-
1
-
-
0030930294
-
The type III (Hrp) secretion pathway of plant pathogenic bacteria: Trafficking harpins, Avr proteins, and death
-
Alfano, J. R., and Collmer, A. 1997. The type III (Hrp) secretion pathway of plant pathogenic bacteria: Trafficking harpins, Avr proteins, and death. J. Bacteriol. 179:5655-5662.
-
(1997)
J. Bacteriol
, vol.179
, pp. 5655-5662
-
-
Alfano, J.R.1
Collmer, A.2
-
2
-
-
4744364745
-
Type III secretion system effector proteins: Double agents in bacterial disease and plant defense
-
Alfano, J. R., and Collmer, A. 2004. Type III secretion system effector proteins: Double agents in bacterial disease and plant defense. Annu. Rev. Phytopathol. 42:385-414.
-
(2004)
Annu. Rev. Phytopathol
, vol.42
, pp. 385-414
-
-
Alfano, J.R.1
Collmer, A.2
-
3
-
-
33847247982
-
The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization
-
Amblar, M., Barbas, A., Gomez-Puertas, P., and Arraiano, C. M. 2007. The role of the S1 domain in exoribonucleolytic activity: Substrate specificity and multimerization. RNA 13:317-327.
-
(2007)
RNA
, vol.13
, pp. 317-327
-
-
Amblar, M.1
Barbas, A.2
Gomez-Puertas, P.3
Arraiano, C.M.4
-
4
-
-
40449098228
-
PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins
-
Andrade, J. M., and Arraiano, C. M. 2008. PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins. RNA 14:543-551.
-
(2008)
RNA
, vol.14
, pp. 543-551
-
-
Andrade, J.M.1
Arraiano, C.M.2
-
5
-
-
0036747469
-
Ecc), which encodes an extracytoplasmic function subfamily of sigma factor required for expression of the HRP regulon
-
Ecc), which encodes an extracytoplasmic function subfamily of sigma factor required for expression of the HRP regulon. Mol. Plant-Microbe Interact. 15:971-980.
-
(2002)
Mol. Plant-Microbe Interact
, vol.15
, pp. 971-980
-
-
Chatterjee, A.1
Cui, Y.2
Chatterjee, A.K.3
-
6
-
-
0037172995
-
Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica
-
Clements, M. O., Eriksson, S., Thompson, A., Lucchini, S., Hinton, J. C., Normark, S., and Rhen, M. 2002. Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica. Proc. Natl. Acad. Sci. U.S.A. 99:8784-8789.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 8784-8789
-
-
Clements, M.O.1
Eriksson, S.2
Thompson, A.3
Lucchini, S.4
Hinton, J.C.5
Normark, S.6
Rhen, M.7
-
7
-
-
32644435694
-
Degradation of RNA in bacteria: Comparison of mRNA and stable RNA
-
Deutscher, M. P. 2006. Degradation of RNA in bacteria: Comparison of mRNA and stable RNA. Nucleic Acids Res. 34:659-666.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 659-666
-
-
Deutscher, M.P.1
-
8
-
-
0003395950
-
Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
-
Donovan, W. P., and Kushner, S. R. 1986. Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc. Natl. Acad. Sci. U.S.A. 83:120-124.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A
, vol.83
, pp. 120-124
-
-
Donovan, W.P.1
Kushner, S.R.2
-
9
-
-
25844493154
-
RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction
-
Dubey, A. K., Baker, C. S., Romeo, T., and Babitzke, P. 2005. RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. RNA 11:1579-1587.
-
(2005)
RNA
, vol.11
, pp. 1579-1587
-
-
Dubey, A.K.1
Baker, C.S.2
Romeo, T.3
Babitzke, P.4
-
10
-
-
0033591446
-
Type III secretion machines: Bacterial devices for protein delivery into host cells
-
Galan, J. E., and Collmer, A. 1999. Type III secretion machines: Bacterial devices for protein delivery into host cells. Science 284:1322-1328.
-
(1999)
Science
, vol.284
, pp. 1322-1328
-
-
Galan, J.E.1
Collmer, A.2
-
11
-
-
0028114044
-
The regulation of competence transcription factor synthesis constitutes a critical control point in the regulation of competence in Bacillus subtilis
-
Hahn, J., Kong, L., and Dubnau, D. 1994. The regulation of competence transcription factor synthesis constitutes a critical control point in the regulation of competence in Bacillus subtilis. J. Bacteriol. 176:5753-5761.
-
(1994)
J. Bacteriol
, vol.176
, pp. 5753-5761
-
-
Hahn, J.1
Kong, L.2
Dubnau, D.3
-
12
-
-
0004753911
-
Type III protein secretion systems in plant and animal pathogenic bacteria
-
He, S. Y. 1998. Type III protein secretion systems in plant and animal pathogenic bacteria. Annu. Rev. Phytopathol. 36:363-392.
-
(1998)
Annu. Rev. Phytopathol
, vol.36
, pp. 363-392
-
-
He, S.Y.1
-
13
-
-
0031864184
-
Type III protein secretion systems in bacterial pathogens of animals and plants
-
Hueck, C. J. 1998. Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiol. Mol. Biol. Rev. 62:379-433.
-
(1998)
Microbiol. Mol. Biol. Rev
, vol.62
, pp. 379-433
-
-
Hueck, C.J.1
-
14
-
-
0016754161
-
Polynucleotide phosphorylase can participate in decay of mRNA in Escherichia coli in the absence of ribonuclease II
-
Kinscherf, T. G., and Apirion, D. 1975. Polynucleotide phosphorylase can participate in decay of mRNA in Escherichia coli in the absence of ribonuclease II. Mol. Gen. Genet. 139:357-362.
-
(1975)
Mol. Gen. Genet
, vol.139
, pp. 357-362
-
-
Kinscherf, T.G.1
Apirion, D.2
-
15
-
-
14544291492
-
A three-component regulatory system regulates biofilm maturation and type III secretion in Pseudomonas aeruginosa
-
Kuchma, S. L., Connolly, J. P., and O'Toole, G. A. 2005. A three-component regulatory system regulates biofilm maturation and type III secretion in Pseudomonas aeruginosa. J. Bacteriol. 187:1441-1454.
-
(2005)
J. Bacteriol
, vol.187
, pp. 1441-1454
-
-
Kuchma, S.L.1
Connolly, J.P.2
O'Toole, G.A.3
-
16
-
-
0030468099
-
Polyadenylation accelerates degradation of chloroplast mRNA
-
Kudla, J., Hayes, R., and Gruissem, W. 1996. Polyadenylation accelerates degradation of chloroplast mRNA. EMBO (Eur. Mol. Biol. Organ.) J. 15:7137-7146.
-
(1996)
EMBO (Eur. Mol. Biol. Organ.) J
, vol.15
, pp. 7137-7146
-
-
Kudla, J.1
Hayes, R.2
Gruissem, W.3
-
17
-
-
0036719292
-
MRNA decay in Escherichia coli comes of age
-
Kushner, S. R. 2002. mRNA decay in Escherichia coli comes of age. J. Bacteriol. 184:4658-4665.
-
(2002)
J. Bacteriol
, vol.184
, pp. 4658-4665
-
-
Kushner, S.R.1
-
18
-
-
0025368819
-
A new family of RSF1010- derived expression and lac-fusion broad-host-range vectors for gramnegative bacteria
-
Labes, M., Puhler, A., and Simon, R. 1990. A new family of RSF1010- derived expression and lac-fusion broad-host-range vectors for gramnegative bacteria. Gene 89:37-46.
-
(1990)
Gene
, vol.89
, pp. 37-46
-
-
Labes, M.1
Puhler, A.2
Simon, R.3
-
19
-
-
0037168641
-
Identification and cloning of human polynucleotide phosphorylase, hPNPase old-35, in the context of terminal differentiation and cellular senescence
-
Leszczyniecka, M., Kang, D. C., Sarkar, D., Su, Z. Z., Holmes, M., Valerie, K., and Fisher, P. B. 2002. Identification and cloning of human polynucleotide phosphorylase, hPNPase old-35, in the context of terminal differentiation and cellular senescence. Proc. Natl. Acad. Sci. U.S.A. 99:16636-16641.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 16636-16641
-
-
Leszczyniecka, M.1
Kang, D.C.2
Sarkar, D.3
Su, Z.Z.4
Holmes, M.5
Valerie, K.6
Fisher, P.B.7
-
20
-
-
0035170963
-
Predictive and interpretive simulation of green fluorescent protein expression in reporter bacteria
-
Leveau, J. H., and Lindow, S. E. 2001. Predictive and interpretive simulation of green fluorescent protein expression in reporter bacteria. J. Bacteriol. 183:6752-6762.
-
(2001)
J. Bacteriol
, vol.183
, pp. 6752-6762
-
-
Leveau, J.H.1
Lindow, S.E.2
-
21
-
-
0028100687
-
The role of individual exoribonucleases in processing at the 3' end of Escherichia coli tRNA precursors
-
Li, Z., and Deutscher, M. P. 1994. The role of individual exoribonucleases in processing at the 3' end of Escherichia coli tRNA precursors. J. Biol. Chem. 269:6064-6071.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 6064-6071
-
-
Li, Z.1
Deutscher, M.P.2
-
22
-
-
0030841920
-
The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in escherichia coli
-
Liu, M. Y., Gui, G., Wei, B., Preston, J. F., 3rd, Oakford, L., Yuksel, U., Giedroc, D. P., and Romeo, T. 1997. The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli. J. Biol. Chem. 272:17502-17510.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 17502-17510
-
-
Liu, M.Y.1
Gui, G.2
Wei, B.3
Preston III, J.F.4
Oakford, L.5
Yuksel, U.6
Giedroc, D.P.7
Romeo, T.8
-
23
-
-
7344251897
-
Characterization of a novel RNA regulator of erwinia carotovora ssp. carotovora that controls production of extracellular enzymes and secondary metabolites
-
Liu, Y., Cui, Y., Mukherjee, A., and Chatterjee, A. K. 1998. Characterization of a novel RNA regulator of Erwinia carotovora ssp. carotovora that controls production of extracellular enzymes and secondary metabolites. Mol. Microbiol. 29:219-234.
-
(1998)
Mol. Microbiol
, vol.29
, pp. 219-234
-
-
Liu, Y.1
Cui, Y.2
Mukherjee, A.3
Chatterjee, A.K.4
-
24
-
-
0032531768
-
Ribonuclease E is a 5'-end-dependent endonuclease
-
Mackie, G. A. 1998. Ribonuclease E is a 5'-end-dependent endonuclease. Nature 395:720-723.
-
(1998)
Nature
, vol.395
, pp. 720-723
-
-
Mackie, G.A.1
-
25
-
-
0344011974
-
A genetic basis for pseudomonas aeruginosa biofilm antibiotic resistance
-
Mah, T. F., Pitts, B., Pellock, B., Walker, G. C., Stewart, P. S., and O'Toole, G. A. 2003. A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resistance. Nature 426:306-310.
-
(2003)
Nature
, vol.426
, pp. 306-310
-
-
Mah, T.F.1
Pitts, B.2
Pellock, B.3
Walker, G.C.4
Stewart, P.S.5
O'Toole, G.A.6
-
26
-
-
0033735452
-
Improved gfp and inaZ broad-host-range promoter-probe vectors
-
Miller, W. G., Leveau, J. H. J., and Lindow, S. E. 2000. Improved gfp and inaZ broad-host-range promoter-probe vectors. Mol. Plant-Microbe Interact. 13:1243-1250.
-
(2000)
Mol. Plant-Microbe Interact
, vol.13
, pp. 1243-1250
-
-
Miller, W.G.1
Leveau, J.H.J.2
Lindow, S.E.3
-
27
-
-
0034710943
-
Polynucleotide phosphorylase functions both as a 3'.5' exonuclease and a poly(A) polymerase in Escherichia coli
-
Mohanty, B. K., and Kushner, S. R. 2000. Polynucleotide phosphorylase functions both as a 3'.5' exonuclease and a poly(A) polymerase in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 97:11966-11971.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A
, vol.97
, pp. 11966-11971
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
28
-
-
16844379766
-
Participation of 3'-to-5' exoribonucleases in the turnover of Bacillus subtilis mRNA
-
Oussenko, I. A., Abe, T., Ujiie, H., Muto, A., and Bechhofer, D. H. 2005. Participation of 3'-to-5' exoribonucleases in the turnover of Bacillus subtilis mRNA. J. Bacteriol. 187:2758-2767.
-
(2005)
J. Bacteriol
, vol.187
, pp. 2758-2767
-
-
Oussenko, I.A.1
Abe, T.2
Ujiie, H.3
Muto, A.4
Bechhofer, D.H.5
-
29
-
-
33645519598
-
Population behavior analysis of dspE and pelD regulation in erwinia chrysanthemi 3937
-
Peng, Q., Yang, S., Charkowski, A. O., Yap, M. N., Steeber, D. A., Keen, N. T., and Yang, C. H. 2006. Population behavior analysis of dspE and pelD regulation in Erwinia chrysanthemi 3937. Mol. Plant-Microbe Interact. 19:451-457.
-
(2006)
Mol. Plant-Microbe Interact
, vol.19
, pp. 451-457
-
-
Peng, Q.1
Yang, S.2
Charkowski, A.O.3
Yap, M.N.4
Steeber, D.A.5
Keen, N.T.6
Yang, C.H.7
-
30
-
-
0036581160
-
Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
-
Published online
-
Pfaffl, M. W., Horgan, G. W., and Dempfle, L. 2002. Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res. 30:e36. Published online.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Pfaffl, M.W.1
Horgan, G.W.2
Dempfle, L.3
-
31
-
-
0141532929
-
Changes in Escherichia coli transcriptome during acclimatization at low temperature
-
Polissi, A., De Laurentis, W., Zangrossi, S., Briani, F., Longhi, V., Pesole, G., and Deho, G. 2003. Changes in Escherichia coli transcriptome during acclimatization at low temperature. Res. Microbiol. 154:573-580.
-
(2003)
Res. Microbiol
, vol.154
, pp. 573-580
-
-
Polissi, A.1
De Laurentis, W.2
Zangrossi, S.3
Briani, F.4
Longhi, V.5
Pesole, G.6
Deho, G.7
-
32
-
-
84934443045
-
Polynucleotide phosphorylase and the T3SS
-
Rosenzweig, J. A., and Schesser, K. 2007. Polynucleotide phosphorylase and the T3SS. Adv. Exp. Med. Biol. 603:217-224.
-
(2007)
Adv. Exp. Med. Biol
, vol.603
, pp. 217-224
-
-
Rosenzweig, J.A.1
Schesser, K.2
-
33
-
-
12844250037
-
Modulation of yersinia type three secretion system by the S1 domain of polynucleotide phosphorylase
-
Rosenzweig, J. A., Weltman, G., Plano, G. V., and Schesser, K. 2005. Modulation of Yersinia type three secretion system by the S1 domain of polynucleotide phosphorylase. J. Biol. Chem. 280:156-163.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 156-163
-
-
Rosenzweig, J.A.1
Weltman, G.2
Plano, G.V.3
Schesser, K.4
-
34
-
-
34247128328
-
Polynucleotide phosphorylase independently controls virulence factor expression levels and export in Yersinia spp
-
Rosenzweig, J. A., Chromy, B., Echeverry, A., Yang, J., Adkins, B., Plano, G. V., McCutchen-Maloney, S., and Schesser, K. 2007. Polynucleotide phosphorylase independently controls virulence factor expression levels and export in Yersinia spp. FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett. 270:255-264.
-
(2007)
FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett
, vol.270
, pp. 255-264
-
-
Rosenzweig, J.A.1
Chromy, B.2
Echeverry, A.3
Yang, J.4
Adkins, B.5
Plano, G.V.6
McCutchen-Maloney, S.7
Schesser, K.8
-
35
-
-
27144485749
-
Function of the conserved S1 and KH domains in polynucleotide phosphorylase
-
Stickney, L. M., Hankins, J. S., Miao, X., and Mackie, G. A. 2005. Function of the conserved S1 and KH domains in polynucleotide phosphorylase. J. Bacteriol. 187:7214-7221.
-
(2005)
J. Bacteriol
, vol.187
, pp. 7214-7221
-
-
Stickney, L.M.1
Hankins, J.S.2
Miao, X.3
Mackie, G.A.4
-
36
-
-
33750208366
-
Regulation of the type III secretion system in phytopathogenic bacteria
-
Tang, X., Xiao, Y., and Zhou, J. M. 2006. Regulation of the type III secretion system in phytopathogenic bacteria. Mol. Plant-Microbe Interact. 19:1159-1166.
-
(2006)
Mol. Plant-Microbe Interact
, vol.19
, pp. 1159-1166
-
-
Tang, X.1
Xiao, Y.2
Zhou, J.M.3
-
37
-
-
38049028411
-
Characterization of the role of ribonucleases in salmonella small RNA decay
-
Viegas, S. C., Pfeiffer, V., Sittka, A., Silva, I. J., Vogel, J., and Arraiano, C. M. 2007. Characterization of the role of ribonucleases in Salmonella small RNA decay. Nucleic Acids Res. 35:7651-7664.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7651-7664
-
-
Viegas, S.C.1
Pfeiffer, V.2
Sittka, A.3
Silva, I.J.4
Vogel, J.5
Arraiano, C.M.6
-
38
-
-
0035046480
-
Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli
-
Yamanaka, K., and Inouye, M. 2001. Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli. J. Bacteriol. 183:2808-2816.
-
(2001)
J. Bacteriol
, vol.183
, pp. 2808-2816
-
-
Yamanaka, K.1
Inouye, M.2
-
39
-
-
0035991173
-
Hrp genes of Erwinia chrysanthemi 3937 are important virulence factors
-
Yang, C. H., Gavilanes-Ruiz, M., Okinaka, Y., Vedel, R., Berthuy, I., Boccara, M., Chen, J. W., Perna, N. T., and Keen, N. T. 2002. hrp genes of Erwinia chrysanthemi 3937 are important virulence factors. Mol. Plant-Microbe Interact. 15:472-480.
-
(2002)
Mol. Plant-Microbe Interact
, vol.15
, pp. 472-480
-
-
Yang, C.H.1
Gavilanes-Ruiz, M.2
Okinaka, Y.3
Vedel, R.4
Berthuy, I.5
Boccara, M.6
Chen, J.W.7
Perna, N.T.8
Keen, N.T.9
-
40
-
-
33847219349
-
Global effect of indole-3-acetic acid biosynthesis on multiple virulence factors of Erwinia chrysanthemi 3937
-
Yang, S., Zhang, Q., Guo, J., Charkowski, A. O., Glick, B. R., Ibekwe, A. M., Cooksey, D. A., and Yang, C. H. 2007. Global effect of indole-3- acetic acid biosynthesis on multiple virulence factors of Erwinia chrysanthemi 3937. Appl. Environ. Microbiol. 73:1079-1088.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 1079-1088
-
-
Yang, S.1
Zhang, Q.2
Guo, J.3
Charkowski, A.O.4
Glick, B.R.5
Ibekwe, A.M.6
Cooksey, D.A.7
Yang, C.H.8
-
41
-
-
51849108601
-
Type III secretion system genes of dickeya dadantii 3937 are induced by plant phenolic acids
-
Published online
-
Yang, S., Peng, Q., San Francisco, M., Wang, Y., Zeng, Q., and Yang, C. H. 2008a. Type III secretion system genes of Dickeya dadantii 3937 are induced by plant phenolic acids. PLoS ONE 3:e2973. Published online.
-
(2008)
PLoS ONE
, vol.3
-
-
Yang, S.1
Peng, Q.2
San Francisco, M.3
Wang, Y.4
Zeng, Q.5
Yang, C.H.6
-
42
-
-
37149028427
-
Dynamic regulation of GacA in type III secretion, pectinase gene expression, pellicle formation, and pathogenicity of dickeya dadantii (erwinia chrysanthemi 3937)
-
Yang, S., Peng, Q., Zhang, Q., Yi, X., Choi, C. J., Reedy, R. M., Charkowski, A. O., and Yang, C. H. 2008b. Dynamic regulation of GacA in type III secretion, pectinase gene expression, pellicle formation, and pathogenicity of Dickeya dadantii (Erwinia chrysanthemi 3937). Mol. Plant-Microbe Interact. 21:133-142.
-
(2008)
Mol. Plant-Microbe Interact
, vol.21
, pp. 133-142
-
-
Yang, S.1
Peng, Q.2
Zhang, Q.3
Yi, X.4
Choi, C.J.5
Reedy, R.M.6
Charkowski, A.O.7
Yang, C.H.8
-
43
-
-
11844278554
-
The erwinia chrysanthemi type III secretion system is required for multicellular behavior
-
Yap, M. N., Yang, C. H., Barak, J. D., Jahn, C. E., and Charkowski, A. O. 2005. The Erwinia chrysanthemi type III secretion system is required for multicellular behavior. J. Bacteriol. 187:639-648.
-
(2005)
J. Bacteriol
, vol.187
, pp. 639-648
-
-
Yap, M.N.1
Yang, C.H.2
Barak, J.D.3
Jahn, C.E.4
Charkowski, A.O.5
-
44
-
-
31844446927
-
Polynucleotide phosphorylase negatively controls spv virulence gene expression in Salmonella enterica
-
Ygberg, S. E., Clements, M. O., Rytkonen, A., Thompson, A., Holden, D. W., Hinton, J. C. D., and Rhen, M. 2006. Polynucleotide phosphorylase negatively controls spv virulence gene expression in Salmonella enterica. Infect. Immun. 74:1243-1254
-
(2006)
Infect. Immun
, vol.74
, pp. 1243-1254
-
-
Ygberg, S.E.1
Clements, M.O.2
Rytkonen, A.3
Thompson, A.4
Holden, D.W.5
Hinton, J.C.D.6
Rhen, M.7
-
45
-
-
0035283033
-
Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
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Zuo, Y., and Deutscher, M. P. 2001. Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution. Nucleic Acids Res. 29:1017-1026
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(2001)
Nucleic Acids Res
, vol.29
, pp. 1017-1026
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Zuo, Y.1
Deutscher, M.P.2
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