메뉴 건너뛰기




Volumn 1, Issue 3, 2009, Pages 179-186

Text mining biomedical literature for constructing gene regulatory networks

Author keywords

gene regulatory network; text mining

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATION; BIOLOGICAL MODEL; BIOLOGY; COMPUTER PROGRAM; DATA MINING; GENE REGULATORY NETWORK; GENOMICS; GENOTYPE; INTERNET; METABOLISM; METHODOLOGY; NATURAL LANGUAGE PROCESSING; PHENOTYPE; PSEUDOMONAS AERUGINOSA; THEORETICAL MODEL;

EID: 77956643817     PISSN: 19132751     EISSN: 18671462     Source Type: Journal    
DOI: 10.1007/s12539-009-0028-7     Document Type: Article
Times cited : (12)

References (27)
  • 5
    • 84867919822 scopus 로고
    • Transformation-based error-driven learning and natural language pro-pessing: A case study in part-of-speech tagging
    • Brill, E. 1995. Transformation-based error-driven learning and natural language pro-pessing: A case study in part-of-speech tagging. Computational Linguistics 21, 543-566.
    • (1995) Computational Linguistics , vol.21 , pp. 543-566
    • Brill, E.1
  • 7
    • 17244380380 scopus 로고    scopus 로고
    • A survey of current work in biomedical text mining
    • Cohen, A. M., Hersh, W. R. 2005. A survey of current work in biomedical text mining. Briefings in Bioinformatics 6, 57-71.
    • (2005) Briefings in Bioinformatics , vol.6 , pp. 57-71
    • Cohen, A.M.1    Hersh, W.R.2
  • 9
    • 0035236048 scopus 로고    scopus 로고
    • GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
    • Friedman, C., Kra, P., Yu, H., Krauthammer, M., Rzhetsky, A. 2001. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 17 (Suppl 1), S74-82.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Friedman, C.1    Kra, P.2    Yu, H.3    Krauthammer, M.4    Rzhetsky, A.5
  • 10
    • 1242351547 scopus 로고    scopus 로고
    • Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling
    • Goodman, L., Lory, S. 2004. Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling. Current Opinions on Microbiology 7, 39-44.
    • (2004) Current Opinions on Microbiology , vol.7 , pp. 39-44
    • Goodman, L.1    Lory, S.2
  • 11
    • 3943106585 scopus 로고    scopus 로고
    • Accomplishments and challenges in literature data mining for biology
    • Hirschman, L., Park, J. C., Tsujii, J., Wong, L., Wu, C. H. 2003. Accomplishments and challenges in literature data mining for biology. Bioinformatics 18, 1553-1561.
    • (2003) Bioinformatics , vol.18 , pp. 1553-1561
    • Hirschman, L.1    Park, J.C.2    Tsujii, J.3    Wong, L.4    Wu, C.H.5
  • 12
    • 20744446607 scopus 로고    scopus 로고
    • Literature mining and database annotation of protein phosphorylation using a rule-based system
    • Hu, Z. Z., Narayanaswamy, M., Ravikumar, K. E., Vijay-Shanker, K., Wu, C. H. 2005. Literature mining and database annotation of protein phosphorylation using a rule-based system. Bioinformatics 21, 2759-2765.
    • (2005) Bioinformatics , vol.21 , pp. 2759-2765
    • Hu, Z.Z.1    Narayanaswamy, M.2    Ravikumar, K.E.3    Vijay-Shanker, K.4    Wu, C.H.5
  • 15
    • 0035002541 scopus 로고    scopus 로고
    • Mining literature for protein-protein interactions
    • Marcotte, E. M., Xenarios, I., Eisenberg, D. 2001. Mining literature for protein-protein interactions. Bioinformatics 17, 359-363.
    • (2001) Bioinformatics , vol.17 , pp. 359-363
    • Marcotte, E.M.1    Xenarios, I.2    Eisenberg, D.3
  • 16
    • 12344328483 scopus 로고    scopus 로고
    • Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser
    • McDonald, D. M., Chen, H., Su, H., Marshall, B. B. 2004. Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser. Bioinformatics 20, 3370-3378.
    • (2004) Bioinformatics , vol.20 , pp. 3370-3378
    • McDonald, D.M.1    Chen, H.2    Su, H.3    Marshall, B.B.4
  • 17
    • 0038620464 scopus 로고    scopus 로고
    • Terminology-driven mining of biomedical literature
    • Nenadic, G., Spasic, I., Ananiadou, S. 2003. Terminology-driven mining of biomedical literature. Bioinformatics 19, 938-943.
    • (2003) Bioinformatics , vol.19 , pp. 938-943
    • Nenadic, G.1    Spasic, I.2    Ananiadou, S.3
  • 18
    • 33645104154 scopus 로고    scopus 로고
    • Extraction of regulatory gene / protein networks from Medline
    • Saric, J., Jensen, L. J., Ouzounova, R., Rojas, I., Bork, P. 2005. Extraction of regulatory gene / protein networks from Medline. Bioinformatics 22, 654-650.
    • (2005) Bioinformatics , vol.22 , pp. 650-654
    • Saric, J.1    Jensen, L.J.2    Ouzounova, R.3    Rojas, I.4    Bork, P.5
  • 19
    • 0031020825 scopus 로고    scopus 로고
    • Biosynthesis of pyochelin and dihydroaeruginoic acid requires the iron-regulated pchDCBA operon in Pseudomonas aeruginosa
    • Serino, L., Reimmann, C., Visca, P., Beyeler, M., Chiesa, V. D., Haas, D. 1997. Biosynthesis of pyochelin and dihydroaeruginoic acid requires the iron-regulated pchDCBA operon in Pseudomonas aeruginosa. Journal of Bacteriology 179, 248-257.
    • (1997) Journal of Bacteriology , vol.179 , pp. 248-257
    • Serino, L.1    Reimmann, C.2    Visca, P.3    Beyeler, M.4    Chiesa, V.D.5    Haas, D.6
  • 20
    • 0742321913 scopus 로고    scopus 로고
    • Mining the biomedical literature in the genomic era: an overview
    • Shatkay, H., Feldman, R. 2003. Mining the biomedical literature in the genomic era: an overview. Journal of Computational Biolology 10, 821-855.
    • (2003) Journal of Computational Biolology , vol.10 , pp. 821-855
    • Shatkay, H.1    Feldman, R.2
  • 21
    • 0030924138 scopus 로고    scopus 로고
    • A Transcriptional Activator, FleQ, Regulates Mucin Adhesion and Flagellar Gene Expression in Pseudomonas aeruginosa in a Cascade Manner
    • Shiwani, A. K., Ritchings, B. W., Almina, E. C., Lory, S., Ramphal, R. 1997. A Transcriptional Activator, FleQ, Regulates Mucin Adhesion and Flagellar Gene Expression in Pseudomonas aeruginosa in a Cascade Manner. Journal of Bacteriology 179, 5574-5581.
    • (1997) Journal of Bacteriology , vol.179 , pp. 5574-5581
    • Shiwani, A.K.1    Ritchings, B.W.2    Almina, E.C.3    Lory, S.4    Ramphal, R.5
  • 23
    • 4644231131 scopus 로고    scopus 로고
    • Comparative genomic analysis of Pseudomonas aeruginosa virulence
    • Woods, D. E. 2004. Comparative genomic analysis of Pseudomonas aeruginosa virulence. Trends Microbiology 12, 437-439.
    • (2004) Trends Microbiology , vol.12 , pp. 437-439
    • Woods, D.E.1
  • 26


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.