GPFrontend and GPGraphics: Graphical analysis tools for genetic association studies

BMC Bioinformatics

Volumn 11, Issue , 2010, Pages

  Uebe, Steffen ^a   Pasutto, Francesca ^a   Krumbiegel, Mandy ^a   Schanze, Denny ^a,b   Ekici, Arif B ^a   Reis, André ^a  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b OTTO VON GUERICKE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADDITIONAL DATUM; COMMAND LINE; GRAPHICAL ANALYSIS; MICROSOFT .NET; MICROSOFT WINDOWS ENVIRONMENT; SINGLE SAMPLE; SOFTWARE SUITE; VISUAL STUDIOS;

BIOINFORMATICS; GENES; GRAPHICAL USER INTERFACES; TOOLS;

SOFTWARE PACKAGES;

ARTICLE; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER PROGRAM; GENETIC ASSOCIATION; GENOME; METHODOLOGY; MICROARRAY ANALYSIS;

COMPUTER GRAPHICS; GENOME; GENOME-WIDE ASSOCIATION STUDY; MICROARRAY ANALYSIS; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 77956695750     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-472     Document Type: Article

References (10)

1. Uhl GR, Liu QR, Walther D, Hess J, Naiman D. Polysubstance abuse-vulnerability genes: genome scans for association, using 1,004 subjects and 1,494 single-nucleotide polymorphisms. Am J Hum Genet 2001, 69:1290-1300. 10.1086/324467, 1235541, 11704927.
2. Johnson C, Drgon T, Liu QR, Walther D, Edenberg H, Rice J, Foroud T, Uhl GR. Pooled association genome scanning for alcohol dependence using 104,268 SNPs: validation and use to identify alcoholism vulnerability loci in unrelated individuals from the collaborative study on the genetics of alcoholism. Am J Med Genet B Neuropsychiatr Genet 2006, 141B:844-853. 10.1002/ajmg.b.30346, 16894614.
3. Butcher LM, Meaburn E, Knight J, Sham PC, Schalkwyk LC, Craig IW, Plomin R. SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children. Hum Mol Genet 2005, 14:1315-1325. 10.1093/hmg/ddi142, 15800012.
4. Hinds DA, Seymour AB, Durham LK, Banerjee P, Ballinger DG, Milos PM, Cox DR, Thompson JF, Frazer KA. Application of pooled genotyping to scan candidate regions for association with HDL cholesterol levels. Hum Genomics 2004, 1:421-434.
5. Macgregor S, Zhao ZZ, Henders A, Nicholas MG, Montgomery GW, Visscher PM. Highly cost-efficient genome-wide association studies using DNA pools and dense SNP arrays. Nucleic Acids Res 2008, 36:e35. 10.1093/nar/gkm1060, 2346606, 18276640.
6. Pearson JV, Huentelman MJ, Halperin RF, Tembe WD, Melquist S, Homer N, Brun M, Szelinger S, Coon KD, Zismann VL, et al. Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide-polymorphism association studies. Am J Hum Genet 2007, 80:126-139. 10.1086/510686, 1785308, 17160900.
7. Yang HC, Huang MC, Li LH, Lin CH, Yu AL, Diccianni MB, Wu JY, Chen YT, Fann CS. MPDA: microarray pooled DNA analyzer. BMC Bioinformatics 2008, 9:196. 10.1186/1471-2105-9-196, 2387178, 18412951.
8. Shifman S, Johannesson M, Bronstein M, Chen SX, Collier DA, Craddock NJ, Kendler KS, Li T, O'Donovan M, O'Neill FA, et al. Genome-wide association identifies a common variant in the reelin gene that increases the risk of schizophrenia only in women. PLoS Genet 2008, 4:e28. 10.1371/journal.pgen.0040028, 2242812,2242812, 18282107.
9. Melquist S, Craig DW, Huentelman MJ, Crook R, Pearson JV, Baker M, Zismann VL, Gass J, Adamson J, Szelinger S, et al. Identification of a novel risk locus for progressive supranuclear palsy by a pooled genomewide scan of 500,288 single-nucleotide polymorphisms. Am J Hum Genet 2007, 80:769-778. 10.1086/513320, 1852701, 17357082.
10. Devlin B, Roeder K. Genomic control for association studies. Biometrics 1999, 55:997-1004. 10.1111/j.0006-341X.1999.00997.x, 11315092.