase-inhibiting proteins are regulated coordinately by different signal transduction pathways in response to fungal infection Plant Cell 15 93 106 1:CAS:528:DC%2BD3sXmtFentA%3D%3D 10.1105/tpc.005165 12509524 (Pubitemid 36137664)
34. MF Mahinandiarena PP Olivieri GR Dalio CR Oliva 2001 Isolation and characterization of polygalacturonase inhibitory proteins from potato leaves. Accumulation in response to salicylic acid, wound and infection Plant Physiol Biochem 39 129 136 10.1016/S0981-9428(00)01228-6 (Pubitemid 32200641)
35. BJ Cook RP Clay CW Bergmann P Albersheim AG Darvil 1999 Fungal polygalacturonase exhibit different substrate degradation patterns and differ in their susceptibilities to polygalacturonase-inhibiting proteins Mol Plant Microb Interact 12 703 711 1:CAS:528:DyaK1MXkslKhtLg%3D 10.1094/MPMI.1999.12.8. 703