-
2
-
-
9744227183
-
Ubiquitin: structures, functions, mechanisms
-
Pickart C.M., Eddins M.J. Ubiquitin: structures, functions, mechanisms. Biochim. Biophys. Acta 2004, 1695:55-72.
-
(2004)
Biochim. Biophys. Acta
, vol.1695
, pp. 55-72
-
-
Pickart, C.M.1
Eddins, M.J.2
-
3
-
-
34547130325
-
Certain pairs of ubiquitin-conjugating enzymes (E2s) and ubiquitin-protein ligases (E3s) synthesize nondegradable forked ubiquitin chains containing all possible isopeptide linkages
-
Kim H.T., Kim K.P., Lledias F., Kisselev A.F., Scaglione K.M., Skowyra D., Gygi S.P., Goldberg A.L. Certain pairs of ubiquitin-conjugating enzymes (E2s) and ubiquitin-protein ligases (E3s) synthesize nondegradable forked ubiquitin chains containing all possible isopeptide linkages. J. Biol. Chem. 2007, 282:17375-17386.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 17375-17386
-
-
Kim, H.T.1
Kim, K.P.2
Lledias, F.3
Kisselev, A.F.4
Scaglione, K.M.5
Skowyra, D.6
Gygi, S.P.7
Goldberg, A.L.8
-
4
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
Peng J., Schwartz D., Elias J.E., Thoreen C.C., Cheng D., Marsischky G., Roelofs J., Finley D., Gygi S.P. A proteomics approach to understanding protein ubiquitination. Nat. Biotechnol. 2003, 21:921-926.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 921-926
-
-
Peng, J.1
Schwartz, D.2
Elias, J.E.3
Thoreen, C.C.4
Cheng, D.5
Marsischky, G.6
Roelofs, J.7
Finley, D.8
Gygi, S.P.9
-
5
-
-
44649101850
-
Atypical ubiquitin chains: new molecular signals. Protein modifications: beyond the usual suspects review series
-
Ikeda F., Dikic I. Atypical ubiquitin chains: new molecular signals. Protein modifications: beyond the usual suspects review series. EMBO Rep. 2008, 9:536-542.
-
(2008)
EMBO Rep.
, vol.9
, pp. 536-542
-
-
Ikeda, F.1
Dikic, I.2
-
6
-
-
0030028574
-
Novel multiubiquitin chain linkages catalyzed by the conjugating enzymes E2EPF and RAD6 are recognized by 26 S proteasome subunit 5
-
Baboshina O.V., Haas A.L. Novel multiubiquitin chain linkages catalyzed by the conjugating enzymes E2EPF and RAD6 are recognized by 26 S proteasome subunit 5. J. Biol. Chem. 1996, 271:2823-2831.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 2823-2831
-
-
Baboshina, O.V.1
Haas, A.L.2
-
7
-
-
33750219981
-
A ubiquitin ligase complex assembles linear polyubiquitin chains
-
Kirisako T., Kamei K., Murata S., Kato M., Fukumoto H., Kanie M., Sano S., Tokunaga F., Tanaka K., Iwai K. A ubiquitin ligase complex assembles linear polyubiquitin chains. EMBO J. 2006, 25:4877-4887.
-
(2006)
EMBO J.
, vol.25
, pp. 4877-4887
-
-
Kirisako, T.1
Kamei, K.2
Murata, S.3
Kato, M.4
Fukumoto, H.5
Kanie, M.6
Sano, S.7
Tokunaga, F.8
Tanaka, K.9
Iwai, K.10
-
8
-
-
1342304089
-
Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling
-
Varadan R., Assfalg M., Haririnia A., Raasi S., Pickart C., Fushman D. Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling. J. Biol. Chem. 2004, 279:7055-7063.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 7055-7063
-
-
Varadan, R.1
Assfalg, M.2
Haririnia, A.3
Raasi, S.4
Pickart, C.5
Fushman, D.6
-
9
-
-
67349231313
-
Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains
-
Komander D., Reyes-Turcu F., Licchesi J.D., Odenwaelder P., Wilkinson K.D., Barford D. Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains. EMBO Rep. 2009, 10:466-473.
-
(2009)
EMBO Rep.
, vol.10
, pp. 466-473
-
-
Komander, D.1
Reyes-Turcu, F.2
Licchesi, J.D.3
Odenwaelder, P.4
Wilkinson, K.D.5
Barford, D.6
-
10
-
-
70149104456
-
The structure and conformation of Lys 63-linked tetraubiquitin
-
Datta A.B., Hura G.L., Wolberger C. The structure and conformation of Lys 63-linked tetraubiquitin. J. Mol. Biol. 2009, 392:1117-1124.
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 1117-1124
-
-
Datta, A.B.1
Hura, G.L.2
Wolberger, C.3
-
11
-
-
62549155321
-
Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
-
Rahighi S., Ikeda F., Kawasaki M., Akutsu M., Suzuki N., Kato R., Kensche T., Uejima T., Bloor S., Komander D., Randow F., Wakatsuki S., Dikic I. Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation. Cell 2009, 136:1098-1109.
-
(2009)
Cell
, vol.136
, pp. 1098-1109
-
-
Rahighi, S.1
Ikeda, F.2
Kawasaki, M.3
Akutsu, M.4
Suzuki, N.5
Kato, R.6
Kensche, T.7
Uejima, T.8
Bloor, S.9
Komander, D.10
Randow, F.11
Wakatsuki, S.12
Dikic, I.13
-
12
-
-
77955417276
-
Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne
-
Bremm A., Freund S.M., Komander D. Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne. Nat. Struct. Mol. Biol. 2010, 17:939-947.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 939-947
-
-
Bremm, A.1
Freund, S.M.2
Komander, D.3
-
13
-
-
0026746290
-
Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2)
-
Cook W.J., Jeffrey L.C., Carson M., Chen Z., Pickart C.M. Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2). J. Biol. Chem. 1992, 267:16467-16471.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 16467-16471
-
-
Cook, W.J.1
Jeffrey, L.C.2
Carson, M.3
Chen, Z.4
Pickart, C.M.5
-
14
-
-
0028316184
-
Structure of tetraubiquitin shows how multiubiquitin chains can be formed
-
Cook W.J., Jeffrey L.C., Kasperek E., Pickart C.M. Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J. Mol. Biol. 1994, 236:601-609.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 601-609
-
-
Cook, W.J.1
Jeffrey, L.C.2
Kasperek, E.3
Pickart, C.M.4
-
15
-
-
0036922992
-
Structural properties of polyubiquitin chains in solution
-
Varadan R., Walker O., Pickart C., Fushman D. Structural properties of polyubiquitin chains in solution. J. Mol. Biol. 2002, 324:637-647.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 637-647
-
-
Varadan, R.1
Walker, O.2
Pickart, C.3
Fushman, D.4
-
16
-
-
20444391345
-
Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain
-
Varadan R., Assfalg M., Raasi S., Pickart C., Fushman D. Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain. Mol. Cell 2005, 18:687-698.
-
(2005)
Mol. Cell
, vol.18
, pp. 687-698
-
-
Varadan, R.1
Assfalg, M.2
Raasi, S.3
Pickart, C.4
Fushman, D.5
-
17
-
-
68349135106
-
Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13
-
Zhang N., Wang Q., Ehlinger A., Randles L., Lary J.W., Kang Y., Haririnia A., Storaska A.J., Cole J.L., Fushman D., Walters K.J. Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13. Mol. Cell 2009, 35:280-290.
-
(2009)
Mol. Cell
, vol.35
, pp. 280-290
-
-
Zhang, N.1
Wang, Q.2
Ehlinger, A.3
Randles, L.4
Lary, J.W.5
Kang, Y.6
Haririnia, A.7
Storaska, A.J.8
Cole, J.L.9
Fushman, D.10
Walters, K.J.11
-
18
-
-
0038820381
-
Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding
-
Kang R.S., Daniels C.M., Francis S.A., Shih S.C., Salerno W.J., Hicke L., Radhakrishnan I. Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding. Cell 2003, 113:621-630.
-
(2003)
Cell
, vol.113
, pp. 621-630
-
-
Kang, R.S.1
Daniels, C.M.2
Francis, S.A.3
Shih, S.C.4
Salerno, W.J.5
Hicke, L.6
Radhakrishnan, I.7
-
19
-
-
26944465404
-
Diverse polyubiquitin interaction properties of ubiquitin-associated domains
-
Raasi S., Varadan R., Fushman D., Pickart C.M. Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat. Struct. Mol. Biol. 2005, 12:708-714.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 708-714
-
-
Raasi, S.1
Varadan, R.2
Fushman, D.3
Pickart, C.M.4
-
20
-
-
33847056330
-
Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH
-
Eddins M.J., Varadan R., Fushman D., Pickart C.M., Wolberger C. Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH. J. Mol. Biol. 2007, 367:204-211.
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 204-211
-
-
Eddins, M.J.1
Varadan, R.2
Fushman, D.3
Pickart, C.M.4
Wolberger, C.5
-
21
-
-
0035128227
-
Structure of a new crystal form of tetraubiquitin
-
Phillips C.L., Thrower J., Pickart C.M., Hill C.P. Structure of a new crystal form of tetraubiquitin. Acta Crystallogr. D Biol. Crystallogr. 2001, 57:341-344.
-
(2001)
Acta Crystallogr. D Biol. Crystallogr.
, vol.57
, pp. 341-344
-
-
Phillips, C.L.1
Thrower, J.2
Pickart, C.M.3
Hill, C.P.4
-
22
-
-
73449088337
-
Crystal structure of UbcH5b-ubiquitin intermediate: insight into the formation of the self-assembled E2-Ub conjugates
-
Sakata E., Satoh T., Yamamoto S., Yamaguchi Y., Yagi-Utsumi M., Kurimoto E., Tanaka K., Wakatsuki S., Kato K. Crystal structure of UbcH5b-ubiquitin intermediate: insight into the formation of the self-assembled E2-Ub conjugates. Structure 2010, 18:138-147.
-
(2010)
Structure
, vol.18
, pp. 138-147
-
-
Sakata, E.1
Satoh, T.2
Yamamoto, S.3
Yamaguchi, Y.4
Yagi-Utsumi, M.5
Kurimoto, E.6
Tanaka, K.7
Wakatsuki, S.8
Kato, K.9
-
23
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 1997, 276:307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
24
-
-
0000560808
-
MOLREP: an automated program for molecular replacement
-
Vagin A., Teplyakov A. MOLREP: an automated program for molecular replacement. J. Appl. Crystallogr. 1997, 30:1022-1025.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
27
-
-
0037441653
-
Structure validation by Calpha geometry: φ, ψ and Cβ deviation
-
Lovell S.C., Davis I.W., Arendall W.B., de Bakker P.I., Word J.M., Prisant M.G., Richardson J.S., Richardson D.C. Structure validation by Calpha geometry: φ, ψ and Cβ deviation. Proteins 2003, 50:437-450.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall, W.B.3
de Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
29
-
-
0025644201
-
A 25-kilodalton ubiquitin carrier protein (E2) catalyzes multi-ubiquitin chain synthesis via lysine 48 of ubiquitin
-
Chen Z., Pickart C.M. A 25-kilodalton ubiquitin carrier protein (E2) catalyzes multi-ubiquitin chain synthesis via lysine 48 of ubiquitin. J. Biol. Chem. 1990, 265:21835-21842.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 21835-21842
-
-
Chen, Z.1
Pickart, C.M.2
-
30
-
-
0034711246
-
Cyclization of polyubiquitin by the E2-25K ubiquitin conjugating enzyme
-
Yao T., Cohen R.E. Cyclization of polyubiquitin by the E2-25K ubiquitin conjugating enzyme. J. Biol. Chem. 2000, 275:36862-36868.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 36862-36868
-
-
Yao, T.1
Cohen, R.E.2
-
31
-
-
33646773525
-
Interdomain mobility in di-ubiquitin revealed by NMR
-
Ryabov Y., Fushman D. Interdomain mobility in di-ubiquitin revealed by NMR. Proteins 2006, 63:787-796.
-
(2006)
Proteins
, vol.63
, pp. 787-796
-
-
Ryabov, Y.1
Fushman, D.2
-
33
-
-
50349102579
-
Recognition of polyubiquitin isoforms by the multiple ubiquitin binding modules of isopeptidase T
-
Reyes-Turcu F.E., Shanks J.R., Komander D., Wilkinson K.D. Recognition of polyubiquitin isoforms by the multiple ubiquitin binding modules of isopeptidase T. J. Biol. Chem. 2008, 283:19581-19592.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 19581-19592
-
-
Reyes-Turcu, F.E.1
Shanks, J.R.2
Komander, D.3
Wilkinson, K.D.4
-
34
-
-
17844401751
-
SUMO modification of the ubiquitin-conjugating enzyme E2-25K
-
Pichler A., Knipscheer P., Oberhofer E., van Dijk W.J., Korner R., Olsen J.V., Jentsch S., Melchior F., Sixma T.K. SUMO modification of the ubiquitin-conjugating enzyme E2-25K. Nat. Struct. Mol. Biol. 2005, 12:264-269.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 264-269
-
-
Pichler, A.1
Knipscheer, P.2
Oberhofer, E.3
van Dijk, W.J.4
Korner, R.5
Olsen, J.V.6
Jentsch, S.7
Melchior, F.8
Sixma, T.K.9
-
35
-
-
0030772445
-
Structure and function of ubiquitin conjugating enzyme E2-25K: the tail is a core-dependent activity element
-
Haldeman M.T., Xia G., Kasperek E.M., Pickart C.M. Structure and function of ubiquitin conjugating enzyme E2-25K: the tail is a core-dependent activity element. Biochemistry 1997, 36:10526-10537.
-
(1997)
Biochemistry
, vol.36
, pp. 10526-10537
-
-
Haldeman, M.T.1
Xia, G.2
Kasperek, E.M.3
Pickart, C.M.4
|