-
1
-
-
35648974784
-
Unique diversity of carotenoid-producing bacteria isolated from Misasa, a radioactive site in Japan
-
Asker, D., Beppu, T. & Ueda, K. (2007). Unique diversity of carotenoid-producing bacteria isolated from Misasa, a radioactive site in Japan. Appl Microbiol Biotechnol 77, 383-392.
-
(2007)
Appl Microbiol Biotechnol
, vol.77
, pp. 383-392
-
-
Asker, D.1
Beppu, T.2
Ueda, K.3
-
2
-
-
0037735436
-
-
Baltimore, MD: Williams & Wilkins
-
Bergey, D. H., Harrison, F. C., Breed, R. S., Hammer, B. W. & Huntoon, F. M. (editors) (1923). Bergey's Manual of Determinative Bacteriology. Baltimore, MD: Williams & Wilkins.
-
(1923)
Bergey's Manual of Determinative Bacteriology
-
-
Bergey, D.H.1
Harrison, F.C.2
Breed, R.S.3
Hammer, B.W.4
Huntoon, F.M.5
-
3
-
-
36549051503
-
The genus Flavobacterium
-
Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer
-
Bernardet, J.-F. & Bowman, J. P. (2006). The genus Flavobacterium. In The Prokaryotes, vol. 7, pp. 481-531. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
-
(2006)
The Prokaryotes
, vol.7
, pp. 481-531
-
-
Bernardet, J.-F.1
Bowman, J.P.2
-
4
-
-
0030052649
-
Cutting a Gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)
-
Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 128-148
-
-
Bernardet, J.-F.1
Segers, P.2
Vancanneyt, M.3
Berthe, F.4
Kersters, K.5
Vandamme, P.6
-
5
-
-
0035989637
-
Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family
-
Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1049-1070
-
-
Bernardet, J.-F.1
Nakagawa, Y.2
Holmes, B.3
-
6
-
-
33646550514
-
Phylogeny of the 1-aminocyclopropane-1-carboxylic acid deaminase-encoding gene acdS in phytobeneficial and pathogenic Proteobacteria and relation with strain biogeography
-
Blaha, D., Prigent-Combaret, C., Sajjad Mirza, M. & Moënne-Loccoz, Y. (2006). Phylogeny of the 1-aminocyclopropane-1-carboxylic acid deaminase-encoding gene acdS in phytobeneficial and pathogenic Proteobacteria and relation with strain biogeography. FEMS Microbiol Ecol 56, 455-470.
-
(2006)
FEMS Microbiol Ecol
, vol.56
, pp. 455-470
-
-
Blaha, D.1
Prigent-Combaret, C.2
Sajjad Mirza, M.3
Moënne-Loccoz, Y.4
-
7
-
-
55849100803
-
Novel methylotrophic bacteria isolated from the River Thames (London, UK)
-
Boden, R., Thomas, E., Savani, P., Kelly, D. P. & Wood, A. P. (2008). Novel methylotrophic bacteria isolated from the River Thames (London, UK). Environ Microbiol 10, 3225-3236.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3225-3236
-
-
Boden, R.1
Thomas, E.2
Savani, P.3
Kelly, D.P.4
Wood, A.P.5
-
9
-
-
0030512205
-
Prevention of pink-pigmented methylotrophic bacteria (Methylobacterium mesophilicum) contamination of plant tissue cultures
-
Chanprame, S., Todd, J. J. & Widholm, J.M. (1996). Prevention of pink-pigmented methylotrophic bacteria (Methylobacterium mesophilicum) contamination of plant tissue cultures. Plant Cell Rep 16, 222-225.
-
(1996)
Plant Cell Rep
, vol.16
, pp. 222-225
-
-
Chanprame, S.1
Todd, J.J.2
Widholm, J.M.3
-
10
-
-
35648991375
-
EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
-
Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2259-2261
-
-
Chun, J.1
Lee, J.H.2
Jung, Y.3
Kim, M.4
Kim, S.5
Kim, B.K.6
Lim, Y.W.7
-
11
-
-
0141614747
-
Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol
-
Dunfield, P. F., Khmelenina, V. N., Suzina, N. E., Trotsenko, Y. A. & Dedysh, S. N. (2003). Methylocella silvestris sp. nov., a novel methanotroph isolated from an acidic forest cambisol. Int J Syst Evol Microbiol 53, 1231-1239.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1231-1239
-
-
Dunfield, P.F.1
Khmelenina, V.N.2
Suzina, N.E.3
Trotsenko, Y.A.4
Dedysh, S.N.5
-
12
-
-
0018828401
-
A simple test for flexirubin-type pigments
-
Fautz, E. & Reichenbach, H. (1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87-91.
-
(1980)
FEMS Microbiol Lett
, vol.8
, pp. 87-91
-
-
Fautz, E.1
Reichenbach, H.2
-
13
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
14
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
15
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
16
-
-
0004217182
-
-
Washington, DC: American Society for Microbiology
-
Gerhardt, P. R., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
-
(1994)
Methods for General and Molecular Bacteriology
-
-
Gerhardt, P.R.1
Murray, R.G.E.2
Wood, W.A.3
Krieg, N.R.4
-
17
-
-
0020046820
-
A taxonomic study of some Gram-negative facultatively methylotrophic bacteria
-
Green, P. N. & Bousfield, I. J. (1982). A taxonomic study of some Gram-negative facultatively methylotrophic bacteria. J Gen Microbiol 128, 623-638.
-
(1982)
J Gen Microbiol
, vol.128
, pp. 623-638
-
-
Green, P.N.1
Bousfield, I.J.2
-
18
-
-
33746256547
-
Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea
-
Kim, B. Y., Weon, H. Y., Cousin, S., Yoo, S. H., Kwon, S. W., Go, S. J. & Stackebrandt, E. (2006). Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. Int J Syst Evol Microbiol 56, 1645-1649.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1645-1649
-
-
Kim, B.Y.1
Weon, H.Y.2
Cousin, S.3
Yoo, S.H.4
Kwon, S.W.5
Go, S.J.6
Stackebrandt, E.7
-
19
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
Kirchman, D. L. (2002). The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39, 91-100.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
20
-
-
0001440003
-
Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases
-
Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5, 2359-2367.
-
(1982)
J Liq Chromatogr
, vol.5
, pp. 2359-2367
-
-
Kroppenstedt, R.M.1
-
21
-
-
50949113703
-
The aerobic methylotrophic prokaryotes
-
Edited by M. Dworkin, K.-H. Schleifer & E. Stackebrandt. New York: Springer
-
Lidstrom, M. E. (2006). The aerobic methylotrophic prokaryotes. In The Prokaryotes, vol. 2, pp. 618-634. Edited by M. Dworkin, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
-
(2006)
The Prokaryotes
, vol.2
, pp. 618-634
-
-
Lidstrom, M.E.1
-
22
-
-
77956672543
-
-
2nd edn
-
Ludwig, W., Euzéby, J. & Whitman, W. B. (2008). Draft Taxonomic Outline of the Bacteroidetes, Planctomycetes, Chlamydiae, Spirochaetes, Fibrobacteres, Fusobacteria, Acidobacteria, Verrucomicrobia, Dictyoglomi, and Gemmatimonadetes (Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4). http://www.bergeys.org/outlines/ Bergeys-Vol-4-Outline.pdf
-
(2008)
Draft Taxonomic Outline of the Bacteroidetes, Planctomycetes, Chlamydiae, Spirochaetes, Fibrobacteres, Fusobacteria, Acidobacteria, Verrucomicrobia, Dictyoglomi, and Gemmatimonadetes Bergey's Manual of Systematic Bacteriology
, vol.4
-
-
Ludwig, W.1
Euzéby, J.2
Whitman, W.B.3
-
23
-
-
33847223126
-
Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice
-
Madhaiyan, M., Kim, B.-Y., Poonguzhali, S., Kwon, S.-W., Song, M.-H., Ryu, J.-H., Go, S.-J., Koo, B.-S. & Sa, T.-M. (2007a). Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice. Int J Syst Evol Microbiol 57, 326-331.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 326-331
-
-
Madhaiyan, M.1
Kim, B.-Y.2
Poonguzhali, S.3
Kwon, S.-W.4
Song, M.-H.5
Ryu, J.-H.6
Go, S.-J.7
Koo, B.-S.8
Sa, T.-M.9
-
24
-
-
34547758441
-
Metal tolerating methylotrophic bacteria reduces nickel and cadmium toxicity and promotes plant growth of tomato (Lycopersicon esculentum L.)
-
Madhaiyan, M., Poonguzhali, S. & Sa, T. M. (2007b). Metal tolerating methylotrophic bacteria reduces nickel and cadmium toxicity and promotes plant growth of tomato (Lycopersicon esculentum L.). Chemosphere 69, 220-228.
-
(2007)
Chemosphere
, vol.69
, pp. 220-228
-
-
Madhaiyan, M.1
Poonguzhali, S.2
Sa, T.M.3
-
25
-
-
60549086187
-
Methylobacterium phyllosphaerae sp. nov., a pink-pigmented facultatively methylotrophic bacterium from rice
-
Madhaiyan, M., Poonguzhali, S., Kwon, S. W. & Sa, T. M. (2009). Methylobacterium phyllosphaerae sp. nov., a pink-pigmented facultatively methylotrophic bacterium from rice. Int J Syst Evol Microbiol 59, 22-27.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 22-27
-
-
Madhaiyan, M.1
Poonguzhali, S.2
Kwon, S.W.3
Sa, T.M.4
-
26
-
-
0030872092
-
The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs
-
McDonald, I. R. & Murrell, J. C. (1997). The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs. Appl Environ Microbiol 63, 3218-3224.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3218-3224
-
-
McDonald, I.R.1
Murrell, J.C.2
-
27
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
28
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
-
(1988)
Proc Natl Acad Sci U S A
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
29
-
-
33748797426
-
Cultivation-dependent characterization of rhizobacterial communities from field grown Chinese cabbage Brassica campestris ssp pekinensis and screening of potential plant growth promoting bacteria
-
Poonguzhali, S., Madhaiyan, M. & Sa, T. M. (2006). Cultivation-dependent characterization of rhizobacterial communities from field grown Chinese cabbage Brassica campestris ssp pekinensis and screening of potential plant growth promoting bacteria. Plant Soil 286, 167-180.
-
(2006)
Plant Soil
, vol.286
, pp. 167-180
-
-
Poonguzhali, S.1
Madhaiyan, M.2
Sa, T.M.3
-
30
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
31
-
-
0001876608
-
Identification of bacteria through fatty acid analysis
-
Edited by Z. Klement, K. Rudolph & D. C. Sands. Budapest: Akademiai Kiado
-
Sasser, M. (1990). Identification of bacteria through fatty acid analysis. In Methods in Phytobacteriology, pp. 199-204. Edited by Z. Klement, K. Rudolph & D. C. Sands. Budapest: Akademiai Kiado.
-
(1990)
Methods in Phytobacteriology
, pp. 199-204
-
-
Sasser, M.1
-
32
-
-
0021928234
-
Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains
-
Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
-
(1985)
Int J Syst Bacteriol
, vol.35
, pp. 151-154
-
-
Seldin, L.1
Dubnau, D.2
-
33
-
-
0035989633
-
Report of the ad hoc committee for the reevaluation of the species definition in bacteriology
-
Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kämpfer, P., Maiden, M. C. J., Nesme, X., Rosselló-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.D.4
Kämpfer, P.5
Maiden, M.C.J.6
Nesme, X.7
Rosselló-Mora, R.8
Swings, J.9
-
34
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
35
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
36
-
-
0028890921
-
Phylogeny of Sym plasmids of rhizobia by PCR-based sequencing of a nodC segment
-
Ueda, T., Suga, Y., Yahiro, N. & Matsuguchi, T. (1995). Phylogeny of Sym plasmids of rhizobia by PCR-based sequencing of a nodC segment. J Bacteriol 177, 468-472.
-
(1995)
J Bacteriol
, vol.177
, pp. 468-472
-
-
Ueda, T.1
Suga, Y.2
Yahiro, N.3
Matsuguchi, T.4
-
37
-
-
0014793109
-
Enrichment, isolation and some properties of methane-utilizing bacteria
-
Whittenbury, R., Davies, S. L. & Wilkinson, J. F. (1970). Enrichment, isolation and some properties of methane-utilizing bacteria. J Gen Microbiol 61, 205-218.
-
(1970)
J Gen Microbiol
, vol.61
, pp. 205-218
-
-
Whittenbury, R.1
Davies, S.L.2
Wilkinson, J.F.3
-
38
-
-
33744745279
-
Flavobacterium soli sp. nov., isolated from soil
-
Yoon, J.-H., Kang, S.-J. & Oh, T.-K. (2006). Flavobacterium soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 997-1000.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 997-1000
-
-
Yoon, J.-H.1
Kang, S.-J.2
Oh, T.-K.3
|