Fine decomposition of the inbreeding and the coancestry coefficients by using the tabular method

Conservation Genetics

Volumn 11, Issue 5, 2010, Pages 1945-1952

  Garcia Cortes L A ^a,b   Martinez Avila J C ^a   Toro, M A ^b  

^a INIA   (Spain)

^b UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

Bull Comet; Coancestry; Inbreeding; Przewalski horse; Tabular method

Indexed keywords

ALGORITHM; ANCESTRY; COHORT ANALYSIS; DECOMPOSITION; HORSE; INBREEDING DEPRESSION; REINTRODUCTION; SAMPLING; WAR;

UKRAINE;

EQUIDAE; EQUUS PRZEWALSKII;

EID: 77956871164     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-010-0084-x     Document Type: Article

References (26)

1. Ballou JD (1994) Population biology. In: Boyd L, Houpt DA (eds) Przewalski's horse: the history and biology of an endangered species. State University of New York press, New York, pp 93-114.
2. Boichard D, Maignel L, Verrier E (1997) The value of using probabilities of gene origin to measure genetic variability in a population. Genet Sel Evol 29: 5-23.
3. Bouman I, Bouman J (1994) The history of the Przewalski's horse. In: Boyd L, Houpt DA (eds) Przewalski's horse: the history and biology of an endangered species. State University of New York press, New York, pp 5-38.
4. Caballero A, Toro M (2000) Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genet Res 75: 331-343.
5. Caballero A, Toro M (2002) Analysis of genetic diversity for the management of conserved subdivided populations. Conserv Genet 3: 289-299.
6. Chang L, Fernando RL, Grossman M (1991) On the principle underlying the tabular method to compute coancestry. Theor Appl Genet 81: 233-238.
7. Colleau JJ, Sargolzaei M (2008) A proximal decomposition of inbreeding, coancestry and contributions. Genet Res Camb 90: 191-198.
8. Cruden D (1949) The computation of inbreeding coefficients for closed populations. J Hered 40: 248-251.
9. Emik LO, Terrill CE (1949) Systematic procedures for calculating inbreeding coefficients. J Hered 40: 51-55.
10. García-Cortés LA, Martínez-Ávila JC, Toro MA (2008) Partition of the genetic trend to validate multiple selection decisions. Animal 2: 821-824.
11. Geyer CJ, Thompson EA (1988) Gene survival in the Asian wild horse (Equus przewalskii): I. Dependence of gene survival in the Calgary breeding group pedigree. Zoo biol 7: 313-327.
12. Geyer CJ, Thompson EA, Ryder OA (1989) Gene survival in the Asian wild horse (Equus przewalskii): II. Gene survival in the whole population, in subgroups, and through history. Zoo biol 8: 313-329.
13. Gulisija D, Gianola D, Weigel KA, Toro MA (2006) Between-founder heterogeneity in inbreeding depression for production in Jersey cows. Livest Sci 104: 244-253.
14. James JW, McBride G (1958) The spread of genes by natural and artificial selection in a closed poultry flock. J Genet 56: 55-62.
15. Lacy RC (1989) Analysis of founder representation in pedigrees-founder equivalents and founder genome equivalents. Zoo Biol 8: 111-123.
16. Lacy RC (1997) Errata. Evolution 51: 1025.
17. Lacy RC, Alaks G, Walsh A (1996) Hierarchical analysis of inbreeding depression in Peromyscus polionotus. Evolution 50: 2187-2200.
18. Li FHF, Roderick TH (1970) Computer calculation of Wright's inbreeding coefficient by Cruden's method. J Hered 61: 37-38.
19. MacCluer JW, VandeBerg JL, Read B, Ryder OA (1986) Pedigree analysis by computer simulation. Zoo Biol 5: 147-160.
20. Malécot G (1948) Les mathematiques de l'heredité. Masson, Paris.
21. Rodrigañez J, Toro MA, Rodriguez MC, Silió L (1998) Effect of founder allele survival and inbreeding depression on litter size in a closed line of large white pigs. Anim Sci 67: 573-582.
22. Rostron J (1978) On the computation of inbreeding coefficients. Ann Human Genet 41: 469-475.
23. Volf J (1994) The studbook. In: Boyd L, Houpt DA (eds) Przewalski's horse: the history and biology of an endangered species. State University of New York press, New York, pp 61-73.
24. Wright S (1922) Coefficients of inbreeding and relationship. Am Nat 56: 330-338.
25. Wright S (1934) The methods of path coefficients. Ann Math Stat 5: 161-215.
26. Wright S (1938) Size of population and breeding structure in relation to evolution. Science 87: 430-431.