메뉴 건너뛰기




Volumn 1, Issue 2, 2009, Pages 91-98

Exploring the molecular origin of the high selectivity of multisubunit RNA polymerases by stochastic kinetic models

Author keywords

gene transcription; Gillespie algorithm; multisubunit RNA polymerase; nucleotide addition; stochastic kinetics

Indexed keywords

DNA DIRECTED RNA POLYMERASE; NUCLEOTIDE;

EID: 77956632540     PISSN: 19132751     EISSN: 18671462     Source Type: Journal    
DOI: 10.1007/s12539-009-0031-3     Document Type: Article
Times cited : (4)

References (20)
  • 2
    • 10644237908 scopus 로고    scopus 로고
    • Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center
    • Batada, N. N., Westover, K. D., Bushnell, D. A., Levitt, M., Kornberg, R. D. 2004. Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center. Proc Natl Acad Sci USA 101, 17361-17364.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17361-17364
    • Batada, N.N.1    Westover, K.D.2    Bushnell, D.A.3    Levitt, M.4    Kornberg, R.D.5
  • 3
    • 49449102926 scopus 로고    scopus 로고
    • Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation
    • Brueckner, F., Cramer, P. 2008. Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation. Nature Structural and Molecular Biology 15, 811-818.
    • (2008) Nature Structural and Molecular Biology , vol.15 , pp. 811-818
    • Brueckner, F.1    Cramer, P.2
  • 4
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D. T. 1977. Exact stochastic simulation of coupled chemical reactions. J Phys Chem. 81, 2340-2361.
    • (1977) J Phys Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 5
    • 0035827332 scopus 로고    scopus 로고
    • Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution
    • Gnatt, A. L., Cramer, P., Fu, J. H., Bushnell, D. A., Kornberg, R. D. 2001. Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3. 3 Å Resolution. Science 292, 1876-1882.
    • (2001) Science , vol.292 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.H.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 6
    • 44449103640 scopus 로고    scopus 로고
    • The RNA Polymerase II Trigger Loop Functions in Substrate Selection and Is Directly Targeted by α-Amanitin
    • Kaplan, C. D., Larsson, K. M., Kornberg, R. D. 2008. The RNA Polymerase II Trigger Loop Functions in Substrate Selection and Is Directly Targeted by α-Amanitin. Mol Cell 30, 547-556.
    • (2008) Mol Cell , vol.30 , pp. 547-556
    • Kaplan, C.D.1    Larsson, K.M.2    Kornberg, R.D.3
  • 7
    • 10944232674 scopus 로고    scopus 로고
    • Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS
    • Kettenberger, H., Armache, K. J., Cramer, P. 2004. Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS. Mol Cell 16, 955-965.
    • (2004) Mol Cell , vol.16 , pp. 955-965
    • Kettenberger, H.1    Armache, K.J.2    Cramer, P.3
  • 9
    • 0029861028 scopus 로고    scopus 로고
    • Strategy for identifying the gene encoding the DNA polymerase of molluscum contagiosum virus type 1
    • Sonntag, K.-C., Darai, G. 1996. Strategy for identifying the gene encoding the DNA polymerase of molluscum contagiosum virus type 1. Virus Genes 13, 271-284.
    • (1996) Virus Genes , vol.13 , pp. 271-284
    • Sonntag, K.-C.1    Darai, G.2
  • 11
    • 4644265121 scopus 로고    scopus 로고
    • Discrimination against Deoxyribonucleotide Substrates by Bacterial RNA Polymerase
    • Svetlov, V., Vassylyev, D. G., Artsimovitch, I. 2004. Discrimination against Deoxyribonucleotide Substrates by Bacterial RNA Polymerase. Journal of Biological Chemistry 279, 38087-38090.
    • (2004) Journal of Biological Chemistry , vol.279 , pp. 38087-38090
    • Svetlov, V.1    Vassylyev, D.G.2    Artsimovitch, I.3
  • 15
    • 33751235874 scopus 로고    scopus 로고
    • Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis
    • Wang, D., Bushnell, D. A., Westover, K. D., Kaplan, C. D., Kornberg, R. D. 2006. Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis. Cell 127, 941-954.
    • (2006) Cell , vol.127 , pp. 941-954
    • Wang, D.1    Bushnell, D.A.2    Westover, K.D.3    Kaplan, C.D.4    Kornberg, R.D.5
  • 17
    • 8344234112 scopus 로고    scopus 로고
    • Structural Basis of Transcription
    • Westover, K. D., Bushnell, D. A., Kornberg, R. D. 2004 Structural Basis of Transcription. Cell 119, 481-489.
    • (2004) Cell , vol.119 , pp. 481-489
    • Westover, K.D.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 19
    • 49449112047 scopus 로고    scopus 로고
    • Mechanisms of Nucleotidyl Transfer Catalyzed by the Yeast RNA Polymerase II
    • Zhu, R., Salahub, D. R. 2007. Mechanisms of Nucleotidyl Transfer Catalyzed by the Yeast RNA Polymerase II. AIP Conference Proceedings 963, 104-110.
    • (2007) AIP Conference Proceedings , vol.963 , pp. 104-110
    • Zhu, R.1    Salahub, D.R.2
  • 20
    • 34248147640 scopus 로고    scopus 로고
    • Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models
    • Zhu, R., Ribeiro, A. S., Salahub, D. R., Kauffman, S. A. 2007. Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models. J Theor Biol 246, 725-745.
    • (2007) J Theor Biol , vol.246 , pp. 725-745
    • Zhu, R.1    Ribeiro, A.S.2    Salahub, D.R.3    Kauffman, S.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.